RNA–Protein interactions for RNA: ENST00000370576.8

MCF2-203, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene MCF2, Length 3,688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-203ENST00000370576 F13BP05160 661 aa3.34□□□□□ -1.87
MCF2-203ENST00000370576 IL6RP08887 468 aaPredicted RBP3.34□□□□□ -1.87
MCF2-203ENST00000370576 SLC35G6P0C7Q6 338 aa3.34□□□□□ -1.87
MCF2-203ENST00000370576 TMEM225BP0DP42 221 aa3.34□□□□□ -1.87
MCF2-203ENST00000370576 VPREB1P12018 145 aa3.34□□□□□ -1.87
MCF2-203ENST00000370576 FUT3P21217 361 aa3.34□□□□□ -1.87
MCF2-203ENST00000370576 FKBP2P26885 142 aaKnown RBP3.34□□□□□ -1.87
MCF2-203ENST00000370576 DUSP1P28562 367 aa3.34□□□□□ -1.87
MCF2-203ENST00000370576 GABRA5P31644 462 aa3.34□□□□□ -1.87
MCF2-203ENST00000370576 FOXG1P55316 489 aaPredicted RBP3.34□□□□□ -1.87
MCF2-203ENST00000370576 B3GALT5-AS1P59052 145 aa3.34□□□□□ -1.87
MCF2-203ENST00000370576 EXOSC7Q15024 291 aaKnown RBP3.34□□□□□ -1.87
MCF2-203ENST00000370576 MAPK14Q16539 360 aa3.34□□□□□ -1.87
MCF2-203ENST00000370576 CYP51A1Q16850 503 aa3.34□□□□□ -1.87
MCF2-203ENST00000370576 FAM214AQ32MH5 1076 aa3.34□□□□□ -1.87
MCF2-203ENST00000370576 PLEKHN1Q494U1 663 aaPredicted RBP3.34□□□□□ -1.87
MCF2-203ENST00000370576 FAM69BQ5VUD6 431 aa3.34□□□□□ -1.87
MCF2-203ENST00000370576 ACSM5Q6NUN0 579 aa3.34□□□□□ -1.87
MCF2-203ENST00000370576 KCNIP4Q6PIL6 250 aa3.34□□□□□ -1.87
MCF2-203ENST00000370576 DPY19L2P2Q6ZN68 376 aa3.34□□□□□ -1.87
MCF2-203ENST00000370576 ERI1Q8IV48 349 aaKnown RBP3.34□□□□□ -1.87
MCF2-203ENST00000370576 SFTPA2Q8IWL1 248 aa3.34□□□□□ -1.87
MCF2-203ENST00000370576 SREK1IP1Q8N9Q2 155 aaPredicted RBP3.34□□□□□ -1.87
MCF2-203ENST00000370576 NOXO1Q8NFA2 376 aa3.34□□□□□ -1.87
MCF2-203ENST00000370576 OR8D4Q8NGM9 314 aa3.34□□□□□ -1.87
MCF2-203ENST00000370576 PIGXQ8TBF5 258 aa3.34□□□□□ -1.87
MCF2-203ENST00000370576 ACOT11Q8WXI4 607 aaPredicted RBP3.34□□□□□ -1.87
MCF2-203ENST00000370576 GHSRQ92847 366 aa3.34□□□□□ -1.87
MCF2-203ENST00000370576 FYTTD1Q96QD9 318 aaKnown RBP3.34□□□□□ -1.87
MCF2-203ENST00000370576 TSC22D3Q99576 134 aa3.34□□□□□ -1.87
MCF2-203ENST00000370576 SYT3Q9BQG1 590 aa3.34□□□□□ -1.87
MCF2-203ENST00000370576 ZNF430Q9H8G1 570 aaPredicted RBP3.34□□□□□ -1.87
MCF2-203ENST00000370576 AKIP1Q9NQ31 210 aa3.34□□□□□ -1.87
MCF2-203ENST00000370576 SLC35A3Q9Y2D2 325 aa3.34□□□□□ -1.87
MCF2-203ENST00000370576 CCDC88CQ9P219 2028 aa3.34□□□□□ -1.87
MCF2-203ENST00000370576 NUP214P35658 2090 aaPredicted RBP3.34□□□□□ -1.87
MCF2-203ENST00000370576 SPAG17Q6Q759 2223 aa3.34□□□□□ -1.87
MCF2-203ENST00000370576 IGHV1-45A0A0A0MS14 117 aa3.34□□□□□ -1.87
MCF2-203ENST00000370576 D6RAR5 112 aa3.34□□□□□ -1.87
MCF2-203ENST00000370576 PRYO14603 147 aa3.34□□□□□ -1.87
MCF2-203ENST00000370576 DLEU1O43261 78 aa3.34□□□□□ -1.87
MCF2-203ENST00000370576 ERI3O43414 337 aaKnown RBP3.34□□□□□ -1.87
MCF2-203ENST00000370576 CHST10O43529 356 aa3.34□□□□□ -1.87
MCF2-203ENST00000370576 SYT7O43581 403 aa3.34□□□□□ -1.87
MCF2-203ENST00000370576 TPST1O60507 370 aa3.34□□□□□ -1.87
MCF2-203ENST00000370576 SCGNO76038 276 aa3.34□□□□□ -1.87
MCF2-203ENST00000370576 HLA-AP01891 365 aaKnown RBP3.34□□□□□ -1.87
MCF2-203ENST00000370576 HLA-HP01893 362 aa3.34□□□□□ -1.87
MCF2-203ENST00000370576 HMGN2P05204 90 aaKnown RBP3.34□□□□□ -1.87
MCF2-203ENST00000370576 SMIM6P0DI80 62 aa3.34□□□□□ -1.87
MCF2-203ENST00000370576 GTF2F2P13984 249 aa3.34□□□□□ -1.87
MCF2-203ENST00000370576 CRISP3P54108 245 aa3.34□□□□□ -1.87
MCF2-203ENST00000370576 CDSNQ15517 529 aa3.34□□□□□ -1.87
MCF2-203ENST00000370576 FGD3Q5JSP0 725 aa3.34□□□□□ -1.87
MCF2-203ENST00000370576 DCST2Q5T1A1 773 aa3.34□□□□□ -1.87
MCF2-203ENST00000370576 WDR53Q7Z5U6 358 aaPredicted RBP3.34□□□□□ -1.87
MCF2-203ENST00000370576 MRGPRGQ86SM5 289 aa3.34□□□□□ -1.87
MCF2-203ENST00000370576 PRSS33Q8NF86 280 aa3.34□□□□□ -1.87
MCF2-203ENST00000370576 OR5L1Q8NGL2 311 aa3.34□□□□□ -1.87
MCF2-203ENST00000370576 HAVCR2Q8TDQ0 301 aa3.34□□□□□ -1.87
MCF2-203ENST00000370576 GIPC3Q8TF64 312 aa3.34□□□□□ -1.87
MCF2-203ENST00000370576 GTPBP3Q969Y2 492 aaKnown RBP3.34□□□□□ -1.87
MCF2-203ENST00000370576 MED8Q96G25 268 aa3.34□□□□□ -1.87
MCF2-203ENST00000370576 CCDC120Q96HB5 630 aa3.34□□□□□ -1.87
MCF2-203ENST00000370576 SLC38A3Q99624 504 aa3.34□□□□□ -1.87
MCF2-203ENST00000370576 Q9H521 79 aa3.34□□□□□ -1.87
MCF2-203ENST00000370576 PATZ1Q9HBE1 687 aaKnown RBP3.34□□□□□ -1.87
MCF2-203ENST00000370576 MEPEQ9NQ76 525 aaPredicted RBP3.34□□□□□ -1.87
MCF2-203ENST00000370576 NDUFB11Q9NX14 153 aa3.34□□□□□ -1.87
MCF2-203ENST00000370576 COPS7AQ9UBW8 275 aa3.34□□□□□ -1.87
MCF2-203ENST00000370576 SIGLEC7Q9Y286 467 aa3.34□□□□□ -1.87
MCF2-203ENST00000370576 MUC3AQ02505 3323 aa3.34□□□□□ -1.87
MCF2-203ENST00000370576 EYSQ5T1H1 3165 aa3.34□□□□□ -1.87
MCF2-203ENST00000370576 WDFY3Q8IZQ1 3526 aa3.34□□□□□ -1.88
MCF2-203ENST00000370576 CENPVL1A0A0U1RR11 272 aa3.34□□□□□ -1.88
MCF2-203ENST00000370576 EVPLLA8MZ36 301 aa3.34□□□□□ -1.88
MCF2-203ENST00000370576 RCBTB2O95199 551 aa3.34□□□□□ -1.88
MCF2-203ENST00000370576 SP1P08047 785 aa3.34□□□□□ -1.88
MCF2-203ENST00000370576 COX6A1P12074 109 aa3.34□□□□□ -1.88
MCF2-203ENST00000370576 CD96P40200 585 aa3.34□□□□□ -1.88
MCF2-203ENST00000370576 SRP9P49458 86 aaKnown RBP3.34□□□□□ -1.88
MCF2-203ENST00000370576 ATP1B3P54709 279 aa3.34□□□□□ -1.88
MCF2-203ENST00000370576 NSDHLQ15738 373 aa3.34□□□□□ -1.88
MCF2-203ENST00000370576 MS4A18Q3C1V0 323 aa3.34□□□□□ -1.88
MCF2-203ENST00000370576 LINC01590Q5TEZ4 76 aa3.34□□□□□ -1.88
MCF2-203ENST00000370576 PWWP2BQ6NUJ5 590 aa3.34□□□□□ -1.88
MCF2-203ENST00000370576 ZNF621Q6ZSS3 439 aa3.34□□□□□ -1.88
MCF2-203ENST00000370576 SLC34A3Q8N130 599 aa3.34□□□□□ -1.88
MCF2-203ENST00000370576 LFNGQ8NES3 379 aa3.34□□□□□ -1.88
MCF2-203ENST00000370576 OR51F2Q8NH61 342 aa3.34□□□□□ -1.88
MCF2-203ENST00000370576 SPATA3Q8NHX4 192 aa3.34□□□□□ -1.88
MCF2-203ENST00000370576 SLC7A13Q8TCU3 470 aa3.34□□□□□ -1.88
MCF2-203ENST00000370576 TMEM234Q8WY98 164 aa3.34□□□□□ -1.88
MCF2-203ENST00000370576 STMN2Q93045 179 aa3.34□□□□□ -1.88
MCF2-203ENST00000370576 SCMH1Q96GD3 660 aa3.34□□□□□ -1.88
MCF2-203ENST00000370576 TXNDC15Q96J42 360 aa3.34□□□□□ -1.88
MCF2-203ENST00000370576 ADGRG7Q96K78 797 aa3.34□□□□□ -1.88
MCF2-203ENST00000370576 ACTR6Q9GZN1 396 aa3.34□□□□□ -1.88
MCF2-203ENST00000370576 ACOT13Q9NPJ3 140 aa3.34□□□□□ -1.88
MCF2-203ENST00000370576 MGAT4AQ9UM21 535 aa3.34□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms