RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 RAD52P43351 418 aa1.97□□□□□ -2.09
VPS54-202ENST00000354504 DSCR4P56555 118 aaPredicted RBP1.97□□□□□ -2.09
VPS54-202ENST00000354504 ACY1Q03154 408 aa1.97□□□□□ -2.09
VPS54-202ENST00000354504 FCN2Q15485 313 aa1.97□□□□□ -2.09
VPS54-202ENST00000354504 C10orf91Q5T1B1 145 aa1.97□□□□□ -2.09
VPS54-202ENST00000354504 THEM4Q5T1C6 240 aa1.97□□□□□ -2.09
VPS54-202ENST00000354504 ATP1A1-AS1Q5TC04 95 aa1.97□□□□□ -2.09
VPS54-202ENST00000354504 C3orf33Q6P1S2 294 aa1.97□□□□□ -2.09
VPS54-202ENST00000354504 ARL9Q6T311 187 aa1.97□□□□□ -2.09
VPS54-202ENST00000354504 TMPRSS11AQ6ZMR5 421 aa1.97□□□□□ -2.09
VPS54-202ENST00000354504 NCCRP1Q6ZVX7 275 aaPredicted RBP1.97□□□□□ -2.09
VPS54-202ENST00000354504 FCRLAQ7L513 359 aa1.97□□□□□ -2.09
VPS54-202ENST00000354504 DCXRQ7Z4W1 244 aa1.97□□□□□ -2.09
VPS54-202ENST00000354504 PLCZ1Q86YW0 608 aa1.97□□□□□ -2.09
VPS54-202ENST00000354504 LINC00346Q8IVM7 164 aa1.97□□□□□ -2.09
VPS54-202ENST00000354504 NAXDQ8IW45 347 aa1.97□□□□□ -2.09
VPS54-202ENST00000354504 Q8N7P7 452 aa1.97□□□□□ -2.09
VPS54-202ENST00000354504 ZFP62Q8NB50 900 aaPredicted RBP1.97□□□□□ -2.09
VPS54-202ENST00000354504 ZNF671Q8TAW3 534 aa1.97□□□□□ -2.09
VPS54-202ENST00000354504 ABHD5Q8WTS1 349 aa1.97□□□□□ -2.09
VPS54-202ENST00000354504 SLC25A44Q96H78 314 aaPredicted RBP1.97□□□□□ -2.09
VPS54-202ENST00000354504 ZNF845Q96IR2 970 aaPredicted RBP1.97□□□□□ -2.09
VPS54-202ENST00000354504 KLHL15Q96M94 604 aa1.97□□□□□ -2.09
VPS54-202ENST00000354504 OXGR1Q96P68 337 aa1.97□□□□□ -2.09
VPS54-202ENST00000354504 SLC6A7Q99884 636 aa1.97□□□□□ -2.09
VPS54-202ENST00000354504 RNF126Q9BV68 326 aa1.97□□□□□ -2.09
VPS54-202ENST00000354504 LINC00470Q9BZP3 86 aa1.97□□□□□ -2.09
VPS54-202ENST00000354504 PBOV1Q9GZY1 135 aa1.97□□□□□ -2.09
VPS54-202ENST00000354504 TOLLIPQ9H0E2 274 aa1.97□□□□□ -2.09
VPS54-202ENST00000354504 HDHD2Q9H0R4 259 aa1.97□□□□□ -2.09
VPS54-202ENST00000354504 OR51V1Q9H2C8 321 aa1.97□□□□□ -2.09
VPS54-202ENST00000354504 ELOVL3Q9HB03 270 aa1.97□□□□□ -2.09
VPS54-202ENST00000354504 IL36GQ9NZH8 169 aa1.97□□□□□ -2.09
VPS54-202ENST00000354504 GNG8Q9UK08 70 aa1.97□□□□□ -2.09
VPS54-202ENST00000354504 HDGFL3Q9Y3E1 203 aa1.97□□□□□ -2.09
VPS54-202ENST00000354504 ETV7Q9Y603 341 aa1.97□□□□□ -2.09
VPS54-202ENST00000354504 CACNG2Q9Y698 323 aa1.97□□□□□ -2.09
VPS54-202ENST00000354504 KIAA2026Q5HYC2 2103 aa1.96□□□□□ -2.1
VPS54-202ENST00000354504 TRGV11A0A075B6L2 103 aa1.96□□□□□ -2.1
VPS54-202ENST00000354504 IGHV3-15A0A0B4J1V0 119 aa1.96□□□□□ -2.1
VPS54-202ENST00000354504 A0A1B0GUH1 482 aa1.96□□□□□ -2.1
VPS54-202ENST00000354504 LINC00854A0A1B0GVQ3 168 aa1.96□□□□□ -2.1
VPS54-202ENST00000354504 LOC107986453A0A1B0GWG9 222 aa1.96□□□□□ -2.1
VPS54-202ENST00000354504 PQLC2LA1A4F0 135 aa1.96□□□□□ -2.1
VPS54-202ENST00000354504 LINC00862A6NCI5 91 aa1.96□□□□□ -2.1
VPS54-202ENST00000354504 OR5H15A6NDH6 313 aa1.96□□□□□ -2.1
VPS54-202ENST00000354504 FABP12A6NFH5 140 aa1.96□□□□□ -2.1
VPS54-202ENST00000354504 MPTX1A8MV57 137 aa1.96□□□□□ -2.1
VPS54-202ENST00000354504 LEUTXA8MZ59 168 aa1.96□□□□□ -2.1
VPS54-202ENST00000354504 SLC16A7O60669 478 aa1.96□□□□□ -2.1
VPS54-202ENST00000354504 STK17BO94768 372 aa1.96□□□□□ -2.1
VPS54-202ENST00000354504 MT-ND4P03905 459 aa1.96□□□□□ -2.1
VPS54-202ENST00000354504 IL5P05113 134 aa1.96□□□□□ -2.1
VPS54-202ENST00000354504 CD3GP09693 182 aa1.96□□□□□ -2.1
VPS54-202ENST00000354504 COX5AP20674 150 aa1.96□□□□□ -2.1
VPS54-202ENST00000354504 HTR2CP28335 458 aa1.96□□□□□ -2.1
VPS54-202ENST00000354504 NBL1P41271 181 aa1.96□□□□□ -2.1
VPS54-202ENST00000354504 PTGFRP43088 359 aa1.96□□□□□ -2.1
VPS54-202ENST00000354504 DHPSP49366 369 aaPredicted RBP1.96□□□□□ -2.1
VPS54-202ENST00000354504 TDGF1P3P51864 188 aa1.96□□□□□ -2.1
VPS54-202ENST00000354504 GBX2P52951 348 aaPredicted RBP1.96□□□□□ -2.1
VPS54-202ENST00000354504 TPTEP56180 551 aa1.96□□□□□ -2.1
VPS54-202ENST00000354504 FAM3AP98173 230 aa1.96□□□□□ -2.1
VPS54-202ENST00000354504 HOXA4Q00056 320 aaPredicted RBP1.96□□□□□ -2.1
VPS54-202ENST00000354504 PAX5Q02548 391 aa1.96□□□□□ -2.1
VPS54-202ENST00000354504 MRPL28Q13084 256 aaKnown RBP1.96□□□□□ -2.1
VPS54-202ENST00000354504 IGFBP7Q16270 282 aa1.96□□□□□ -2.1
VPS54-202ENST00000354504 CARTPTQ16568 116 aa1.96□□□□□ -2.1
VPS54-202ENST00000354504 SPRNQ5BIV9 151 aa1.96□□□□□ -2.1
VPS54-202ENST00000354504 UTF1Q5T230 341 aa1.96□□□□□ -2.1
VPS54-202ENST00000354504 HES5Q5TA89 166 aa1.96□□□□□ -2.1
VPS54-202ENST00000354504 DDI2Q5TDH0 399 aa1.96□□□□□ -2.1
VPS54-202ENST00000354504 PYHIN1Q6K0P9 492 aa1.96□□□□□ -2.1
VPS54-202ENST00000354504 PCSK4Q6UW60 755 aa1.96□□□□□ -2.1
VPS54-202ENST00000354504 MOB3CQ70IA8 216 aa1.96□□□□□ -2.1
VPS54-202ENST00000354504 SLC7A5P1Q8MH63 180 aa1.96□□□□□ -2.1
VPS54-202ENST00000354504 GPR137CQ8N3F9 429 aa1.96□□□□□ -2.1
VPS54-202ENST00000354504 ZNF283Q8N7M2 679 aa1.96□□□□□ -2.1
VPS54-202ENST00000354504 C7orf57Q8NEG2 295 aa1.96□□□□□ -2.1
VPS54-202ENST00000354504 OR52B4Q8NGK2 314 aa1.96□□□□□ -2.1
VPS54-202ENST00000354504 OR6N1Q8NGY5 312 aa1.96□□□□□ -2.1
VPS54-202ENST00000354504 SYNPRQ8TBG9 265 aa1.96□□□□□ -2.1
VPS54-202ENST00000354504 DEDD2Q8WXF8 326 aa1.96□□□□□ -2.1
VPS54-202ENST00000354504 CMBLQ96DG6 245 aa1.96□□□□□ -2.1
VPS54-202ENST00000354504 SLAMF6Q96DU3 332 aa1.96□□□□□ -2.1
VPS54-202ENST00000354504 RRNAD1Q96FB5 475 aaKnown RBP1.96□□□□□ -2.1
VPS54-202ENST00000354504 SCNM1Q9BWG6 230 aa1.96□□□□□ -2.1
VPS54-202ENST00000354504 TPK1Q9H3S4 243 aa1.96□□□□□ -2.1
VPS54-202ENST00000354504 C5orf66Q9H5L9 145 aa1.96□□□□□ -2.1
VPS54-202ENST00000354504 NEK6Q9HC98 313 aa1.96□□□□□ -2.1
VPS54-202ENST00000354504 EXOSC4Q9NPD3 245 aaKnown RBP1.96□□□□□ -2.1
VPS54-202ENST00000354504 COMMD3Q9UBI1 195 aa1.96□□□□□ -2.1
VPS54-202ENST00000354504 EIF3KQ9UBQ5 218 aaKnown RBP1.96□□□□□ -2.1
VPS54-202ENST00000354504 EXTL2Q9UBQ6 330 aa1.96□□□□□ -2.1
VPS54-202ENST00000354504 RPH3AQ9Y2J0 694 aaPredicted RBP1.96□□□□□ -2.1
VPS54-202ENST00000354504 V9GY05 133 aa1.96□□□□□ -2.1
VPS54-202ENST00000354504 IGF2RP11717 2491 aa1.96□□□□□ -2.1
VPS54-202ENST00000354504 MYO18BQ8IUG5 2567 aa1.96□□□□□ -2.1
VPS54-202ENST00000354504 SPG11Q96JI7 2443 aa1.96□□□□□ -2.1
VPS54-202ENST00000354504 DHRS7CA6NNS2 312 aa1.96□□□□□ -2.1
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms