RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 SLC7A11Q9UPY5 501 aa11.85□□□□□ -0.51
PTPRF-202ENST00000372405 ALG5Q9Y673 324 aa11.85□□□□□ -0.51
PTPRF-202ENST00000372405 PQLC2LA1A4F0 135 aa11.84□□□□□ -0.51
PTPRF-202ENST00000372405 OR5H1A6NKK0 313 aa11.84□□□□□ -0.51
PTPRF-202ENST00000372405 SSX5O60225 188 aa11.84□□□□□ -0.51
PTPRF-202ENST00000372405 SCGNO76038 276 aa11.84□□□□□ -0.51
PTPRF-202ENST00000372405 CD3DP04234 171 aa11.84□□□□□ -0.51
PTPRF-202ENST00000372405 CSF1P09603 554 aa11.84□□□□□ -0.51
PTPRF-202ENST00000372405 IL32P24001 234 aa11.84□□□□□ -0.51
PTPRF-202ENST00000372405 HOXC12P31275 282 aa11.84□□□□□ -0.51
PTPRF-202ENST00000372405 ID4P47928 161 aa11.84□□□□□ -0.51
PTPRF-202ENST00000372405 SSBP1Q04837 148 aaKnown RBP11.84□□□□□ -0.51
PTPRF-202ENST00000372405 PDZK1IP1Q13113 114 aa11.84□□□□□ -0.51
PTPRF-202ENST00000372405 NCCRP1Q6ZVX7 275 aaPredicted RBP11.84□□□□□ -0.51
PTPRF-202ENST00000372405 FJX1Q86VR8 437 aa11.84□□□□□ -0.51
PTPRF-202ENST00000372405 CSNK2A3Q8NEV1 391 aa11.84□□□□□ -0.51
PTPRF-202ENST00000372405 CCDC120Q96HB5 630 aa11.84□□□□□ -0.51
PTPRF-202ENST00000372405 ARHGAP5-AS1Q96IT6 56 aa11.84□□□□□ -0.51
PTPRF-202ENST00000372405 SFXN3Q9BWM7 321 aa11.84□□□□□ -0.51
PTPRF-202ENST00000372405 TM2D1Q9BX74 207 aa11.84□□□□□ -0.51
PTPRF-202ENST00000372405 ELL3Q9HB65 397 aaPredicted RBP11.84□□□□□ -0.51
PTPRF-202ENST00000372405 CDH20Q9HBT6 801 aa11.84□□□□□ -0.51
PTPRF-202ENST00000372405 NPAP1Q9NZP6 1156 aa11.84□□□□□ -0.51
PTPRF-202ENST00000372405 NUBP2Q9Y5Y2 271 aa11.84□□□□□ -0.51
PTPRF-202ENST00000372405 NAP1L6A6NFF2 107 aa11.83□□□□□ -0.52
PTPRF-202ENST00000372405 J3QW42 95 aa11.83□□□□□ -0.52
PTPRF-202ENST00000372405 MFNGO00587 321 aa11.83□□□□□ -0.52
PTPRF-202ENST00000372405 PRRG2O14669 202 aa11.83□□□□□ -0.52
PTPRF-202ENST00000372405 IGLV1-44P01699 117 aa11.83□□□□□ -0.52
PTPRF-202ENST00000372405 CECR9P0C854 216 aa11.83□□□□□ -0.52
PTPRF-202ENST00000372405 ZNF35P13682 527 aa11.83□□□□□ -0.52
PTPRF-202ENST00000372405 HIST1H1DP16402 221 aaKnown RBP11.83□□□□□ -0.52
PTPRF-202ENST00000372405 ATP1B3P54709 279 aa11.83□□□□□ -0.52
PTPRF-202ENST00000372405 OR2T2Q6IF00 324 aa11.83□□□□□ -0.52
PTPRF-202ENST00000372405 FBXW12Q6X9E4 464 aa11.83□□□□□ -0.52
PTPRF-202ENST00000372405 BTN2A1Q7KYR7 527 aa11.83□□□□□ -0.52
PTPRF-202ENST00000372405 OR56B1Q8NGI3 324 aa11.83□□□□□ -0.52
PTPRF-202ENST00000372405 OR51T1Q8NGJ9 327 aa11.83□□□□□ -0.52
PTPRF-202ENST00000372405 OR5L1Q8NGL2 311 aa11.83□□□□□ -0.52
PTPRF-202ENST00000372405 RAB3CQ96E17 227 aa11.83□□□□□ -0.52
PTPRF-202ENST00000372405 Q96M66 194 aa11.83□□□□□ -0.52
PTPRF-202ENST00000372405 S100A13Q99584 98 aa11.83□□□□□ -0.52
PTPRF-202ENST00000372405 URM1Q9BTM9 101 aaKnown RBP11.83□□□□□ -0.52
PTPRF-202ENST00000372405 OR2J1Q9GZK6 312 aa11.83□□□□□ -0.52
PTPRF-202ENST00000372405 NEK6Q9HC98 313 aa11.83□□□□□ -0.52
PTPRF-202ENST00000372405 MCUBQ9NWR8 336 aa11.83□□□□□ -0.52
PTPRF-202ENST00000372405 TAS2R8Q9NYW2 309 aa11.83□□□□□ -0.52
PTPRF-202ENST00000372405 ZNF581Q9P0T4 197 aa11.83□□□□□ -0.52
PTPRF-202ENST00000372405 COPZ2Q9P299 210 aa11.83□□□□□ -0.52
PTPRF-202ENST00000372405 TUBD1Q9UJT1 453 aa11.83□□□□□ -0.52
PTPRF-202ENST00000372405 SLC25A15Q9Y619 301 aa11.83□□□□□ -0.52
PTPRF-202ENST00000372405 ATRXP46100 2492 aa11.83□□□□□ -0.52
PTPRF-202ENST00000372405 SFTPBP07988 381 aa11.83□□□□□ -0.52
PTPRF-202ENST00000372405 GTF2F2P13984 249 aa11.83□□□□□ -0.52
PTPRF-202ENST00000372405 ACTBP60709 375 aa11.83□□□□□ -0.52
PTPRF-202ENST00000372405 PPP1CBP62140 327 aa11.83□□□□□ -0.52
PTPRF-202ENST00000372405 BTG1P62324 171 aa11.83□□□□□ -0.52
PTPRF-202ENST00000372405 ACTG1P63261 375 aa11.83□□□□□ -0.52
PTPRF-202ENST00000372405 CEACAM21Q3KPI0 293 aa11.83□□□□□ -0.52
PTPRF-202ENST00000372405 TRAPPC6BQ86SZ2 158 aa11.83□□□□□ -0.52
PTPRF-202ENST00000372405 ZDHHC23Q8IYP9 409 aa11.83□□□□□ -0.52
PTPRF-202ENST00000372405 GVQW1Q8N7I0 195 aa11.83□□□□□ -0.52
PTPRF-202ENST00000372405 OR8S1Q8NH09 359 aa11.83□□□□□ -0.52
PTPRF-202ENST00000372405 CPNE2Q96FN4 548 aaPredicted RBP11.83□□□□□ -0.52
PTPRF-202ENST00000372405 METTL9Q9H1A3 318 aa11.83□□□□□ -0.52
PTPRF-202ENST00000372405 FLVCR2Q9UPI3 526 aa11.83□□□□□ -0.52
PTPRF-202ENST00000372405 HEATR1Q9H583 2144 aaKnown RBP11.83□□□□□ -0.52
PTPRF-202ENST00000372405 PCNX1Q96RV3 2341 aa11.82□□□□□ -0.52
PTPRF-202ENST00000372405 IGHV1-18A0A0C4DH31 117 aa11.82□□□□□ -0.52
PTPRF-202ENST00000372405 A0A0G2JNJ9 132 aa11.82□□□□□ -0.52
PTPRF-202ENST00000372405 HTR3BO95264 441 aa11.82□□□□□ -0.52
PTPRF-202ENST00000372405 PSMB1P20618 241 aaKnown RBP11.82□□□□□ -0.52
PTPRF-202ENST00000372405 GPM6AP51674 278 aa11.82□□□□□ -0.52
PTPRF-202ENST00000372405 UCP2P55851 309 aa11.82□□□□□ -0.52
PTPRF-202ENST00000372405 MRPL49Q13405 166 aaKnown RBP11.82□□□□□ -0.52
PTPRF-202ENST00000372405 RSU1Q15404 277 aa11.82□□□□□ -0.52
PTPRF-202ENST00000372405 IGFBP7Q16270 282 aa11.82□□□□□ -0.52
PTPRF-202ENST00000372405 SIGIRRQ6IA17 410 aa11.82□□□□□ -0.52
PTPRF-202ENST00000372405 AKAP14Q86UN6 197 aa11.82□□□□□ -0.52
PTPRF-202ENST00000372405 ZNF611Q8N823 705 aa11.82□□□□□ -0.52
PTPRF-202ENST00000372405 PXT1Q8NFP0 134 aa11.82□□□□□ -0.52
PTPRF-202ENST00000372405 OR4S1Q8NGB4 309 aa11.82□□□□□ -0.52
PTPRF-202ENST00000372405 DEDD2Q8WXF8 326 aa11.82□□□□□ -0.52
PTPRF-202ENST00000372405 S100PBPQ96BU1 408 aa11.82□□□□□ -0.52
PTPRF-202ENST00000372405 C20orf85Q9H1P6 137 aa11.82□□□□□ -0.52
PTPRF-202ENST00000372405 OBP2BQ9NPH6 170 aa11.82□□□□□ -0.52
PTPRF-202ENST00000372405 EIF3KQ9UBQ5 218 aaKnown RBP11.82□□□□□ -0.52
PTPRF-202ENST00000372405 Q9UFV3 132 aa11.82□□□□□ -0.52
PTPRF-202ENST00000372405 SPTA1P02549 2419 aa11.82□□□□□ -0.52
PTPRF-202ENST00000372405 GSTP1P09211 210 aaKnown RBP11.81□□□□□ -0.52
PTPRF-202ENST00000372405 AKAIN1P0CW23 69 aa11.81□□□□□ -0.52
PTPRF-202ENST00000372405 BMP5P22003 454 aa11.81□□□□□ -0.52
PTPRF-202ENST00000372405 HLA-DMAP28067 261 aa11.81□□□□□ -0.52
PTPRF-202ENST00000372405 DAZAP2Q15038 168 aaPredicted RBP11.81□□□□□ -0.52
PTPRF-202ENST00000372405 ALKBH6Q3KRA9 238 aa11.81□□□□□ -0.52
PTPRF-202ENST00000372405 STEAP1BQ6NZ63 245 aa11.81□□□□□ -0.52
PTPRF-202ENST00000372405 TMEM229BQ8NBD8 167 aa11.81□□□□□ -0.52
PTPRF-202ENST00000372405 STEAP2Q8NFT2 490 aa11.81□□□□□ -0.52
PTPRF-202ENST00000372405 OR51F2Q8NH61 342 aa11.81□□□□□ -0.52
PTPRF-202ENST00000372405 OR56B4Q8NH76 319 aa11.81□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms