RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 WWTR1Q9GZV5 400 aa10.64□□□□□ -0.71
HMGB1-206ENST00000405805 HIPK2Q9H2X6 1198 aa10.64□□□□□ -0.71
HMGB1-206ENST00000405805 NPDC1Q9NQX5 325 aaPredicted RBP10.64□□□□□ -0.71
HMGB1-206ENST00000405805 DOK5Q9P104 306 aa10.64□□□□□ -0.71
HMGB1-206ENST00000405805 A0A1W2PNV4 684 aa10.63□□□□□ -0.71
HMGB1-206ENST00000405805 GNRHRP30968 328 aa10.63□□□□□ -0.71
HMGB1-206ENST00000405805 KRTDAPP60985 99 aa10.63□□□□□ -0.71
HMGB1-206ENST00000405805 TESK1Q15569 626 aa10.63□□□□□ -0.71
HMGB1-206ENST00000405805 SYT13Q7L8C5 426 aa10.63□□□□□ -0.71
HMGB1-206ENST00000405805 C20orf196Q8IYI0 205 aa10.63□□□□□ -0.71
HMGB1-206ENST00000405805 IGHV3-15A0A0B4J1V0 119 aa10.63□□□□□ -0.71
HMGB1-206ENST00000405805 TGFBR3LH3BV60 316 aa10.63□□□□□ -0.71
HMGB1-206ENST00000405805 J3QRE1 110 aa10.63□□□□□ -0.71
HMGB1-206ENST00000405805 DAP3P51398 398 aaKnown RBP10.63□□□□□ -0.71
HMGB1-206ENST00000405805 YPEL5P62699 121 aa10.63□□□□□ -0.71
HMGB1-206ENST00000405805 MIDNQ504T8 468 aa10.63□□□□□ -0.71
HMGB1-206ENST00000405805 TMEM182Q6ZP80 229 aaPredicted RBP10.63□□□□□ -0.71
HMGB1-206ENST00000405805 GTF2H5Q6ZYL4 71 aa10.63□□□□□ -0.71
HMGB1-206ENST00000405805 ATG4DQ86TL0 474 aaPredicted RBP10.63□□□□□ -0.71
HMGB1-206ENST00000405805 SGPP2Q8IWX5 399 aa10.63□□□□□ -0.71
HMGB1-206ENST00000405805 OR51B6Q9H340 312 aa10.63□□□□□ -0.71
HMGB1-206ENST00000405805 MMP26Q9NRE1 261 aa10.63□□□□□ -0.71
HMGB1-206ENST00000405805 TANC1Q9C0D5 1861 aa10.63□□□□□ -0.71
HMGB1-206ENST00000405805 A8MXK9 166 aa10.63□□□□□ -0.71
HMGB1-206ENST00000405805 C2CD4DB7Z1M9 353 aa10.63□□□□□ -0.71
HMGB1-206ENST00000405805 RER1O15258 196 aa10.63□□□□□ -0.71
HMGB1-206ENST00000405805 FOXS1O43638 330 aa10.63□□□□□ -0.71
HMGB1-206ENST00000405805 ANGPTL7O43827 346 aa10.63□□□□□ -0.71
HMGB1-206ENST00000405805 HERV-K104P61576 105 aa10.63□□□□□ -0.71
HMGB1-206ENST00000405805 RPL19P84098 196 aaKnown RBP10.63□□□□□ -0.71
HMGB1-206ENST00000405805 HSF1Q00613 529 aa10.63□□□□□ -0.71
HMGB1-206ENST00000405805 FOXO1Q12778 655 aa10.63□□□□□ -0.71
HMGB1-206ENST00000405805 IL10RAQ13651 578 aa10.63□□□□□ -0.71
HMGB1-206ENST00000405805 KIAA0895LQ68EN5 471 aa10.63□□□□□ -0.71
HMGB1-206ENST00000405805 CDC20BQ86Y33 519 aa10.63□□□□□ -0.71
HMGB1-206ENST00000405805 TXNIPQ9H3M7 391 aa10.63□□□□□ -0.71
HMGB1-206ENST00000405805 NXT1Q9UKK6 140 aaKnown RBP10.63□□□□□ -0.71
HMGB1-206ENST00000405805 KCNK7Q9Y2U2 307 aa10.63□□□□□ -0.71
HMGB1-206ENST00000405805 A6NIZ1 184 aa10.62□□□□□ -0.71
HMGB1-206ENST00000405805 MPTX1A8MV57 137 aa10.62□□□□□ -0.71
HMGB1-206ENST00000405805 CDC34P49427 236 aaPredicted RBP10.62□□□□□ -0.71
HMGB1-206ENST00000405805 CLDN17P56750 224 aa10.62□□□□□ -0.71
HMGB1-206ENST00000405805 MGAT2Q10469 447 aa10.62□□□□□ -0.71
HMGB1-206ENST00000405805 ZNF141Q15928 474 aa10.62□□□□□ -0.71
HMGB1-206ENST00000405805 TAF9Q16594 264 aa10.62□□□□□ -0.71
HMGB1-206ENST00000405805 FHL5Q5TD97 284 aa10.62□□□□□ -0.71
HMGB1-206ENST00000405805 C11orf40Q8WZ69 217 aa10.62□□□□□ -0.71
HMGB1-206ENST00000405805 GNG13Q9P2W3 67 aa10.62□□□□□ -0.71
HMGB1-206ENST00000405805 EP300Q09472 2414 aaPredicted RBP10.62□□□□□ -0.71
HMGB1-206ENST00000405805 DOCK7Q96N67 2140 aa10.62□□□□□ -0.71
HMGB1-206ENST00000405805 PHF3Q92576 2039 aaKnown RBP10.62□□□□□ -0.71
HMGB1-206ENST00000405805 IGKV1D-42A0A075B6H8 117 aa10.62□□□□□ -0.71
HMGB1-206ENST00000405805 C9orf170A2RU37 121 aa10.62□□□□□ -0.71
HMGB1-206ENST00000405805 DBX1A6NMT0 343 aa10.62□□□□□ -0.71
HMGB1-206ENST00000405805 HMSDA8MTL9 139 aa10.62□□□□□ -0.71
HMGB1-206ENST00000405805 IGHV3-9P01782 118 aa10.62□□□□□ -0.71
HMGB1-206ENST00000405805 EPHA1P21709 976 aa10.62□□□□□ -0.71
HMGB1-206ENST00000405805 RPUSD3Q6P087 351 aaKnown RBP10.62□□□□□ -0.71
HMGB1-206ENST00000405805 OGFOD3Q6PK18 319 aa10.62□□□□□ -0.71
HMGB1-206ENST00000405805 PRR18Q8N4B5 295 aa10.62□□□□□ -0.71
HMGB1-206ENST00000405805 TMEM217Q8N7C4 229 aa10.62□□□□□ -0.71
HMGB1-206ENST00000405805 RNF128Q8TEB7 428 aa10.62□□□□□ -0.71
HMGB1-206ENST00000405805 DDIT4LQ96D03 193 aa10.62□□□□□ -0.71
HMGB1-206ENST00000405805 LAT2Q9GZY6 243 aa10.62□□□□□ -0.71
HMGB1-206ENST00000405805 SLC2A4RGQ9NR83 387 aa10.62□□□□□ -0.71
HMGB1-206ENST00000405805 ZDHHC8Q9ULC8 765 aa10.62□□□□□ -0.71
HMGB1-206ENST00000405805 MMP17Q9ULZ9 603 aa10.62□□□□□ -0.71
HMGB1-206ENST00000405805 VSIG4Q9Y279 399 aa10.62□□□□□ -0.71
HMGB1-206ENST00000405805 SPTA1P02549 2419 aa10.62□□□□□ -0.71
HMGB1-206ENST00000405805 XKRY2A2RUG3 117 aa10.62□□□□□ -0.71
HMGB1-206ENST00000405805 ZNF727A8MUV8 499 aa10.62□□□□□ -0.71
HMGB1-206ENST00000405805 H0Y8G0 127 aa10.62□□□□□ -0.71
HMGB1-206ENST00000405805 TNFRSF10CO14798 259 aa10.62□□□□□ -0.71
HMGB1-206ENST00000405805 SOCS1O15524 211 aa10.62□□□□□ -0.71
HMGB1-206ENST00000405805 DBHP09172 617 aa10.62□□□□□ -0.71
HMGB1-206ENST00000405805 CD38P28907 300 aa10.62□□□□□ -0.71
HMGB1-206ENST00000405805 GPR3P46089 330 aa10.62□□□□□ -0.71
HMGB1-206ENST00000405805 RAB32Q13637 225 aa10.62□□□□□ -0.71
HMGB1-206ENST00000405805 H1FNTQ75WM6 255 aaPredicted RBP10.62□□□□□ -0.71
HMGB1-206ENST00000405805 CLEC1AQ8NC01 280 aa10.62□□□□□ -0.71
HMGB1-206ENST00000405805 GTF3AQ92664 365 aaKnown RBP10.62□□□□□ -0.71
HMGB1-206ENST00000405805 ARHGAP5-AS1Q96IT6 56 aa10.62□□□□□ -0.71
HMGB1-206ENST00000405805 TECTBQ96PL2 329 aa10.62□□□□□ -0.71
HMGB1-206ENST00000405805 RASL12Q9NYN1 266 aa10.62□□□□□ -0.71
HMGB1-206ENST00000405805 R4GMQ9 66 aa10.62□□□□□ -0.71
HMGB1-206ENST00000405805 LOC101059948A0A1B0GTJ6 334 aa10.62□□□□□ -0.71
HMGB1-206ENST00000405805 LOC390937A0A1W2PQ73 354 aa10.62□□□□□ -0.71
HMGB1-206ENST00000405805 A6NNC1 897 aa10.62□□□□□ -0.71
HMGB1-206ENST00000405805 IFNA5P01569 189 aa10.62□□□□□ -0.71
HMGB1-206ENST00000405805 RPA2P15927 270 aa10.62□□□□□ -0.71
HMGB1-206ENST00000405805 SLC25A1P53007 311 aa10.62□□□□□ -0.71
HMGB1-206ENST00000405805 INSM1Q01101 510 aaPredicted RBP10.62□□□□□ -0.71
HMGB1-206ENST00000405805 TMPPEQ6ZT21 453 aa10.62□□□□□ -0.71
HMGB1-206ENST00000405805 GRINAQ7Z429 371 aa10.62□□□□□ -0.71
HMGB1-206ENST00000405805 PPP1R3BQ86XI6 285 aa10.62□□□□□ -0.71
HMGB1-206ENST00000405805 HIST1H2BAQ96A08 127 aa10.62□□□□□ -0.71
HMGB1-206ENST00000405805 VAMP8Q9BV40 100 aa10.62□□□□□ -0.71
HMGB1-206ENST00000405805 LRRC61Q9BV99 259 aa10.62□□□□□ -0.71
HMGB1-206ENST00000405805 SEC11CQ9BY50 192 aa10.62□□□□□ -0.71
HMGB1-206ENST00000405805 SLC5A7Q9GZV3 580 aa10.62□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 107.3 ms