RNA–Protein interactions for RNA: ENST00000345005.8

CLK3-201, Transcript of CDC like kinase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLK3, Length 1,846 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-201ENST00000345005 MCEMP1Q8IX19 187 aa11.22□□□□□ -0.61
CLK3-201ENST00000345005 ZADH2Q8N4Q0 377 aa11.22□□□□□ -0.61
CLK3-201ENST00000345005 ZNF283Q8N7M2 679 aa11.22□□□□□ -0.61
CLK3-201ENST00000345005 OR4D10Q8NGI6 311 aa11.22□□□□□ -0.61
CLK3-201ENST00000345005 THAP6Q8TBB0 222 aa11.22□□□□□ -0.61
CLK3-201ENST00000345005 WDYHV1Q96HA8 205 aa11.22□□□□□ -0.61
CLK3-201ENST00000345005 BCO1Q9HAY6 547 aa11.22□□□□□ -0.61
CLK3-201ENST00000345005 KLK13Q9UKR3 277 aa11.22□□□□□ -0.61
CLK3-201ENST00000345005 METTL21EPA6NDL7 271 aa11.21□□□□□ -0.61
CLK3-201ENST00000345005 IGHG3P01860 377 aa11.21□□□□□ -0.61
CLK3-201ENST00000345005 SDHBP21912 280 aa11.21□□□□□ -0.61
CLK3-201ENST00000345005 CX3CR1P49238 355 aa11.21□□□□□ -0.61
CLK3-201ENST00000345005 MEOX2P50222 304 aa11.21□□□□□ -0.61
CLK3-201ENST00000345005 ZNF121P58317 390 aaPredicted RBP11.21□□□□□ -0.61
CLK3-201ENST00000345005 SNTB1Q13884 538 aaKnown RBP11.21□□□□□ -0.61
CLK3-201ENST00000345005 CEACAM16Q2WEN9 425 aa11.21□□□□□ -0.61
CLK3-201ENST00000345005 MED12LQ86YW9 2145 aa11.21□□□□□ -0.61
CLK3-201ENST00000345005 SPAG16Q8N0X2 631 aa11.21□□□□□ -0.61
CLK3-201ENST00000345005 FNDC9Q8TBE3 224 aa11.21□□□□□ -0.61
CLK3-201ENST00000345005 SEH1LQ96EE3 360 aa11.21□□□□□ -0.61
CLK3-201ENST00000345005 FBXO17Q96EF6 278 aa11.21□□□□□ -0.61
CLK3-201ENST00000345005 FOXB1Q99853 325 aa11.21□□□□□ -0.61
CLK3-201ENST00000345005 PDCD10Q9BUL8 212 aa11.21□□□□□ -0.61
CLK3-201ENST00000345005 ASPMQ8IZT6 3477 aa11.21□□□□□ -0.61
CLK3-201ENST00000345005 TRAV14DV4A0A0A6YYC5 116 aa11.21□□□□□ -0.62
CLK3-201ENST00000345005 TMEM272A0A1B0GTI8 110 aa11.21□□□□□ -0.62
CLK3-201ENST00000345005 SYT7O43581 403 aa11.21□□□□□ -0.62
CLK3-201ENST00000345005 DOK2O60496 412 aa11.21□□□□□ -0.62
CLK3-201ENST00000345005 ATG12O94817 140 aa11.21□□□□□ -0.62
CLK3-201ENST00000345005 TMIGD3P0DMS9 266 aaPredicted RBP11.21□□□□□ -0.62
CLK3-201ENST00000345005 PTHLHP12272 177 aa11.21□□□□□ -0.62
CLK3-201ENST00000345005 IGFBP3P17936 291 aaPredicted RBP11.21□□□□□ -0.62
CLK3-201ENST00000345005 HTR2CP28335 458 aa11.21□□□□□ -0.62
CLK3-201ENST00000345005 GSK3AP49840 483 aa11.21□□□□□ -0.62
CLK3-201ENST00000345005 PMP22Q01453 160 aa11.21□□□□□ -0.62
CLK3-201ENST00000345005 NAAAQ02083 359 aa11.21□□□□□ -0.62
CLK3-201ENST00000345005 FOXC1Q12948 553 aa11.21□□□□□ -0.62
CLK3-201ENST00000345005 ECH1Q13011 328 aa11.21□□□□□ -0.62
CLK3-201ENST00000345005 MICBQ29980 383 aa11.21□□□□□ -0.62
CLK3-201ENST00000345005 NRN1LQ496H8 165 aa11.21□□□□□ -0.62
CLK3-201ENST00000345005 ELP2Q6IA86 826 aa11.21□□□□□ -0.62
CLK3-201ENST00000345005 IGFL3Q6UXB1 125 aa11.21□□□□□ -0.62
CLK3-201ENST00000345005 SLC25A42Q86VD7 318 aa11.21□□□□□ -0.62
CLK3-201ENST00000345005 TUSC5Q8IXB3 177 aa11.21□□□□□ -0.62
CLK3-201ENST00000345005 NKAIN3Q8N8D7 197 aa11.21□□□□□ -0.62
CLK3-201ENST00000345005 ALKBH3Q96Q83 286 aaPredicted RBP11.21□□□□□ -0.62
CLK3-201ENST00000345005 PHB2Q99623 299 aa11.21□□□□□ -0.62
CLK3-201ENST00000345005 VRK1Q99986 396 aaPredicted RBP11.21□□□□□ -0.62
CLK3-201ENST00000345005 CALHM2Q9HA72 323 aa11.21□□□□□ -0.62
CLK3-201ENST00000345005 BARX1Q9HBU1 254 aaPredicted RBP11.21□□□□□ -0.62
CLK3-201ENST00000345005 SPRR3Q9UBC9 169 aa11.21□□□□□ -0.62
CLK3-201ENST00000345005 SLC5A6Q9Y289 635 aa11.21□□□□□ -0.62
CLK3-201ENST00000345005 URB1O60287 2271 aaKnown RBP11.21□□□□□ -0.62
CLK3-201ENST00000345005 RTTNQ86VV8 2226 aa11.2□□□□□ -0.62
CLK3-201ENST00000345005 AMY2AP04746 511 aa11.2□□□□□ -0.62
CLK3-201ENST00000345005 HAAOP46952 286 aa11.2□□□□□ -0.62
CLK3-201ENST00000345005 UBE2MP61081 183 aaKnown RBP11.2□□□□□ -0.62
CLK3-201ENST00000345005 PCBD1P61457 104 aa11.2□□□□□ -0.62
CLK3-201ENST00000345005 C3AR1Q16581 482 aa11.2□□□□□ -0.62
CLK3-201ENST00000345005 LY6G6FQ5SQ64 297 aa11.2□□□□□ -0.62
CLK3-201ENST00000345005 TSPO2Q5TGU0 170 aa11.2□□□□□ -0.62
CLK3-201ENST00000345005 LYG2Q86SG7 212 aa11.2□□□□□ -0.62
CLK3-201ENST00000345005 ADGRE4PQ86SQ3 457 aa11.2□□□□□ -0.62
CLK3-201ENST00000345005 SLC22A24Q8N4F4 322 aa11.2□□□□□ -0.62
CLK3-201ENST00000345005 TMEM185AQ8NFB2 350 aa11.2□□□□□ -0.62
CLK3-201ENST00000345005 BPIFCQ8NFQ6 507 aa11.2□□□□□ -0.62
CLK3-201ENST00000345005 SNIP1Q8TAD8 396 aaKnown RBP11.2□□□□□ -0.62
CLK3-201ENST00000345005 STOML3Q8TAV4 291 aa11.2□□□□□ -0.62
CLK3-201ENST00000345005 SPTSSAQ969W0 71 aa11.2□□□□□ -0.62
CLK3-201ENST00000345005 NUDT16L1Q9BRJ7 211 aaKnown RBP11.2□□□□□ -0.62
CLK3-201ENST00000345005 MS4A7Q9GZW8 240 aaPredicted RBP11.2□□□□□ -0.62
CLK3-201ENST00000345005 GP6Q9HCN6 339 aa11.2□□□□□ -0.62
CLK3-201ENST00000345005 PLEK2Q9NYT0 353 aa11.2□□□□□ -0.62
CLK3-201ENST00000345005 RPL36A-HNRNPH2H7BZ11 118 aa11.19□□□□□ -0.62
CLK3-201ENST00000345005 SGCEO43556 437 aa11.19□□□□□ -0.62
CLK3-201ENST00000345005 FARS2O95363 451 aaKnown RBP11.19□□□□□ -0.62
CLK3-201ENST00000345005 ITGA5P08648 1049 aa11.19□□□□□ -0.62
CLK3-201ENST00000345005 FCGR2AP12318 317 aa11.19□□□□□ -0.62
CLK3-201ENST00000345005 TAS2R31P59538 309 aa11.19□□□□□ -0.62
CLK3-201ENST00000345005 DHRS2Q13268 280 aa11.19□□□□□ -0.62
CLK3-201ENST00000345005 RAB35Q15286 201 aa11.19□□□□□ -0.62
CLK3-201ENST00000345005 FAM57BQ71RH2 274 aa11.19□□□□□ -0.62
CLK3-201ENST00000345005 ZNF584Q8IVC4 421 aa11.19□□□□□ -0.62
CLK3-201ENST00000345005 BPIFB2Q8N4F0 458 aa11.19□□□□□ -0.62
CLK3-201ENST00000345005 OR1M1Q8NGA1 313 aa11.19□□□□□ -0.62
CLK3-201ENST00000345005 OR8B12Q8NGG6 310 aa11.19□□□□□ -0.62
CLK3-201ENST00000345005 OR8S1Q8NH09 359 aa11.19□□□□□ -0.62
CLK3-201ENST00000345005 OR51E1Q8TCB6 317 aa11.19□□□□□ -0.62
CLK3-201ENST00000345005 TSNAXQ99598 290 aaKnown RBP11.19□□□□□ -0.62
CLK3-201ENST00000345005 ZNF471Q9BX82 626 aaPredicted RBP11.19□□□□□ -0.62
CLK3-201ENST00000345005 SAV1Q9H4B6 383 aaPredicted RBP11.19□□□□□ -0.62
CLK3-201ENST00000345005 MLXQ9UH92 298 aa11.19□□□□□ -0.62
CLK3-201ENST00000345005 RAB22AQ9UL26 194 aa11.19□□□□□ -0.62
CLK3-201ENST00000345005 NOP16Q9Y3C1 178 aaKnown RBP11.19□□□□□ -0.62
CLK3-201ENST00000345005 TIMM10BQ9Y5J6 103 aa11.19□□□□□ -0.62
CLK3-201ENST00000345005 AKAP13Q12802 2813 aa11.19□□□□□ -0.62
CLK3-201ENST00000345005 TMEM218A2RU14 115 aa11.19□□□□□ -0.62
CLK3-201ENST00000345005 RNF222A6NCQ9 220 aa11.19□□□□□ -0.62
CLK3-201ENST00000345005 SLC22A20A6NK97 555 aa11.19□□□□□ -0.62
CLK3-201ENST00000345005 ZNF587BE7ETH6 402 aa11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms