RNA–Protein interactions for RNA: ENST00000411464.3

MRPL55-220, Transcript of mitochondrial ribosomal protein L55, humanhuman

TSL 3

Gene MRPL55, Length 767 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MRPL55-220ENST00000411464 ZNF222Q9UK12 451 aa13.56□□□□□ -0.24
MRPL55-220ENST00000411464 ZNF732B4DXR9 585 aa13.55□□□□□ -0.24
MRPL55-220ENST00000411464 PEX14O75381 377 aa13.55□□□□□ -0.24
MRPL55-220ENST00000411464 CD28P10747 220 aa13.55□□□□□ -0.24
MRPL55-220ENST00000411464 MAP2K3P46734 347 aa13.55□□□□□ -0.24
MRPL55-220ENST00000411464 RPL31P62899 125 aaKnown RBP13.55□□□□□ -0.24
MRPL55-220ENST00000411464 PPP1R8Q12972 351 aaKnown RBP13.55□□□□□ -0.24
MRPL55-220ENST00000411464 CEACAM21Q3KPI0 293 aa13.55□□□□□ -0.24
MRPL55-220ENST00000411464 THAP5Q7Z6K1 395 aa13.55□□□□□ -0.24
MRPL55-220ENST00000411464 NDUFA11Q86Y39 141 aa13.55□□□□□ -0.24
MRPL55-220ENST00000411464 ZNF454Q8N9F8 522 aa13.55□□□□□ -0.24
MRPL55-220ENST00000411464 OR5K1Q8NHB7 308 aa13.55□□□□□ -0.24
MRPL55-220ENST00000411464 OTOSQ8NHW6 89 aa13.55□□□□□ -0.24
MRPL55-220ENST00000411464 MMP28Q9H239 520 aa13.55□□□□□ -0.24
MRPL55-220ENST00000411464 RASL12Q9NYN1 266 aa13.55□□□□□ -0.24
MRPL55-220ENST00000411464 LRP12Q9Y561 859 aa13.55□□□□□ -0.24
MRPL55-220ENST00000411464 RFPL4AA6NLU0 287 aa13.54□□□□□ -0.24
MRPL55-220ENST00000411464 RFPL4AL1F8VTS6 287 aa13.54□□□□□ -0.24
MRPL55-220ENST00000411464 SLC1A7O00341 560 aa13.54□□□□□ -0.24
MRPL55-220ENST00000411464 COX7A1P24310 79 aa13.54□□□□□ -0.24
MRPL55-220ENST00000411464 HABP2Q14520 560 aaPredicted RBP13.54□□□□□ -0.24
MRPL55-220ENST00000411464 MICAQ29983 383 aa13.54□□□□□ -0.24
MRPL55-220ENST00000411464 CEP78Q5JTW2 689 aa13.54□□□□□ -0.24
MRPL55-220ENST00000411464 TMEM200BQ69YZ2 307 aa13.54□□□□□ -0.24
MRPL55-220ENST00000411464 HAGHLQ6PII5 290 aaPredicted RBP13.54□□□□□ -0.24
MRPL55-220ENST00000411464 OR8B12Q8NGG6 310 aa13.54□□□□□ -0.24
MRPL55-220ENST00000411464 TEX47Q8TBZ9 253 aa13.54□□□□□ -0.24
MRPL55-220ENST00000411464 CDCA4Q9BXL8 241 aa13.54□□□□□ -0.24
MRPL55-220ENST00000411464 DGCR6LQ9BY27 220 aa13.54□□□□□ -0.24
MRPL55-220ENST00000411464 C1orf21Q9H246 121 aa13.54□□□□□ -0.24
MRPL55-220ENST00000411464 NIPAL2Q9H841 368 aa13.54□□□□□ -0.24
MRPL55-220ENST00000411464 ZNF702PQ9H963 129 aa13.54□□□□□ -0.24
MRPL55-220ENST00000411464 SERTAD4Q9NUC0 356 aa13.54□□□□□ -0.24
MRPL55-220ENST00000411464 AURKAIP1Q9NWT8 199 aaPredicted RBP13.54□□□□□ -0.24
MRPL55-220ENST00000411464 USE1Q9NZ43 259 aa13.54□□□□□ -0.24
MRPL55-220ENST00000411464 SAMHD1Q9Y3Z3 626 aaKnown RBP13.54□□□□□ -0.24
MRPL55-220ENST00000411464 U3KQV3 271 aa13.54□□□□□ -0.24
MRPL55-220ENST00000411464 VGLL3A8MV65 326 aa13.53□□□□□ -0.24
MRPL55-220ENST00000411464 MTRF1O75570 445 aaKnown RBP13.53□□□□□ -0.24
MRPL55-220ENST00000411464 PSMA6P60900 246 aaKnown RBP13.53□□□□□ -0.24
MRPL55-220ENST00000411464 SPATS1Q496A3 300 aa13.53□□□□□ -0.24
MRPL55-220ENST00000411464 ZBTB37Q5TC79 503 aa13.53□□□□□ -0.24
MRPL55-220ENST00000411464 CYP2R1Q6VVX0 501 aa13.53□□□□□ -0.24
MRPL55-220ENST00000411464 OR4M1Q8NGD0 313 aa13.53□□□□□ -0.24
MRPL55-220ENST00000411464 OR5A2Q8NGI9 324 aa13.53□□□□□ -0.24
MRPL55-220ENST00000411464 OR2T27Q8NH04 317 aa13.53□□□□□ -0.24
MRPL55-220ENST00000411464 AQP3Q92482 292 aa13.53□□□□□ -0.24
MRPL55-220ENST00000411464 PHF21AQ96BD5 680 aa13.53□□□□□ -0.24
MRPL55-220ENST00000411464 REEP1Q9H902 201 aa13.53□□□□□ -0.24
MRPL55-220ENST00000411464 ABCB10Q9NRK6 738 aa13.53□□□□□ -0.24
MRPL55-220ENST00000411464 OR5B21A6NL26 309 aa13.52□□□□□ -0.25
MRPL55-220ENST00000411464 PRR23D1E9PI22 279 aaPredicted RBP13.52□□□□□ -0.25
MRPL55-220ENST00000411464 H3BN98 237 aa13.52□□□□□ -0.25
MRPL55-220ENST00000411464 GSC2O15499 205 aa13.52□□□□□ -0.25
MRPL55-220ENST00000411464 SELENOFO60613 162 aa13.52□□□□□ -0.25
MRPL55-220ENST00000411464 PRR23D2P0DMB1 279 aaPredicted RBP13.52□□□□□ -0.25
MRPL55-220ENST00000411464 FAHP16930 419 aa13.52□□□□□ -0.25
MRPL55-220ENST00000411464 PRDX2P32119 198 aa13.52□□□□□ -0.25
MRPL55-220ENST00000411464 MAGEA2P43356 314 aa13.52□□□□□ -0.25
MRPL55-220ENST00000411464 RAB13P51153 203 aa13.52□□□□□ -0.25
MRPL55-220ENST00000411464 ERVFRD-1P60508 538 aa13.52□□□□□ -0.25
MRPL55-220ENST00000411464 CNN3Q15417 329 aaKnown RBP13.52□□□□□ -0.25
MRPL55-220ENST00000411464 SMIM21Q3B7S5 101 aa13.52□□□□□ -0.25
MRPL55-220ENST00000411464 PLA1AQ53H76 456 aa13.52□□□□□ -0.25
MRPL55-220ENST00000411464 DMRTC1Q5HYR2 192 aa13.52□□□□□ -0.25
MRPL55-220ENST00000411464 ACP7Q6ZNF0 438 aa13.52□□□□□ -0.25
MRPL55-220ENST00000411464 MOB3CQ70IA8 216 aa13.52□□□□□ -0.25
MRPL55-220ENST00000411464 KRT77Q7Z794 578 aa13.52□□□□□ -0.25
MRPL55-220ENST00000411464 COMMD2Q86X83 199 aa13.52□□□□□ -0.25
MRPL55-220ENST00000411464 Q8N2B8 174 aa13.52□□□□□ -0.25
MRPL55-220ENST00000411464 ZNF561Q8N587 486 aa13.52□□□□□ -0.25
MRPL55-220ENST00000411464 C11orf42Q8N5U0 333 aa13.52□□□□□ -0.25
MRPL55-220ENST00000411464 IQCF1Q8N6M8 205 aa13.52□□□□□ -0.25
MRPL55-220ENST00000411464 CD177Q8N6Q3 437 aa13.52□□□□□ -0.25
MRPL55-220ENST00000411464 ITFG2Q969R8 447 aa13.52□□□□□ -0.25
MRPL55-220ENST00000411464 CITED2Q99967 270 aaPredicted RBP13.52□□□□□ -0.25
MRPL55-220ENST00000411464 PRSS22Q9GZN4 317 aa13.52□□□□□ -0.25
MRPL55-220ENST00000411464 TCF19Q9Y242 345 aa13.52□□□□□ -0.25
MRPL55-220ENST00000411464 NBEAL2Q6ZNJ1 2754 aa13.51□□□□□ -0.25
MRPL55-220ENST00000411464 MEGF11A6BM72 1044 aa13.51□□□□□ -0.25
MRPL55-220ENST00000411464 FAM90A8PA6NJQ4 464 aa13.51□□□□□ -0.25
MRPL55-220ENST00000411464 CCL3L1P16619 93 aa13.51□□□□□ -0.25
MRPL55-220ENST00000411464 RIPPLY1Q0D2K3 151 aa13.51□□□□□ -0.25
MRPL55-220ENST00000411464 ARSJQ5FYB0 599 aaPredicted RBP13.51□□□□□ -0.25
MRPL55-220ENST00000411464 OR2T5Q6IEZ7 315 aa13.51□□□□□ -0.25
MRPL55-220ENST00000411464 PLBD1Q6P4A8 553 aa13.51□□□□□ -0.25
MRPL55-220ENST00000411464 C16orf89Q6UX73 402 aa13.51□□□□□ -0.25
MRPL55-220ENST00000411464 CD300LDQ6UXZ3 194 aa13.51□□□□□ -0.25
MRPL55-220ENST00000411464 ZNF782Q6ZMW2 699 aaPredicted RBP13.51□□□□□ -0.25
MRPL55-220ENST00000411464 KRT74Q7RTS7 529 aa13.51□□□□□ -0.25
MRPL55-220ENST00000411464 LHFPL4Q7Z7J7 247 aa13.51□□□□□ -0.25
MRPL55-220ENST00000411464 DEFB107AQ8IZN7 70 aa13.51□□□□□ -0.25
MRPL55-220ENST00000411464 OR2T29Q8NH02 315 aa13.51□□□□□ -0.25
MRPL55-220ENST00000411464 RPS4Y2Q8TD47 263 aa13.51□□□□□ -0.25
MRPL55-220ENST00000411464 OR5M11Q96RB7 305 aa13.51□□□□□ -0.25
MRPL55-220ENST00000411464 NDE1Q9NXR1 346 aa13.51□□□□□ -0.25
MRPL55-220ENST00000411464 ACTR3BQ9P1U1 418 aa13.51□□□□□ -0.25
MRPL55-220ENST00000411464 PITPNC1Q9UKF7 332 aa13.51□□□□□ -0.25
MRPL55-220ENST00000411464 NOTCH3Q9UM47 2321 aa13.5□□□□□ -0.25
MRPL55-220ENST00000411464 A0A0U1RQV5 110 aa13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 54.4 ms