RNA–Protein interactions for RNA: ENST00000375820.8

COL4A1-201, Transcript of collagen type IV alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A1, Length 6,532 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-201ENST00000375820 TMEM30CPA0ZSE6 113 aa12.28□□□□□ -0.44
COL4A1-201ENST00000375820 AMER3Q8N944 861 aa12.28□□□□□ -0.44
COL4A1-201ENST00000375820 SLC2A9Q9NRM0 540 aa12.28□□□□□ -0.44
COL4A1-201ENST00000375820 TMEM272A0A1B0GTI8 110 aa12.28□□□□□ -0.44
COL4A1-201ENST00000375820 NGFP01138 241 aa12.28□□□□□ -0.44
COL4A1-201ENST00000375820 CSF2RBP32927 897 aa12.28□□□□□ -0.44
COL4A1-201ENST00000375820 SPACA9Q96E40 222 aaPredicted RBP12.28□□□□□ -0.44
COL4A1-201ENST00000375820 VAMP8Q9BV40 100 aa12.28□□□□□ -0.44
COL4A1-201ENST00000375820 SHROOM3Q8TF72 1996 aa12.28□□□□□ -0.44
COL4A1-201ENST00000375820 BCL2L11O43521 198 aa12.28□□□□□ -0.44
COL4A1-201ENST00000375820 OR5AL1P0C617 328 aa12.28□□□□□ -0.44
COL4A1-201ENST00000375820 GALR1P47211 349 aa12.28□□□□□ -0.44
COL4A1-201ENST00000375820 LYZP61626 148 aa12.28□□□□□ -0.44
COL4A1-201ENST00000375820 CRYBG1Q9Y4K1 1723 aa12.27□□□□□ -0.44
COL4A1-201ENST00000375820 CD40P25942 277 aa12.27□□□□□ -0.44
COL4A1-201ENST00000375820 HIST1H3AP68431 136 aa12.27□□□□□ -0.44
COL4A1-201ENST00000375820 BTLAQ7Z6A9 289 aa12.27□□□□□ -0.44
COL4A1-201ENST00000375820 CA5BP1Q8WTZ4 195 aa12.27□□□□□ -0.44
COL4A1-201ENST00000375820 YIPF6Q96EC8 236 aa12.27□□□□□ -0.44
COL4A1-201ENST00000375820 CSN3P07498 182 aa12.27□□□□□ -0.45
COL4A1-201ENST00000375820 PTBP1P26599 531 aaKnown RBP eCLIP12.27□□□□□ -0.45
COL4A1-201ENST00000375820 G6PCP35575 357 aa12.27□□□□□ -0.45
COL4A1-201ENST00000375820 CHRNA7P36544 502 aa12.27□□□□□ -0.45
COL4A1-201ENST00000375820 LPAR6P43657 344 aa12.27□□□□□ -0.45
COL4A1-201ENST00000375820 SMAD4Q13485 552 aaKnown RBP12.27□□□□□ -0.45
COL4A1-201ENST00000375820 AQP6Q13520 282 aa12.27□□□□□ -0.45
COL4A1-201ENST00000375820 MICBQ29980 383 aa12.27□□□□□ -0.45
COL4A1-201ENST00000375820 ZNF260Q3ZCT1 412 aa12.27□□□□□ -0.45
COL4A1-201ENST00000375820 RIMKLAQ8IXN7 391 aa12.27□□□□□ -0.45
COL4A1-201ENST00000375820 ZNF680Q8NEM1 530 aa12.27□□□□□ -0.45
COL4A1-201ENST00000375820 OR2D2Q9H210 308 aa12.27□□□□□ -0.45
COL4A1-201ENST00000375820 NAT8BQ9UHF3 227 aa12.27□□□□□ -0.45
COL4A1-201ENST00000375820 CAMPP49913 170 aa12.27□□□□□ -0.45
COL4A1-201ENST00000375820 ZNF117Q03924 483 aa12.27□□□□□ -0.45
COL4A1-201ENST00000375820 FNDC7Q5VTL7 733 aa12.27□□□□□ -0.45
COL4A1-201ENST00000375820 ZNF485Q8NCK3 441 aa12.27□□□□□ -0.45
COL4A1-201ENST00000375820 VN1R1Q9GZP7 353 aa12.27□□□□□ -0.45
COL4A1-201ENST00000375820 A0A0A6YYD5 115 aa12.27□□□□□ -0.45
COL4A1-201ENST00000375820 VMA21Q3ZAQ7 101 aa12.27□□□□□ -0.45
COL4A1-201ENST00000375820 HES3Q5TGS1 186 aa12.27□□□□□ -0.45
COL4A1-201ENST00000375820 FAM219AQ8IW50 185 aa12.27□□□□□ -0.45
COL4A1-201ENST00000375820 OR1B1Q8NGR6 318 aa12.27□□□□□ -0.45
COL4A1-201ENST00000375820 MRGPRDQ8TDS7 321 aa12.27□□□□□ -0.45
COL4A1-201ENST00000375820 EDARADDQ8WWZ3 215 aa12.27□□□□□ -0.45
COL4A1-201ENST00000375820 TMEM147Q9BVK8 224 aa12.27□□□□□ -0.45
COL4A1-201ENST00000375820 MMP24Q9Y5R2 645 aa12.27□□□□□ -0.45
COL4A1-201ENST00000375820 C19orf57Q0VDD7 668 aa12.27□□□□□ -0.45
COL4A1-201ENST00000375820 ZNF66Q6ZN08 573 aa12.27□□□□□ -0.45
COL4A1-201ENST00000375820 ZNF788Q6ZQV5 615 aa12.27□□□□□ -0.45
COL4A1-201ENST00000375820 A0A1B0GUH1 482 aa12.26□□□□□ -0.45
COL4A1-201ENST00000375820 DND1Q8IYX4 353 aaKnown RBP12.26□□□□□ -0.45
COL4A1-201ENST00000375820 PLA2G2FQ9BZM2 168 aa12.26□□□□□ -0.45
COL4A1-201ENST00000375820 SLC25A19Q9HC21 320 aa12.26□□□□□ -0.45
COL4A1-201ENST00000375820 SIRT3Q9NTG7 399 aaPredicted RBP12.26□□□□□ -0.45
COL4A1-201ENST00000375820 RNASEK-C17orf49H0YIS7 233 aa12.26□□□□□ -0.45
COL4A1-201ENST00000375820 DNPH1O43598 174 aa12.26□□□□□ -0.45
COL4A1-201ENST00000375820 HOXB3P14651 431 aaPredicted RBP12.26□□□□□ -0.45
COL4A1-201ENST00000375820 CEBPDP49716 269 aaPredicted RBP12.26□□□□□ -0.45
COL4A1-201ENST00000375820 SERGEFQ9UGK8 458 aa12.26□□□□□ -0.45
COL4A1-201ENST00000375820 RAB5AP20339 215 aa12.26□□□□□ -0.45
COL4A1-201ENST00000375820 B4GALNT1Q00973 533 aa12.26□□□□□ -0.45
COL4A1-201ENST00000375820 WDR38Q5JTN6 314 aa12.26□□□□□ -0.45
COL4A1-201ENST00000375820 APOBEC3DQ96AK3 386 aaPredicted RBP12.26□□□□□ -0.45
COL4A1-201ENST00000375820 POMT2Q9UKY4 750 aa12.26□□□□□ -0.45
COL4A1-201ENST00000375820 YTHDF2Q9Y5A9 579 aaKnown RBP12.26□□□□□ -0.45
COL4A1-201ENST00000375820 CELA2BP08218 269 aaPredicted RBP12.26□□□□□ -0.45
COL4A1-201ENST00000375820 RNF2Q99496 336 aa12.26□□□□□ -0.45
COL4A1-201ENST00000375820 NRTNQ99748 197 aa12.26□□□□□ -0.45
COL4A1-201ENST00000375820 RSRP1Q9BUV0 290 aa12.26□□□□□ -0.45
COL4A1-201ENST00000375820 WASHC3Q9Y3C0 194 aa12.26□□□□□ -0.45
COL4A1-201ENST00000375820 GABRG2P18507 467 aa12.26□□□□□ -0.45
COL4A1-201ENST00000375820 CD200P41217 278 aa12.26□□□□□ -0.45
COL4A1-201ENST00000375820 CCR5P51681 352 aa12.26□□□□□ -0.45
COL4A1-201ENST00000375820 FZD5Q13467 585 aa12.26□□□□□ -0.45
COL4A1-201ENST00000375820 SYS1Q8N2H4 156 aa12.26□□□□□ -0.45
COL4A1-201ENST00000375820 TAAR9Q96RI9 348 aa12.26□□□□□ -0.45
COL4A1-201ENST00000375820 RPP25Q9BUL9 199 aaKnown RBP12.26□□□□□ -0.45
COL4A1-201ENST00000375820 ASCC3Q8N3C0 2202 aaKnown RBP12.26□□□□□ -0.45
COL4A1-201ENST00000375820 KDM3BQ7LBC6 1761 aa12.25□□□□□ -0.45
COL4A1-201ENST00000375820 ERVS71-1P61550 626 aa12.25□□□□□ -0.45
COL4A1-201ENST00000375820 TCTE3Q8IZS6 198 aa12.25□□□□□ -0.45
COL4A1-201ENST00000375820 TTC9Q92623 222 aa12.25□□□□□ -0.45
COL4A1-201ENST00000375820 FAM24AA6NFZ4 105 aa12.25□□□□□ -0.45
COL4A1-201ENST00000375820 PJVKQ0ZLH3 352 aa12.25□□□□□ -0.45
COL4A1-201ENST00000375820 SPINK14Q6IE38 97 aa12.25□□□□□ -0.45
COL4A1-201ENST00000375820 C11orf87Q6NUJ2 197 aa12.25□□□□□ -0.45
COL4A1-201ENST00000375820 OR4F17Q8NGA8 305 aa12.25□□□□□ -0.45
COL4A1-201ENST00000375820 OR5D13Q8NGL4 314 aa12.25□□□□□ -0.45
COL4A1-201ENST00000375820 OR10D4PQ8NGN7 298 aa12.25□□□□□ -0.45
COL4A1-201ENST00000375820 IL22RA2Q969J5 263 aa12.25□□□□□ -0.45
COL4A1-201ENST00000375820 IGHV5-51A0A0C4DH38 117 aa12.25□□□□□ -0.45
COL4A1-201ENST00000375820 FZD6O60353 706 aa12.25□□□□□ -0.45
COL4A1-201ENST00000375820 ACTL6AO96019 429 aa12.25□□□□□ -0.45
COL4A1-201ENST00000375820 TTRP02766 147 aa12.25□□□□□ -0.45
COL4A1-201ENST00000375820 PPP1CAP62136 330 aa12.25□□□□□ -0.45
COL4A1-201ENST00000375820 LRRC29Q8WV35 223 aa12.25□□□□□ -0.45
COL4A1-201ENST00000375820 THBS4P35443 961 aa12.25□□□□□ -0.45
COL4A1-201ENST00000375820 KISS1Q15726 138 aa12.25□□□□□ -0.45
COL4A1-201ENST00000375820 TMEM229BQ8NBD8 167 aa12.25□□□□□ -0.45
COL4A1-201ENST00000375820 OR4A4PQ8NGN8 299 aa12.25□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms