RNA–Protein interactions for RNA: ENST00000347401.7

COL6A3-202, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,625 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-202ENST00000347401 IGSF11Q5DX21 431 aa12.02□□□□□ -0.49
COL6A3-202ENST00000347401 ZDHHC19Q8WVZ1 309 aaPredicted RBP12.02□□□□□ -0.49
COL6A3-202ENST00000347401 CD207Q9UJ71 328 aa12.02□□□□□ -0.49
COL6A3-202ENST00000347401 DCTDP32321 178 aa12.02□□□□□ -0.49
COL6A3-202ENST00000347401 LINC00303Q3SY05 128 aa12.02□□□□□ -0.49
COL6A3-202ENST00000347401 SLC16A11Q8NCK7 471 aa12.02□□□□□ -0.49
COL6A3-202ENST00000347401 PRSS3P2Q8NHM4 247 aa12.02□□□□□ -0.49
COL6A3-202ENST00000347401 PCNPQ8WW12 178 aaKnown RBP12.02□□□□□ -0.49
COL6A3-202ENST00000347401 TP53RKQ96S44 253 aa12.02□□□□□ -0.49
COL6A3-202ENST00000347401 MIOXQ9UGB7 285 aa12.02□□□□□ -0.49
COL6A3-202ENST00000347401 FITM1A5D6W6 292 aa12.02□□□□□ -0.49
COL6A3-202ENST00000347401 LEUTXA8MZ59 168 aa12.02□□□□□ -0.49
COL6A3-202ENST00000347401 EDDM3BP56851 147 aa12.02□□□□□ -0.49
COL6A3-202ENST00000347401 FUT7Q11130 342 aa12.02□□□□□ -0.49
COL6A3-202ENST00000347401 LINC00346Q8IVM7 164 aa12.02□□□□□ -0.49
COL6A3-202ENST00000347401 OR10G3Q8NGC4 313 aa12.02□□□□□ -0.49
COL6A3-202ENST00000347401 CLDN23Q96B33 292 aa12.02□□□□□ -0.49
COL6A3-202ENST00000347401 PBOV1Q9GZY1 135 aa12.02□□□□□ -0.49
COL6A3-202ENST00000347401 M0QZ24 198 aa12.01□□□□□ -0.49
COL6A3-202ENST00000347401 PPICP45877 212 aa12.01□□□□□ -0.49
COL6A3-202ENST00000347401 DEFB110Q30KQ9 67 aa12.01□□□□□ -0.49
COL6A3-202ENST00000347401 NLGN4XQ8N0W4 816 aa12.01□□□□□ -0.49
COL6A3-202ENST00000347401 APOBEC3DQ96AK3 386 aaPredicted RBP12.01□□□□□ -0.49
COL6A3-202ENST00000347401 TMPRSS13Q9BYE2 586 aa12.01□□□□□ -0.49
COL6A3-202ENST00000347401 PRSS21Q9Y6M0 314 aa12.01□□□□□ -0.49
COL6A3-202ENST00000347401 ABOP16442 354 aa12.01□□□□□ -0.49
COL6A3-202ENST00000347401 BMP5P22003 454 aa12.01□□□□□ -0.49
COL6A3-202ENST00000347401 C21orf58P58505 322 aa12.01□□□□□ -0.49
COL6A3-202ENST00000347401 KHDC3LQ587J8 217 aa12.01□□□□□ -0.49
COL6A3-202ENST00000347401 SLC25A30Q5SVS4 291 aa12.01□□□□□ -0.49
COL6A3-202ENST00000347401 OR4A47Q6IF82 309 aa12.01□□□□□ -0.49
COL6A3-202ENST00000347401 OR4A4PQ8NGN8 299 aa12.01□□□□□ -0.49
COL6A3-202ENST00000347401 TEX37Q96LM6 180 aa12.01□□□□□ -0.49
COL6A3-202ENST00000347401 MRPS2Q9Y399 296 aaKnown RBP12.01□□□□□ -0.49
COL6A3-202ENST00000347401 TMEM30CPA0ZSE6 113 aa12.01□□□□□ -0.49
COL6A3-202ENST00000347401 P2RY1P47900 373 aa12.01□□□□□ -0.49
COL6A3-202ENST00000347401 SNRPNP63162 240 aaKnown RBP12.01□□□□□ -0.49
COL6A3-202ENST00000347401 WDR74Q6RFH5 385 aaPredicted RBP12.01□□□□□ -0.49
COL6A3-202ENST00000347401 OR2D3Q8NGH3 330 aa12.01□□□□□ -0.49
COL6A3-202ENST00000347401 ADTRPQ96IZ2 230 aa12.01□□□□□ -0.49
COL6A3-202ENST00000347401 HES4Q9HCC6 221 aa12.01□□□□□ -0.49
COL6A3-202ENST00000347401 COL16A1Q07092 1604 aaPredicted RBP12.01□□□□□ -0.49
COL6A3-202ENST00000347401 HS3ST1O14792 307 aa12.01□□□□□ -0.49
COL6A3-202ENST00000347401 HLA-DRB3P79483 266 aa12.01□□□□□ -0.49
COL6A3-202ENST00000347401 PRTGQ2VWP7 1150 aa12.01□□□□□ -0.49
COL6A3-202ENST00000347401 LRRTM3Q86VH5 581 aa12.01□□□□□ -0.49
COL6A3-202ENST00000347401 BPIFA4PQ86YQ2 179 aa12.01□□□□□ -0.49
COL6A3-202ENST00000347401 DAPP1Q9UN19 280 aa12.01□□□□□ -0.49
COL6A3-202ENST00000347401 OR2T8A6NH00 312 aa12.01□□□□□ -0.49
COL6A3-202ENST00000347401 PMCHL1Q16048 86 aa12.01□□□□□ -0.49
COL6A3-202ENST00000347401 PARP11Q9NR21 331 aa12.01□□□□□ -0.49
COL6A3-202ENST00000347401 CA10Q9NS85 328 aa12.01□□□□□ -0.49
COL6A3-202ENST00000347401 VAX2Q9UIW0 290 aa12.01□□□□□ -0.49
COL6A3-202ENST00000347401 ZNF195O14628 629 aa12.01□□□□□ -0.49
COL6A3-202ENST00000347401 PNLIPRP2P54317 469 aa12.01□□□□□ -0.49
COL6A3-202ENST00000347401 OR4F17Q8NGA8 305 aa12.01□□□□□ -0.49
COL6A3-202ENST00000347401 OR5A2Q8NGI9 324 aa12.01□□□□□ -0.49
COL6A3-202ENST00000347401 XAF1Q6GPH4 301 aa12.01□□□□□ -0.49
COL6A3-202ENST00000347401 DHRS7BQ6IAN0 325 aaPredicted RBP12.01□□□□□ -0.49
COL6A3-202ENST00000347401 KMT5CQ86Y97 462 aa12.01□□□□□ -0.49
COL6A3-202ENST00000347401 SBF2Q86WG5 1849 aa12□□□□□ -0.49
COL6A3-202ENST00000347401 DNAJC25-GNG10A0A024R161 153 aa12□□□□□ -0.49
COL6A3-202ENST00000347401 C9orf170A2RU37 121 aa12□□□□□ -0.49
COL6A3-202ENST00000347401 TGFBR1P36897 503 aa12□□□□□ -0.49
COL6A3-202ENST00000347401 CRYBB2P43320 205 aa12□□□□□ -0.49
COL6A3-202ENST00000347401 MAT1AQ00266 395 aaKnown RBP12□□□□□ -0.49
COL6A3-202ENST00000347401 TMEM231Q9H6L2 316 aa12□□□□□ -0.49
COL6A3-202ENST00000347401 SH3BGRL2Q9UJC5 107 aa12□□□□□ -0.49
COL6A3-202ENST00000347401 COA3Q9Y2R0 106 aaPredicted RBP12□□□□□ -0.49
COL6A3-202ENST00000347401 TRGV10A0A0A0MS01 117 aa12□□□□□ -0.49
COL6A3-202ENST00000347401 HTR1DP28221 377 aa12□□□□□ -0.49
COL6A3-202ENST00000347401 BRS3P32247 399 aa12□□□□□ -0.49
COL6A3-202ENST00000347401 RIGQ13278 110 aa12□□□□□ -0.49
COL6A3-202ENST00000347401 BANF2Q9H503 90 aa12□□□□□ -0.49
COL6A3-202ENST00000347401 IGSF23A1L1A6 192 aa12□□□□□ -0.49
COL6A3-202ENST00000347401 OR5AL1P0C617 328 aa12□□□□□ -0.49
COL6A3-202ENST00000347401 OR2J1Q9GZK6 312 aa12□□□□□ -0.49
COL6A3-202ENST00000347401 OR51B6Q9H340 312 aa12□□□□□ -0.49
COL6A3-202ENST00000347401 PPP1R3CQ9UQK1 317 aa12□□□□□ -0.49
COL6A3-202ENST00000347401 A0A1B0GV72 72 aa12□□□□□ -0.49
COL6A3-202ENST00000347401 KLF7O75840 302 aaPredicted RBP12□□□□□ -0.49
COL6A3-202ENST00000347401 OTOSQ8NHW6 89 aa12□□□□□ -0.49
COL6A3-202ENST00000347401 TMEM147Q9BVK8 224 aa12□□□□□ -0.49
COL6A3-202ENST00000347401 ADAMTS5Q9UNA0 930 aa12□□□□□ -0.49
COL6A3-202ENST00000347401 S100A4P26447 101 aaKnown RBP12□□□□□ -0.49
COL6A3-202ENST00000347401 C12orf73Q69YU5 71 aa12□□□□□ -0.49
COL6A3-202ENST00000347401 NHLRC1Q6VVB1 395 aa12□□□□□ -0.49
COL6A3-202ENST00000347401 DEFB132Q7Z7B7 95 aa12□□□□□ -0.49
COL6A3-202ENST00000347401 MRGPRGQ86SM5 289 aa12□□□□□ -0.49
COL6A3-202ENST00000347401 LINC00596Q86U02 117 aa12□□□□□ -0.49
COL6A3-202ENST00000347401 OR5M9Q8NGP3 310 aa12□□□□□ -0.49
COL6A3-202ENST00000347401 TMEM52BQ4KMG9 183 aa12□□□□□ -0.49
COL6A3-202ENST00000347401 OR5M10Q6IEU7 315 aa12□□□□□ -0.49
COL6A3-202ENST00000347401 RBM38Q9H0Z9 239 aaKnown RBP12□□□□□ -0.49
COL6A3-202ENST00000347401 NAA60Q9H7X0 242 aa12□□□□□ -0.49
COL6A3-202ENST00000347401 CALHM2Q9HA72 323 aa12□□□□□ -0.49
COL6A3-202ENST00000347401 HTRA3P83110 453 aa11.99□□□□□ -0.49
COL6A3-202ENST00000347401 RPL18Q07020 188 aaKnown RBP11.99□□□□□ -0.49
COL6A3-202ENST00000347401 OR5C1Q8NGR4 320 aa11.99□□□□□ -0.49
COL6A3-202ENST00000347401 EXOGQ9Y2C4 368 aaKnown RBP11.99□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms