RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 OR10G9Q8NGN4 311 aa10.65□□□□□ -0.71
SYNPO-202ENST00000394243 OR10G7Q8NGN6 311 aa10.65□□□□□ -0.71
SYNPO-202ENST00000394243 AKAP12Q02952 1782 aa10.64□□□□□ -0.71
SYNPO-202ENST00000394243 UPK1AO00322 258 aa10.64□□□□□ -0.71
SYNPO-202ENST00000394243 SLC25A5P05141 298 aaKnown RBP10.64□□□□□ -0.71
SYNPO-202ENST00000394243 OR5AC1P0C628 307 aa10.64□□□□□ -0.71
SYNPO-202ENST00000394243 BTG2P78543 158 aa10.64□□□□□ -0.71
SYNPO-202ENST00000394243 RAB40CQ96S21 281 aa10.64□□□□□ -0.71
SYNPO-202ENST00000394243 LAT2Q9GZY6 243 aa10.64□□□□□ -0.71
SYNPO-202ENST00000394243 PCM1Q15154 2024 aa10.64□□□□□ -0.71
SYNPO-202ENST00000394243 H3BQ15 152 aa10.64□□□□□ -0.71
SYNPO-202ENST00000394243 PRKNO60260 465 aaPredicted RBP10.64□□□□□ -0.71
SYNPO-202ENST00000394243 Q7L0L9 218 aa10.64□□□□□ -0.71
SYNPO-202ENST00000394243 RLN3Q8WXF3 142 aa10.64□□□□□ -0.71
SYNPO-202ENST00000394243 CLDN23Q96B33 292 aa10.64□□□□□ -0.71
SYNPO-202ENST00000394243 PELI1Q96FA3 418 aa10.64□□□□□ -0.71
SYNPO-202ENST00000394243 PRR13Q9NZ81 148 aa10.64□□□□□ -0.71
SYNPO-202ENST00000394243 MFNGO00587 321 aa10.64□□□□□ -0.71
SYNPO-202ENST00000394243 CD38P28907 300 aa10.64□□□□□ -0.71
SYNPO-202ENST00000394243 PRDX4Q13162 271 aa10.64□□□□□ -0.71
SYNPO-202ENST00000394243 ZDHHC23Q8IYP9 409 aa10.64□□□□□ -0.71
SYNPO-202ENST00000394243 OR1L4Q8NGR5 311 aa10.64□□□□□ -0.71
SYNPO-202ENST00000394243 GALMQ96C23 342 aa10.64□□□□□ -0.71
SYNPO-202ENST00000394243 IL20Q9NYY1 176 aa10.64□□□□□ -0.71
SYNPO-202ENST00000394243 KCNE3Q9Y6H6 103 aa10.64□□□□□ -0.71
SYNPO-202ENST00000394243 NCBP2LA6PVI3 153 aaKnown RBP10.64□□□□□ -0.71
SYNPO-202ENST00000394243 LAMTOR5O43504 91 aa10.64□□□□□ -0.71
SYNPO-202ENST00000394243 ICOSLGO75144 302 aa10.64□□□□□ -0.71
SYNPO-202ENST00000394243 RHBDL1O75783 438 aa10.64□□□□□ -0.71
SYNPO-202ENST00000394243 TCL1AP56279 114 aa10.64□□□□□ -0.71
SYNPO-202ENST00000394243 SHHQ15465 462 aa10.64□□□□□ -0.71
SYNPO-202ENST00000394243 MPV17LQ2QL34 196 aa10.64□□□□□ -0.71
SYNPO-202ENST00000394243 LINC00518Q8N0U6 118 aa10.64□□□□□ -0.71
SYNPO-202ENST00000394243 RAB24Q969Q5 203 aa10.64□□□□□ -0.71
SYNPO-202ENST00000394243 FER1L4A9Z1Z3 1794 aa10.64□□□□□ -0.71
SYNPO-202ENST00000394243 IDSB3KWA1 339 aa10.64□□□□□ -0.71
SYNPO-202ENST00000394243 SIGLEC5O15389 551 aa10.64□□□□□ -0.71
SYNPO-202ENST00000394243 BSGP35613 385 aa10.64□□□□□ -0.71
SYNPO-202ENST00000394243 ZXDAP98168 799 aa10.64□□□□□ -0.71
SYNPO-202ENST00000394243 SIGLEC14Q08ET2 396 aa10.64□□□□□ -0.71
SYNPO-202ENST00000394243 PDCD1Q15116 288 aa10.64□□□□□ -0.71
SYNPO-202ENST00000394243 GABRA6Q16445 453 aa10.64□□□□□ -0.71
SYNPO-202ENST00000394243 ABI3BPQ7Z7G0 1075 aa10.64□□□□□ -0.71
SYNPO-202ENST00000394243 TMEM230Q96A57 120 aa10.64□□□□□ -0.71
SYNPO-202ENST00000394243 SIRT7Q9NRC8 400 aa10.64□□□□□ -0.71
SYNPO-202ENST00000394243 ZFPL1O95159 310 aa10.63□□□□□ -0.71
SYNPO-202ENST00000394243 PRSS1P07477 247 aa10.63□□□□□ -0.71
SYNPO-202ENST00000394243 HIST1H1DP16402 221 aaKnown RBP10.63□□□□□ -0.71
SYNPO-202ENST00000394243 BPIFA4PQ86YQ2 179 aa10.63□□□□□ -0.71
SYNPO-202ENST00000394243 GVQW1Q8N7I0 195 aa10.63□□□□□ -0.71
SYNPO-202ENST00000394243 OR10G8Q8NGN5 311 aa10.63□□□□□ -0.71
SYNPO-202ENST00000394243 PTP4A1Q93096 173 aa10.63□□□□□ -0.71
SYNPO-202ENST00000394243 GPX7Q96SL4 187 aaPredicted RBP10.63□□□□□ -0.71
SYNPO-202ENST00000394243 C3orf85A0A1B0GTC6 90 aa10.63□□□□□ -0.71
SYNPO-202ENST00000394243 LRRC3CA6NJW4 275 aa10.63□□□□□ -0.71
SYNPO-202ENST00000394243 ZBTB42B2RXF5 422 aa10.63□□□□□ -0.71
SYNPO-202ENST00000394243 CDK2AP1O14519 115 aa10.63□□□□□ -0.71
SYNPO-202ENST00000394243 WDR38Q5JTN6 314 aa10.63□□□□□ -0.71
SYNPO-202ENST00000394243 CAMKMTQ7Z624 323 aa10.63□□□□□ -0.71
SYNPO-202ENST00000394243 MRGPREQ86SM8 312 aa10.63□□□□□ -0.71
SYNPO-202ENST00000394243 OR10AD1Q8NGE0 317 aa10.63□□□□□ -0.71
SYNPO-202ENST00000394243 OR5A2Q8NGI9 324 aa10.63□□□□□ -0.71
SYNPO-202ENST00000394243 PARD6GQ9BYG4 376 aaPredicted RBP10.63□□□□□ -0.71
SYNPO-202ENST00000394243 PLRG1O43660 514 aaKnown RBP10.63□□□□□ -0.71
SYNPO-202ENST00000394243 SELEP16581 610 aa10.63□□□□□ -0.71
SYNPO-202ENST00000394243 S100A4P26447 101 aaKnown RBP10.63□□□□□ -0.71
SYNPO-202ENST00000394243 CYB5R2Q6BCY4 276 aa10.63□□□□□ -0.71
SYNPO-202ENST00000394243 KIRREL2Q6UWL6 708 aa10.63□□□□□ -0.71
SYNPO-202ENST00000394243 ADPRHL1Q8NDY3 354 aa10.63□□□□□ -0.71
SYNPO-202ENST00000394243 OTOSQ8NHW6 89 aa10.63□□□□□ -0.71
SYNPO-202ENST00000394243 ROBO4Q8WZ75 1007 aa10.63□□□□□ -0.71
SYNPO-202ENST00000394243 ZC3HAV1LQ96H79 300 aaKnown RBP10.63□□□□□ -0.71
SYNPO-202ENST00000394243 EXOGQ9Y2C4 368 aaKnown RBP10.63□□□□□ -0.71
SYNPO-202ENST00000394243 EDIL3O43854 480 aa10.63□□□□□ -0.71
SYNPO-202ENST00000394243 ZNF273Q14593 569 aa10.63□□□□□ -0.71
SYNPO-202ENST00000394243 POM121L2Q96KW2 1035 aa10.63□□□□□ -0.71
SYNPO-202ENST00000394243 OR51M1Q9H341 326 aa10.63□□□□□ -0.71
SYNPO-202ENST00000394243 KIR3DX1Q9H7L2 352 aa10.63□□□□□ -0.71
SYNPO-202ENST00000394243 NAA60Q9H7X0 242 aa10.63□□□□□ -0.71
SYNPO-202ENST00000394243 KIAA1456Q9P272 454 aa10.63□□□□□ -0.71
SYNPO-202ENST00000394243 ZMIZ1Q9ULJ6 1067 aa10.63□□□□□ -0.71
SYNPO-202ENST00000394243 A0A096LPE4 126 aa10.63□□□□□ -0.71
SYNPO-202ENST00000394243 A0A1W2PPZ6 126 aa10.63□□□□□ -0.71
SYNPO-202ENST00000394243 CD22P20273 847 aa10.63□□□□□ -0.71
SYNPO-202ENST00000394243 YPEL5P62699 121 aa10.63□□□□□ -0.71
SYNPO-202ENST00000394243 PYCR3Q53H96 274 aa10.63□□□□□ -0.71
SYNPO-202ENST00000394243 RHBDD1Q8TEB9 315 aa10.63□□□□□ -0.71
SYNPO-202ENST00000394243 HDAC8Q9BY41 377 aa10.63□□□□□ -0.71
SYNPO-202ENST00000394243 OPN4Q9UHM6 478 aa10.63□□□□□ -0.71
SYNPO-202ENST00000394243 ZNF142P52746 1687 aaPredicted RBP10.63□□□□□ -0.71
SYNPO-202ENST00000394243 GP1BAP07359 652 aa10.63□□□□□ -0.71
SYNPO-202ENST00000394243 NUFIP2Q7Z417 695 aaKnown RBP10.63□□□□□ -0.71
SYNPO-202ENST00000394243 C20orf196Q8IYI0 205 aa10.63□□□□□ -0.71
SYNPO-202ENST00000394243 HCSTQ9UBK5 93 aa10.63□□□□□ -0.71
SYNPO-202ENST00000394243 DIRC3C9JPN6 131 aa10.62□□□□□ -0.71
SYNPO-202ENST00000394243 NRG2O14511 850 aaPredicted RBP10.62□□□□□ -0.71
SYNPO-202ENST00000394243 CDAP32320 146 aa10.62□□□□□ -0.71
SYNPO-202ENST00000394243 SPNS3Q6ZMD2 512 aa10.62□□□□□ -0.71
SYNPO-202ENST00000394243 DUSP23Q9BVJ7 150 aa10.62□□□□□ -0.71
SYNPO-202ENST00000394243 MIXL1Q9H2W2 232 aa10.62□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms