RNA–Protein interactions for RNA: ENST00000374116.3

HMGA1-203, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,848 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-203ENST00000374116 CSF1P09603 554 aa12.49□□□□□ -0.41
HMGA1-203ENST00000374116 S100PP25815 95 aa12.49□□□□□ -0.41
HMGA1-203ENST00000374116 AGTR1P30556 359 aa12.49□□□□□ -0.41
HMGA1-203ENST00000374116 EIF1AXP47813 144 aaKnown RBP12.49□□□□□ -0.41
HMGA1-203ENST00000374116 CLRN1P58418 232 aa12.49□□□□□ -0.41
HMGA1-203ENST00000374116 RAC1P63000 192 aa12.49□□□□□ -0.41
HMGA1-203ENST00000374116 H3F3AP84243 136 aa12.49□□□□□ -0.41
HMGA1-203ENST00000374116 FJX1Q86VR8 437 aa12.49□□□□□ -0.41
HMGA1-203ENST00000374116 SLC25A28Q96A46 364 aa12.49□□□□□ -0.41
HMGA1-203ENST00000374116 OXGR1Q96P68 337 aa12.49□□□□□ -0.41
HMGA1-203ENST00000374116 EMC6Q9BV81 110 aa12.49□□□□□ -0.41
HMGA1-203ENST00000374116 MFFQ9GZY8 342 aa12.49□□□□□ -0.41
HMGA1-203ENST00000374116 ZFP57Q9NU63 452 aa12.49□□□□□ -0.41
HMGA1-203ENST00000374116 ZNF835Q9Y2P0 537 aa12.49□□□□□ -0.41
HMGA1-203ENST00000374116 PCNX1Q96RV3 2341 aa12.49□□□□□ -0.41
HMGA1-203ENST00000374116 COL12A1Q99715 3063 aa12.49□□□□□ -0.41
HMGA1-203ENST00000374116 FXYD6-FXYD2A0A087WZ82 144 aa12.48□□□□□ -0.41
HMGA1-203ENST00000374116 IGHV3-15A0A0B4J1V0 119 aa12.48□□□□□ -0.41
HMGA1-203ENST00000374116 TMEM272A0A1B0GTI8 110 aa12.48□□□□□ -0.41
HMGA1-203ENST00000374116 OR14I1A6ND48 311 aa12.48□□□□□ -0.41
HMGA1-203ENST00000374116 SGCEO43556 437 aa12.48□□□□□ -0.41
HMGA1-203ENST00000374116 GLAP06280 429 aa12.48□□□□□ -0.41
HMGA1-203ENST00000374116 PTHLHP12272 177 aa12.48□□□□□ -0.41
HMGA1-203ENST00000374116 PLA2G2AP14555 144 aa12.48□□□□□ -0.41
HMGA1-203ENST00000374116 HTR2CP28335 458 aa12.48□□□□□ -0.41
HMGA1-203ENST00000374116 EFNB2P52799 333 aa12.48□□□□□ -0.41
HMGA1-203ENST00000374116 H2BFSP57053 126 aa12.48□□□□□ -0.41
HMGA1-203ENST00000374116 SSBP1Q04837 148 aaKnown RBP12.48□□□□□ -0.41
HMGA1-203ENST00000374116 RBPJQ06330 500 aa12.48□□□□□ -0.41
HMGA1-203ENST00000374116 RTL6Q6ICC9 239 aa12.48□□□□□ -0.41
HMGA1-203ENST00000374116 KLHL24Q6TFL4 600 aa12.48□□□□□ -0.41
HMGA1-203ENST00000374116 TMPPEQ6ZT21 453 aa12.48□□□□□ -0.41
HMGA1-203ENST00000374116 PLPP7Q8NBV4 271 aa12.48□□□□□ -0.41
HMGA1-203ENST00000374116 NOXO1Q8NFA2 376 aa12.48□□□□□ -0.41
HMGA1-203ENST00000374116 OR2AK2Q8NG84 335 aa12.48□□□□□ -0.41
HMGA1-203ENST00000374116 OR6X1Q8NH79 312 aa12.48□□□□□ -0.41
HMGA1-203ENST00000374116 OR10D3Q8NH80 312 aa12.48□□□□□ -0.41
HMGA1-203ENST00000374116 SLAMF6Q96DU3 332 aa12.48□□□□□ -0.41
HMGA1-203ENST00000374116 TRIB1Q96RU8 372 aa12.48□□□□□ -0.41
HMGA1-203ENST00000374116 FXYD6Q9H0Q3 95 aa12.48□□□□□ -0.41
HMGA1-203ENST00000374116 C1orf198Q9H425 327 aa12.48□□□□□ -0.41
HMGA1-203ENST00000374116 SEBOXQ9HB31 216 aaPredicted RBP12.48□□□□□ -0.41
HMGA1-203ENST00000374116 CENPMQ9NSP4 180 aa12.48□□□□□ -0.41
HMGA1-203ENST00000374116 HIVEP3Q5T1R4 2406 aa12.48□□□□□ -0.41
HMGA1-203ENST00000374116 AQP7P3A6NL99 342 aa12.48□□□□□ -0.41
HMGA1-203ENST00000374116 PRRG2O14669 202 aa12.48□□□□□ -0.41
HMGA1-203ENST00000374116 CXCL13O43927 109 aa12.48□□□□□ -0.41
HMGA1-203ENST00000374116 PMS2P2O95744 297 aa12.48□□□□□ -0.41
HMGA1-203ENST00000374116 S100A9P06702 114 aaKnown RBP12.48□□□□□ -0.41
HMGA1-203ENST00000374116 PGA4P0DJD7 388 aa12.48□□□□□ -0.41
HMGA1-203ENST00000374116 PGA3P0DJD8 388 aa12.48□□□□□ -0.41
HMGA1-203ENST00000374116 SPP1P10451 314 aa12.48□□□□□ -0.41
HMGA1-203ENST00000374116 CAPZA1P52907 286 aa12.48□□□□□ -0.41
HMGA1-203ENST00000374116 SLC35A1P78382 337 aa12.48□□□□□ -0.41
HMGA1-203ENST00000374116 NKAIN3Q8N8D7 197 aa12.48□□□□□ -0.41
HMGA1-203ENST00000374116 NANPQ8TBE9 248 aa12.48□□□□□ -0.41
HMGA1-203ENST00000374116 FOXRED1Q96CU9 486 aaPredicted RBP12.48□□□□□ -0.41
HMGA1-203ENST00000374116 WDR89Q96FK6 387 aaPredicted RBP12.48□□□□□ -0.41
HMGA1-203ENST00000374116 SRXN1Q9BYN0 137 aa12.48□□□□□ -0.41
HMGA1-203ENST00000374116 PRDM14Q9GZV8 571 aa12.48□□□□□ -0.41
HMGA1-203ENST00000374116 FAM215AQ9Y5M1 114 aa12.48□□□□□ -0.41
HMGA1-203ENST00000374116 TRAV18A0A075B6X5 111 aa12.47□□□□□ -0.41
HMGA1-203ENST00000374116 RAMP1O60894 148 aa12.47□□□□□ -0.41
HMGA1-203ENST00000374116 ZNF35P13682 527 aa12.47□□□□□ -0.41
HMGA1-203ENST00000374116 ANXA7P20073 488 aaKnown RBP12.47□□□□□ -0.41
HMGA1-203ENST00000374116 PRSS3P35030 304 aa12.47□□□□□ -0.41
HMGA1-203ENST00000374116 SRSF4Q08170 494 aaKnown RBP12.47□□□□□ -0.41
HMGA1-203ENST00000374116 ECH1Q13011 328 aa12.47□□□□□ -0.41
HMGA1-203ENST00000374116 HIST3H3Q16695 136 aa12.47□□□□□ -0.41
HMGA1-203ENST00000374116 PCGF3Q3KNV8 242 aa12.47□□□□□ -0.41
HMGA1-203ENST00000374116 GLYATL3Q5SZD4 288 aa12.47□□□□□ -0.41
HMGA1-203ENST00000374116 RHOUQ7L0Q8 258 aa12.47□□□□□ -0.41
HMGA1-203ENST00000374116 KCNRGQ8N5I3 272 aa12.47□□□□□ -0.41
HMGA1-203ENST00000374116 ADGRG7Q96K78 797 aa12.47□□□□□ -0.41
HMGA1-203ENST00000374116 DIDO1Q9BTC0 2240 aaKnown RBP12.47□□□□□ -0.41
HMGA1-203ENST00000374116 ATG5Q9H1Y0 275 aa12.47□□□□□ -0.41
HMGA1-203ENST00000374116 FAM206AQ9NX38 181 aa12.47□□□□□ -0.41
HMGA1-203ENST00000374116 A0A0A6YYH2 397 aa12.46□□□□□ -0.41
HMGA1-203ENST00000374116 LOC390937A0A1W2PQ73 354 aa12.46□□□□□ -0.41
HMGA1-203ENST00000374116 A6NJ64 397 aa12.46□□□□□ -0.41
HMGA1-203ENST00000374116 WRBO00258 174 aa12.46□□□□□ -0.41
HMGA1-203ENST00000374116 GPR31O00270 319 aa12.46□□□□□ -0.41
HMGA1-203ENST00000374116 UBE2CO00762 179 aa12.46□□□□□ -0.41
HMGA1-203ENST00000374116 SPDEFO95238 335 aa12.46□□□□□ -0.41
HMGA1-203ENST00000374116 VSIG10L2P0DP72 767 aa12.46□□□□□ -0.41
HMGA1-203ENST00000374116 SNTB1Q13884 538 aaKnown RBP12.46□□□□□ -0.41
HMGA1-203ENST00000374116 C1orf100Q5SVJ3 147 aa12.46□□□□□ -0.41
HMGA1-203ENST00000374116 SLC25A47Q6Q0C1 308 aa12.46□□□□□ -0.41
HMGA1-203ENST00000374116 OR2AJ1Q8NGZ0 328 aa12.46□□□□□ -0.41
HMGA1-203ENST00000374116 FNDC9Q8TBE3 224 aa12.46□□□□□ -0.41
HMGA1-203ENST00000374116 ROBO4Q8WZ75 1007 aa12.46□□□□□ -0.41
HMGA1-203ENST00000374116 PTX4Q96A99 478 aa12.46□□□□□ -0.41
HMGA1-203ENST00000374116 UCN2Q96RP3 112 aa12.46□□□□□ -0.41
HMGA1-203ENST00000374116 SULT2B1O00204 365 aa12.46□□□□□ -0.42
HMGA1-203ENST00000374116 P2RY10O00398 339 aa12.46□□□□□ -0.42
HMGA1-203ENST00000374116 CCL21O00585 134 aa12.46□□□□□ -0.42
HMGA1-203ENST00000374116 OR2F2O95006 317 aa12.46□□□□□ -0.42
HMGA1-203ENST00000374116 IGHV2-70P01814 119 aa12.46□□□□□ -0.42
HMGA1-203ENST00000374116 ZNF43P17038 809 aa12.46□□□□□ -0.42
HMGA1-203ENST00000374116 CARD18P57730 90 aa12.46□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms