RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 KCTD9Q7L273 389 aa7.35□□□□□ -1.23
HMGB1-203ENST00000341423 CLIP4Q8N3C7 705 aa7.35□□□□□ -1.23
HMGB1-203ENST00000341423 MISP3Q96FF7 219 aa7.35□□□□□ -1.23
HMGB1-203ENST00000341423 SAR1AQ9NR31 198 aa7.35□□□□□ -1.23
HMGB1-203ENST00000341423 Q9UFV3 132 aa7.35□□□□□ -1.23
HMGB1-203ENST00000341423 TAF1P21675 1872 aa7.35□□□□□ -1.23
HMGB1-203ENST00000341423 ANKRD36CQ5JPF3 1778 aa7.35□□□□□ -1.23
HMGB1-203ENST00000341423 A0A087WXM4 84 aa7.35□□□□□ -1.23
HMGB1-203ENST00000341423 DLGAP1O14490 977 aa7.35□□□□□ -1.23
HMGB1-203ENST00000341423 ROM1Q03395 351 aa7.35□□□□□ -1.23
HMGB1-203ENST00000341423 RAB40AQ8WXH6 277 aa7.35□□□□□ -1.23
HMGB1-203ENST00000341423 BTBD10Q9BSF8 475 aa7.35□□□□□ -1.23
HMGB1-203ENST00000341423 SLA2Q9H6Q3 261 aa7.35□□□□□ -1.23
HMGB1-203ENST00000341423 SLC35D1Q9NTN3 355 aa7.35□□□□□ -1.23
HMGB1-203ENST00000341423 PURGQ9UJV8 347 aaKnown RBP7.35□□□□□ -1.23
HMGB1-203ENST00000341423 MYRFQ9Y2G1 1151 aa7.35□□□□□ -1.23
HMGB1-203ENST00000341423 TRBV5-4A0A0C4DH59 114 aa7.35□□□□□ -1.23
HMGB1-203ENST00000341423 PRSS37A4D1T9 235 aa7.35□□□□□ -1.23
HMGB1-203ENST00000341423 FAM189A1O60320 539 aa7.35□□□□□ -1.23
HMGB1-203ENST00000341423 FAM71E1Q6IPT2 247 aa7.35□□□□□ -1.23
HMGB1-203ENST00000341423 VN1R4Q7Z5H5 301 aa7.35□□□□□ -1.23
HMGB1-203ENST00000341423 CEACAM19Q7Z692 300 aa7.35□□□□□ -1.23
HMGB1-203ENST00000341423 OR6X1Q8NH79 312 aa7.35□□□□□ -1.23
HMGB1-203ENST00000341423 Q8WTZ3 238 aa7.35□□□□□ -1.23
HMGB1-203ENST00000341423 SNAPC3Q92966 411 aa7.35□□□□□ -1.23
HMGB1-203ENST00000341423 L3HYPDHQ96EM0 354 aa7.35□□□□□ -1.23
HMGB1-203ENST00000341423 DIRAS2Q96HU8 199 aa7.35□□□□□ -1.23
HMGB1-203ENST00000341423 BPESC1Q9GZL8 116 aa7.35□□□□□ -1.23
HMGB1-203ENST00000341423 ZDHHC2Q9UIJ5 367 aa7.35□□□□□ -1.23
HMGB1-203ENST00000341423 GDF2Q9UK05 429 aaPredicted RBP7.35□□□□□ -1.23
HMGB1-203ENST00000341423 hCG_38984A0A1B0GV85 526 aa7.34□□□□□ -1.23
HMGB1-203ENST00000341423 TMEM72A0PK05 275 aa7.34□□□□□ -1.23
HMGB1-203ENST00000341423 ZNF93P35789 620 aaPredicted RBP7.34□□□□□ -1.23
HMGB1-203ENST00000341423 TIFABQ6ZNK6 161 aa7.34□□□□□ -1.23
HMGB1-203ENST00000341423 IL17RELQ6ZVW7 336 aa7.34□□□□□ -1.23
HMGB1-203ENST00000341423 SERPINA11Q86U17 422 aa7.34□□□□□ -1.23
HMGB1-203ENST00000341423 CPNE8Q86YQ8 564 aa7.34□□□□□ -1.23
HMGB1-203ENST00000341423 ZNF525Q8N782 197 aa7.34□□□□□ -1.23
HMGB1-203ENST00000341423 NOX4Q9NPH5 578 aa7.34□□□□□ -1.23
HMGB1-203ENST00000341423 HIVEP3Q5T1R4 2406 aa7.34□□□□□ -1.23
HMGB1-203ENST00000341423 LANCL1O43813 399 aa7.34□□□□□ -1.23
HMGB1-203ENST00000341423 FAM131AQ6UXB0 335 aa7.34□□□□□ -1.23
HMGB1-203ENST00000341423 DNM1P46Q6ZS02 220 aa7.34□□□□□ -1.23
HMGB1-203ENST00000341423 MOB1BQ7L9L4 216 aa7.34□□□□□ -1.23
HMGB1-203ENST00000341423 LINC01555Q8NAE3 123 aa7.34□□□□□ -1.23
HMGB1-203ENST00000341423 KLHL30-AS1Q8NEE0 82 aa7.34□□□□□ -1.23
HMGB1-203ENST00000341423 TMEM80Q96HE8 168 aa7.34□□□□□ -1.23
HMGB1-203ENST00000341423 NMNAT3Q96T66 252 aa7.34□□□□□ -1.23
HMGB1-203ENST00000341423 AMBNQ9NP70 447 aa7.34□□□□□ -1.23
HMGB1-203ENST00000341423 SLCO1B3Q9NPD5 702 aa7.34□□□□□ -1.23
HMGB1-203ENST00000341423 DPM3Q9P2X0 92 aa7.34□□□□□ -1.23
HMGB1-203ENST00000341423 TIMM9Q9Y5J7 89 aa7.34□□□□□ -1.23
HMGB1-203ENST00000341423 ARNTLO00327 626 aa7.34□□□□□ -1.23
HMGB1-203ENST00000341423 PRSS23O95084 383 aa7.34□□□□□ -1.23
HMGB1-203ENST00000341423 NKX2-2O95096 273 aa7.34□□□□□ -1.23
HMGB1-203ENST00000341423 DTYMKP23919 212 aa7.34□□□□□ -1.23
HMGB1-203ENST00000341423 FGF12P61328 243 aa7.34□□□□□ -1.23
HMGB1-203ENST00000341423 RPL18Q07020 188 aaKnown RBP7.34□□□□□ -1.23
HMGB1-203ENST00000341423 COQ5Q5HYK3 327 aa7.34□□□□□ -1.23
HMGB1-203ENST00000341423 OR1L6Q8NGR2 347 aa7.34□□□□□ -1.23
HMGB1-203ENST00000341423 OR1K1Q8NGR3 316 aa7.34□□□□□ -1.23
HMGB1-203ENST00000341423 IL22RA2Q969J5 263 aa7.34□□□□□ -1.23
HMGB1-203ENST00000341423 POFUT1Q9H488 388 aa7.34□□□□□ -1.23
HMGB1-203ENST00000341423 CACNA1DQ01668 2161 aa7.34□□□□□ -1.23
HMGB1-203ENST00000341423 F5H697 171 aa7.34□□□□□ -1.23
HMGB1-203ENST00000341423 RRASP10301 218 aa7.34□□□□□ -1.23
HMGB1-203ENST00000341423 MC5RP33032 325 aa7.34□□□□□ -1.23
HMGB1-203ENST00000341423 FOXL2P58012 376 aa7.34□□□□□ -1.23
HMGB1-203ENST00000341423 STHQ8IWL8 128 aa7.34□□□□□ -1.23
HMGB1-203ENST00000341423 OR4B1Q8NGF8 309 aa7.34□□□□□ -1.23
HMGB1-203ENST00000341423 C12orf4Q9NQ89 552 aa7.34□□□□□ -1.23
HMGB1-203ENST00000341423 ZNF638Q14966 1978 aaKnown RBP7.34□□□□□ -1.23
HMGB1-203ENST00000341423 C17orf100A8MU93 164 aa7.34□□□□□ -1.24
HMGB1-203ENST00000341423 UPK1AO00322 258 aa7.34□□□□□ -1.24
HMGB1-203ENST00000341423 KIR2DL2P43627 348 aaPredicted RBP7.34□□□□□ -1.24
HMGB1-203ENST00000341423 TMEM249Q2WGJ8 235 aa7.34□□□□□ -1.24
HMGB1-203ENST00000341423 C3orf36Q3SXR2 165 aa7.34□□□□□ -1.24
HMGB1-203ENST00000341423 TP53I3Q53FA7 332 aa7.34□□□□□ -1.24
HMGB1-203ENST00000341423 TM4SF20Q53R12 229 aa7.34□□□□□ -1.24
HMGB1-203ENST00000341423 CYS1Q717R9 158 aa7.34□□□□□ -1.24
HMGB1-203ENST00000341423 ZNF547Q8IVP9 402 aa7.34□□□□□ -1.24
HMGB1-203ENST00000341423 ISOC1Q96CN7 298 aa7.34□□□□□ -1.24
HMGB1-203ENST00000341423 DOCK7Q96N67 2140 aa7.33□□□□□ -1.24
HMGB1-203ENST00000341423 FER1L6Q2WGJ9 1857 aa7.33□□□□□ -1.24
HMGB1-203ENST00000341423 M0QYG6 137 aa7.33□□□□□ -1.24
HMGB1-203ENST00000341423 CDIPTO14735 213 aa7.33□□□□□ -1.24
HMGB1-203ENST00000341423 FOXS1O43638 330 aa7.33□□□□□ -1.24
HMGB1-203ENST00000341423 AHCYL1O43865 530 aa7.33□□□□□ -1.24
HMGB1-203ENST00000341423 HPRP00739 348 aa7.33□□□□□ -1.24
HMGB1-203ENST00000341423 HPNP05981 417 aa7.33□□□□□ -1.24
HMGB1-203ENST00000341423 GYPBP06028 91 aa7.33□□□□□ -1.24
HMGB1-203ENST00000341423 TSPOP30536 169 aa7.33□□□□□ -1.24
HMGB1-203ENST00000341423 ACTBP60709 375 aa7.33□□□□□ -1.24
HMGB1-203ENST00000341423 ZNF672Q499Z4 452 aaPredicted RBP7.33□□□□□ -1.24
HMGB1-203ENST00000341423 SYT9Q86SS6 491 aa7.33□□□□□ -1.24
HMGB1-203ENST00000341423 DUSP18Q8NEJ0 188 aa7.33□□□□□ -1.24
HMGB1-203ENST00000341423 STXBP6Q8NFX7 210 aa7.33□□□□□ -1.24
HMGB1-203ENST00000341423 OR10V1Q8NGI7 309 aa7.33□□□□□ -1.24
HMGB1-203ENST00000341423 SSX3Q99909 188 aa7.33□□□□□ -1.24
HMGB1-203ENST00000341423 OR51E2Q9H255 320 aa7.33□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms