RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 CD3EP07766 207 aa4.2□□□□□ -1.74
SCN1A-202ENST00000375405 SRSF4Q08170 494 aaKnown RBP4.2□□□□□ -1.74
SCN1A-202ENST00000375405 CLLU1Q5K131 121 aa4.2□□□□□ -1.74
SCN1A-202ENST00000375405 PRSS45Q7RTY3 260 aa4.2□□□□□ -1.74
SCN1A-202ENST00000375405 PDPNQ86YL7 162 aa4.2□□□□□ -1.74
SCN1A-202ENST00000375405 CADM4Q8NFZ8 388 aa4.2□□□□□ -1.74
SCN1A-202ENST00000375405 OR51F2Q8NH61 342 aa4.2□□□□□ -1.74
SCN1A-202ENST00000375405 RAB7BQ96AH8 199 aa4.2□□□□□ -1.74
SCN1A-202ENST00000375405 KCTD12Q96CX2 325 aaKnown RBP4.2□□□□□ -1.74
SCN1A-202ENST00000375405 SMIM7Q9BQ49 75 aa4.2□□□□□ -1.74
SCN1A-202ENST00000375405 INPP5KQ9BT40 448 aa4.2□□□□□ -1.74
SCN1A-202ENST00000375405 ANAPC10Q9UM13 185 aa4.2□□□□□ -1.74
SCN1A-202ENST00000375405 A0A1W2PR80 420 aa4.2□□□□□ -1.74
SCN1A-202ENST00000375405 SPINT1O43278 529 aa4.2□□□□□ -1.74
SCN1A-202ENST00000375405 LYRM1O43325 122 aa4.2□□□□□ -1.74
SCN1A-202ENST00000375405 ZNF737O75373 536 aa4.2□□□□□ -1.74
SCN1A-202ENST00000375405 CST3P01034 146 aaPredicted RBP4.2□□□□□ -1.74
SCN1A-202ENST00000375405 TAS2R38P59533 333 aa4.2□□□□□ -1.74
SCN1A-202ENST00000375405 PIP5KL1Q5T9C9 394 aa4.2□□□□□ -1.74
SCN1A-202ENST00000375405 MBNL2Q5VZF2 373 aaKnown RBP4.2□□□□□ -1.74
SCN1A-202ENST00000375405 SFTA2Q6UW10 78 aa4.2□□□□□ -1.74
SCN1A-202ENST00000375405 PHF13Q86YI8 300 aaPredicted RBP4.2□□□□□ -1.74
SCN1A-202ENST00000375405 CLRN3Q8NCR9 226 aa4.2□□□□□ -1.74
SCN1A-202ENST00000375405 TSLPQ969D9 159 aa4.2□□□□□ -1.74
SCN1A-202ENST00000375405 UBE2E2Q96LR5 201 aa4.2□□□□□ -1.74
SCN1A-202ENST00000375405 ZNF385DQ9H6B1 395 aa4.2□□□□□ -1.74
SCN1A-202ENST00000375405 GLRX2Q9NS18 164 aa4.2□□□□□ -1.74
SCN1A-202ENST00000375405 KLK4Q9Y5K2 254 aa4.2□□□□□ -1.74
SCN1A-202ENST00000375405 CSAG2Q9Y5P2 127 aa4.2□□□□□ -1.74
SCN1A-202ENST00000375405 ARHGEF5Q12774 1597 aa4.2□□□□□ -1.74
SCN1A-202ENST00000375405 ZCCHC11Q5TAX3 1644 aaKnown RBP4.2□□□□□ -1.74
SCN1A-202ENST00000375405 MADDQ8WXG6 1647 aa4.2□□□□□ -1.74
SCN1A-202ENST00000375405 CLEC18AA5D8T8 446 aa4.2□□□□□ -1.74
SCN1A-202ENST00000375405 SERINC4A6NH21 518 aa4.2□□□□□ -1.74
SCN1A-202ENST00000375405 CCL21O00585 134 aa4.2□□□□□ -1.74
SCN1A-202ENST00000375405 MAS1LP35410 378 aa4.2□□□□□ -1.74
SCN1A-202ENST00000375405 TCL1AP56279 114 aa4.2□□□□□ -1.74
SCN1A-202ENST00000375405 HBA1P69905 142 aa4.2□□□□□ -1.74
SCN1A-202ENST00000375405 PSG6Q00889 435 aa4.2□□□□□ -1.74
SCN1A-202ENST00000375405 SIX1Q15475 284 aaPredicted RBP4.2□□□□□ -1.74
SCN1A-202ENST00000375405 ELAVL1Q15717 326 aaKnown RBP4.2□□□□□ -1.74
SCN1A-202ENST00000375405 ACTBL2Q562R1 376 aa4.2□□□□□ -1.74
SCN1A-202ENST00000375405 FHL5Q5TD97 284 aa4.2□□□□□ -1.74
SCN1A-202ENST00000375405 ZFAND4Q86XD8 727 aa4.2□□□□□ -1.74
SCN1A-202ENST00000375405 CLEC18CQ8NCF0 446 aa4.2□□□□□ -1.74
SCN1A-202ENST00000375405 DLX4Q92988 240 aaPredicted RBP4.2□□□□□ -1.74
SCN1A-202ENST00000375405 RBPMSQ93062 196 aaKnown RBP4.2□□□□□ -1.74
SCN1A-202ENST00000375405 BANF2Q9H503 90 aa4.2□□□□□ -1.74
SCN1A-202ENST00000375405 IL21Q9HBE4 155 aa4.2□□□□□ -1.74
SCN1A-202ENST00000375405 ASCL3Q9NQ33 180 aa4.2□□□□□ -1.74
SCN1A-202ENST00000375405 SLC52A3Q9NQ40 469 aa4.2□□□□□ -1.74
SCN1A-202ENST00000375405 CEP170BQ9Y4F5 1589 aaPredicted RBP4.2□□□□□ -1.74
SCN1A-202ENST00000375405 TET3O43151 1660 aa4.2□□□□□ -1.74
SCN1A-202ENST00000375405 FAM221AA4D161 298 aa4.2□□□□□ -1.74
SCN1A-202ENST00000375405 CORTO00230 105 aa4.2□□□□□ -1.74
SCN1A-202ENST00000375405 GALR3O60755 368 aaPredicted RBP4.2□□□□□ -1.74
SCN1A-202ENST00000375405 GHRHP01286 108 aa4.2□□□□□ -1.74
SCN1A-202ENST00000375405 ALPLP05186 524 aa4.2□□□□□ -1.74
SCN1A-202ENST00000375405 ZBTB25P24278 435 aa4.2□□□□□ -1.74
SCN1A-202ENST00000375405 SHC1P29353 583 aa4.2□□□□□ -1.74
SCN1A-202ENST00000375405 HTRA3P83110 453 aa4.2□□□□□ -1.74
SCN1A-202ENST00000375405 ZNF322Q6U7Q0 402 aaPredicted RBP4.2□□□□□ -1.74
SCN1A-202ENST00000375405 Q6ZVL8 140 aa4.2□□□□□ -1.74
SCN1A-202ENST00000375405 LILRB4Q8NHJ6 448 aa4.2□□□□□ -1.74
SCN1A-202ENST00000375405 FAM222BQ8WU58 562 aa4.2□□□□□ -1.74
SCN1A-202ENST00000375405 SPSB4Q96A44 273 aa4.2□□□□□ -1.74
SCN1A-202ENST00000375405 ADAT3Q96EY9 351 aaPredicted RBP4.2□□□□□ -1.74
SCN1A-202ENST00000375405 FZD8Q9H461 694 aa4.2□□□□□ -1.74
SCN1A-202ENST00000375405 C1RLQ9NZP8 487 aa4.2□□□□□ -1.74
SCN1A-202ENST00000375405 ZNF337Q9Y3M9 751 aa4.2□□□□□ -1.74
SCN1A-202ENST00000375405 M0R1X1 148 aa4.19□□□□□ -1.74
SCN1A-202ENST00000375405 ST8SIA3O43173 380 aa4.19□□□□□ -1.74
SCN1A-202ENST00000375405 PIGPP57054 158 aa4.19□□□□□ -1.74
SCN1A-202ENST00000375405 KLF3P57682 345 aaPredicted RBP4.19□□□□□ -1.74
SCN1A-202ENST00000375405 ZNF85Q03923 595 aa4.19□□□□□ -1.74
SCN1A-202ENST00000375405 DPY19L2P2Q6ZN68 376 aa4.19□□□□□ -1.74
SCN1A-202ENST00000375405 PRNTQ86SH4 94 aa4.19□□□□□ -1.74
SCN1A-202ENST00000375405 RTN4RL2Q86UN3 420 aa4.19□□□□□ -1.74
SCN1A-202ENST00000375405 C3orf56Q8N813 242 aa4.19□□□□□ -1.74
SCN1A-202ENST00000375405 DEFB124Q8NES8 71 aa4.19□□□□□ -1.74
SCN1A-202ENST00000375405 OR4P4Q8NGL7 312 aa4.19□□□□□ -1.74
SCN1A-202ENST00000375405 NUDT8Q8WV74 236 aa4.19□□□□□ -1.74
SCN1A-202ENST00000375405 LHX4Q969G2 390 aa4.19□□□□□ -1.74
SCN1A-202ENST00000375405 SNRNP40Q96DI7 357 aaKnown RBP4.19□□□□□ -1.74
SCN1A-202ENST00000375405 PIK3IP1Q96FE7 263 aa4.19□□□□□ -1.74
SCN1A-202ENST00000375405 DERL3Q96Q80 235 aa4.19□□□□□ -1.74
SCN1A-202ENST00000375405 SPSB2Q99619 263 aa4.19□□□□□ -1.74
SCN1A-202ENST00000375405 SPOCK3Q9BQ16 436 aa4.19□□□□□ -1.74
SCN1A-202ENST00000375405 OR5AC2Q9NZP5 309 aa4.19□□□□□ -1.74
SCN1A-202ENST00000375405 TAAR3PQ9P1P4 343 aa4.19□□□□□ -1.74
SCN1A-202ENST00000375405 INSL5Q9Y5Q6 135 aa4.19□□□□□ -1.74
SCN1A-202ENST00000375405 ZFC3H1O60293 1989 aaKnown RBP4.19□□□□□ -1.74
SCN1A-202ENST00000375405 CPS1P31327 1500 aa4.19□□□□□ -1.74
SCN1A-202ENST00000375405 A0A1W2PQL4 384 aaPredicted RBP4.19□□□□□ -1.74
SCN1A-202ENST00000375405 C9JCJ5 164 aa4.19□□□□□ -1.74
SCN1A-202ENST00000375405 FCN3O75636 299 aa4.19□□□□□ -1.74
SCN1A-202ENST00000375405 LYPLA2O95372 231 aa4.19□□□□□ -1.74
SCN1A-202ENST00000375405 GPR6P46095 362 aaPredicted RBP4.19□□□□□ -1.74
SCN1A-202ENST00000375405 RPL29P47914 159 aaKnown RBP4.19□□□□□ -1.74
SCN1A-202ENST00000375405 CTU2Q2VPK5 515 aaKnown RBP4.19□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms