RNA–Protein interactions for RNA: ENST00000354098.7

SHMT1-203, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best) BASIC

Gene SHMT1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-203ENST00000354098 CLDN25C9JDP6 229 aa18.64■□□□□ 0.57
SHMT1-203ENST00000354098 SULT1B1O43704 296 aa18.64■□□□□ 0.57
SHMT1-203ENST00000354098 RHBDL1O75783 438 aa18.64■□□□□ 0.57
SHMT1-203ENST00000354098 SC5DO75845 299 aa18.64■□□□□ 0.57
SHMT1-203ENST00000354098 NR4A2P43354 598 aa18.64■□□□□ 0.57
SHMT1-203ENST00000354098 GPR6P46095 362 aaPredicted RBP18.64■□□□□ 0.57
SHMT1-203ENST00000354098 GP2P55259 537 aaKnown RBP18.64■□□□□ 0.57
SHMT1-203ENST00000354098 ZNF181Q2M3W8 571 aa18.64■□□□□ 0.57
SHMT1-203ENST00000354098 FAM27D1Q5T7N8 215 aa18.64■□□□□ 0.57
SHMT1-203ENST00000354098 SYT6Q5T7P8 510 aaPredicted RBP18.64■□□□□ 0.57
SHMT1-203ENST00000354098 HAGHLQ6PII5 290 aaPredicted RBP18.64■□□□□ 0.57
SHMT1-203ENST00000354098 UNQ9370/PRO34162Q6UXP9 181 aa18.64■□□□□ 0.57
SHMT1-203ENST00000354098 TMEM91Q6ZNR0 172 aa18.64■□□□□ 0.57
SHMT1-203ENST00000354098 CALHM1Q8IU99 346 aa18.64■□□□□ 0.57
SHMT1-203ENST00000354098 OR11L1Q8NGX0 322 aa18.64■□□□□ 0.57
SHMT1-203ENST00000354098 BORCS8Q96FH0 119 aa18.64■□□□□ 0.57
SHMT1-203ENST00000354098 SPACA5Q96QH8 159 aa18.64■□□□□ 0.57
SHMT1-203ENST00000354098 NOX4Q9NPH5 578 aa18.64■□□□□ 0.57
SHMT1-203ENST00000354098 RNF7Q9UBF6 113 aa18.64■□□□□ 0.57
SHMT1-203ENST00000354098 TRAV8-7A0A075B6U6 113 aa18.63■□□□□ 0.57
SHMT1-203ENST00000354098 LRRC30A6NM36 301 aa18.63■□□□□ 0.57
SHMT1-203ENST00000354098 RNF223E7ERA6 249 aa18.63■□□□□ 0.57
SHMT1-203ENST00000354098 WNT9BO14905 357 aa18.63■□□□□ 0.57
SHMT1-203ENST00000354098 MAST4O15021 2626 aa18.63■□□□□ 0.57
SHMT1-203ENST00000354098 BOLLQ8N9W6 283 aaKnown RBP18.63■□□□□ 0.57
SHMT1-203ENST00000354098 C19orf18Q8NEA5 215 aa18.63■□□□□ 0.57
SHMT1-203ENST00000354098 MUL1Q969V5 352 aa18.63■□□□□ 0.57
SHMT1-203ENST00000354098 PPIL3Q9H2H8 161 aaKnown RBP18.63■□□□□ 0.57
SHMT1-203ENST00000354098 NDUFB11Q9NX14 153 aa18.63■□□□□ 0.57
SHMT1-203ENST00000354098 WIPI2Q9Y4P8 454 aa18.63■□□□□ 0.57
SHMT1-203ENST00000354098 ITPR3Q14573 2671 aa18.63■□□□□ 0.57
SHMT1-203ENST00000354098 ZNF469Q96JG9 3925 aaPredicted RBP18.63■□□□□ 0.57
SHMT1-203ENST00000354098 TRIM64CA6NLI5 447 aa18.63■□□□□ 0.57
SHMT1-203ENST00000354098 OCMP0CE72 109 aaPredicted RBP18.63■□□□□ 0.57
SHMT1-203ENST00000354098 SMIM18P0DKX4 95 aa18.63■□□□□ 0.57
SHMT1-203ENST00000354098 IRF2P14316 349 aa18.63■□□□□ 0.57
SHMT1-203ENST00000354098 IGFBP3P17936 291 aaPredicted RBP18.63■□□□□ 0.57
SHMT1-203ENST00000354098 RAB3AP20336 220 aa18.63■□□□□ 0.57
SHMT1-203ENST00000354098 PRKACBP22694 351 aa18.63■□□□□ 0.57
SHMT1-203ENST00000354098 GABRA5P31644 462 aa18.63■□□□□ 0.57
SHMT1-203ENST00000354098 TGFBR2P37173 567 aa18.63■□□□□ 0.57
SHMT1-203ENST00000354098 FABP5Q01469 135 aa18.63■□□□□ 0.57
SHMT1-203ENST00000354098 CEACAM19Q7Z692 300 aa18.63■□□□□ 0.57
SHMT1-203ENST00000354098 CIARTQ8N365 385 aaPredicted RBP18.63■□□□□ 0.57
SHMT1-203ENST00000354098 GCSAMQ8N6F7 178 aa18.63■□□□□ 0.57
SHMT1-203ENST00000354098 DNAAF1Q8NEP3 725 aa18.63■□□□□ 0.57
SHMT1-203ENST00000354098 LRRC29Q8WV35 223 aa18.63■□□□□ 0.57
SHMT1-203ENST00000354098 AQP3Q92482 292 aa18.63■□□□□ 0.57
SHMT1-203ENST00000354098 HPS1Q92902 700 aa18.63■□□□□ 0.57
SHMT1-203ENST00000354098 SPSB1Q96BD6 273 aa18.63■□□□□ 0.57
SHMT1-203ENST00000354098 NPTNQ9Y639 398 aa18.63■□□□□ 0.57
SHMT1-203ENST00000354098 IFNL4K9M1U5 179 aa18.62■□□□□ 0.57
SHMT1-203ENST00000354098 CCRL2O00421 344 aa18.62■□□□□ 0.57
SHMT1-203ENST00000354098 SYNGR1O43759 233 aa18.62■□□□□ 0.57
SHMT1-203ENST00000354098 ALX3O95076 343 aa18.62■□□□□ 0.57
SHMT1-203ENST00000354098 EGR1P18146 543 aa18.62■□□□□ 0.57
SHMT1-203ENST00000354098 RBP2P50120 134 aa18.62■□□□□ 0.57
SHMT1-203ENST00000354098 MTCP1P56278 107 aa18.62■□□□□ 0.57
SHMT1-203ENST00000354098 CRIP3Q6Q6R5 217 aa18.62■□□□□ 0.57
SHMT1-203ENST00000354098 SPNS3Q6ZMD2 512 aa18.62■□□□□ 0.57
SHMT1-203ENST00000354098 ZNF573Q86YE8 665 aa18.62■□□□□ 0.57
SHMT1-203ENST00000354098 MAPK1IP1LQ8NDC0 245 aa18.62■□□□□ 0.57
SHMT1-203ENST00000354098 RFT1Q96AA3 541 aa18.62■□□□□ 0.57
SHMT1-203ENST00000354098 REG4Q9BYZ8 158 aa18.62■□□□□ 0.57
SHMT1-203ENST00000354098 NARFLQ9H6Q4 476 aa18.62■□□□□ 0.57
SHMT1-203ENST00000354098 A0A096LNT2 108 aa18.61■□□□□ 0.57
SHMT1-203ENST00000354098 IGHV4-61A0A0C4DH41 118 aa18.61■□□□□ 0.57
SHMT1-203ENST00000354098 MAGEA13PA6NCF6 341 aa18.61■□□□□ 0.57
SHMT1-203ENST00000354098 PLATP00750 562 aa18.61■□□□□ 0.57
SHMT1-203ENST00000354098 LHBP01229 141 aa18.61■□□□□ 0.57
SHMT1-203ENST00000354098 HCKP08631 526 aa18.61■□□□□ 0.57
SHMT1-203ENST00000354098 SLC25A16P16260 332 aa18.61■□□□□ 0.57
SHMT1-203ENST00000354098 ZMYND11Q15326 602 aa18.61■□□□□ 0.57
SHMT1-203ENST00000354098 RAB1CQ92928 201 aa18.61■□□□□ 0.57
SHMT1-203ENST00000354098 TIMD4Q96H15 378 aa18.61■□□□□ 0.57
SHMT1-203ENST00000354098 NKX3-1Q99801 234 aaPredicted RBP18.61■□□□□ 0.57
SHMT1-203ENST00000354098 CREBBPQ92793 2442 aa18.61■□□□□ 0.57
SHMT1-203ENST00000354098 AKR7A2O43488 359 aa18.6■□□□□ 0.57
SHMT1-203ENST00000354098 GPX5O75715 221 aa18.6■□□□□ 0.57
SHMT1-203ENST00000354098 RGS9O75916 674 aaPredicted RBP18.6■□□□□ 0.57
SHMT1-203ENST00000354098 IGHV2-70P01814 119 aa18.6■□□□□ 0.57
SHMT1-203ENST00000354098 MAPK3P27361 379 aaPredicted RBP18.6■□□□□ 0.57
SHMT1-203ENST00000354098 CD80P33681 288 aa18.6■□□□□ 0.57
SHMT1-203ENST00000354098 ATP1B3P54709 279 aa18.6■□□□□ 0.57
SHMT1-203ENST00000354098 GMFBP60983 142 aa18.6■□□□□ 0.57
SHMT1-203ENST00000354098 PPP3R1P63098 170 aa18.6■□□□□ 0.57
SHMT1-203ENST00000354098 TRAM1Q15629 374 aa18.6■□□□□ 0.57
SHMT1-203ENST00000354098 SFRP4Q6FHJ7 346 aaPredicted RBP18.6■□□□□ 0.57
SHMT1-203ENST00000354098 LHFPL2Q6ZUX7 228 aa18.6■□□□□ 0.57
SHMT1-203ENST00000354098 PEG10Q86TG7 708 aaKnown RBP18.6■□□□□ 0.57
SHMT1-203ENST00000354098 C1orf87Q8N0U7 546 aa18.6■□□□□ 0.57
SHMT1-203ENST00000354098 OR52N4Q8NGI2 321 aa18.6■□□□□ 0.57
SHMT1-203ENST00000354098 SEH1LQ96EE3 360 aa18.6■□□□□ 0.57
SHMT1-203ENST00000354098 J3QT63 122 aa18.6■□□□□ 0.57
SHMT1-203ENST00000354098 GABRPO00591 440 aa18.6■□□□□ 0.57
SHMT1-203ENST00000354098 FSTP19883 344 aa18.6■□□□□ 0.57
SHMT1-203ENST00000354098 PSMA1P25786 263 aaKnown RBP18.6■□□□□ 0.57
SHMT1-203ENST00000354098 CFHR2P36980 270 aa18.6■□□□□ 0.57
SHMT1-203ENST00000354098 BTG1P62324 171 aa18.6■□□□□ 0.57
SHMT1-203ENST00000354098 BATF2Q8N1L9 274 aa18.6■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms