RNA–Protein interactions for RNA: ENST00000330494.11

CHD3-201, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CHD3, Length 7,328 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-201ENST00000330494 TMEM272A0A1B0GTI8 110 aa9.08□□□□□ -0.96
CHD3-201ENST00000330494 PEBP1P30086 187 aaKnown RBP9.08□□□□□ -0.96
CHD3-201ENST00000330494 FUT6P51993 359 aa9.08□□□□□ -0.96
CHD3-201ENST00000330494 PLAC9Q5JTB6 97 aa9.08□□□□□ -0.96
CHD3-201ENST00000330494 FAM74A1Q5RGS3 127 aa9.08□□□□□ -0.96
CHD3-201ENST00000330494 GALNT16Q8N428 558 aa9.08□□□□□ -0.96
CHD3-201ENST00000330494 SLC35E1Q96K37 410 aa9.08□□□□□ -0.96
CHD3-201ENST00000330494 LRFN5Q96NI6 719 aa9.08□□□□□ -0.96
CHD3-201ENST00000330494 C19orf43Q9BQ61 176 aa9.08□□□□□ -0.96
CHD3-201ENST00000330494 ADGRL4Q9HBW9 690 aa9.08□□□□□ -0.96
CHD3-201ENST00000330494 SEC16AO15027 2179 aa9.08□□□□□ -0.96
CHD3-201ENST00000330494 PPIHO43447 177 aaKnown RBP9.08□□□□□ -0.96
CHD3-201ENST00000330494 TOX4O94842 621 aa9.08□□□□□ -0.96
CHD3-201ENST00000330494 RAC1P63000 192 aa9.08□□□□□ -0.96
CHD3-201ENST00000330494 SMUG1Q53HV7 270 aa9.08□□□□□ -0.96
CHD3-201ENST00000330494 UBE3DQ7Z6J8 389 aa9.08□□□□□ -0.96
CHD3-201ENST00000330494 ABI3BPQ7Z7G0 1075 aa9.08□□□□□ -0.96
CHD3-201ENST00000330494 ZAR1Q86SH2 424 aa9.08□□□□□ -0.96
CHD3-201ENST00000330494 DND1Q8IYX4 353 aaKnown RBP9.08□□□□□ -0.96
CHD3-201ENST00000330494 ARHGAP5-AS1Q96IT6 56 aa9.08□□□□□ -0.96
CHD3-201ENST00000330494 C5orf67F2Z3F1 127 aa9.08□□□□□ -0.96
CHD3-201ENST00000330494 POU2F2P09086 479 aa9.08□□□□□ -0.96
CHD3-201ENST00000330494 DOK1Q99704 481 aa9.08□□□□□ -0.96
CHD3-201ENST00000330494 C12orf10Q9HB07 376 aa9.08□□□□□ -0.96
CHD3-201ENST00000330494 CYB5R1Q9UHQ9 305 aa9.08□□□□□ -0.96
CHD3-201ENST00000330494 V9GYS6 101 aa9.08□□□□□ -0.96
CHD3-201ENST00000330494 ARID2Q68CP9 1835 aa9.08□□□□□ -0.96
CHD3-201ENST00000330494 UMAD1C9J7I0 102 aa9.08□□□□□ -0.96
CHD3-201ENST00000330494 TERTO14746 1132 aaKnown RBP9.08□□□□□ -0.96
CHD3-201ENST00000330494 ARPC3O15145 178 aa9.08□□□□□ -0.96
CHD3-201ENST00000330494 TRAF3IP2O43734 574 aaPredicted RBP9.08□□□□□ -0.96
CHD3-201ENST00000330494 ARL16Q0P5N6 197 aa9.08□□□□□ -0.96
CHD3-201ENST00000330494 ASAH1Q13510 395 aa9.08□□□□□ -0.96
CHD3-201ENST00000330494 TMPRSS11FQ6ZWK6 438 aa9.08□□□□□ -0.96
CHD3-201ENST00000330494 S1PR3Q99500 378 aa9.08□□□□□ -0.96
CHD3-201ENST00000330494 ISYNA1Q9NPH2 558 aa9.08□□□□□ -0.96
CHD3-201ENST00000330494 KPTNQ9Y664 436 aa9.08□□□□□ -0.96
CHD3-201ENST00000330494 MDC1Q14676 2089 aaKnown RBP9.08□□□□□ -0.96
CHD3-201ENST00000330494 CABIN1Q9Y6J0 2220 aa9.08□□□□□ -0.96
CHD3-201ENST00000330494 PYCARD-AS1I3L0S3 204 aa9.08□□□□□ -0.96
CHD3-201ENST00000330494 C1QAP02745 245 aa9.08□□□□□ -0.96
CHD3-201ENST00000330494 LIMK1P53667 647 aa9.08□□□□□ -0.96
CHD3-201ENST00000330494 APOBEC3DQ96AK3 386 aaPredicted RBP9.08□□□□□ -0.96
CHD3-201ENST00000330494 PRO1933Q9H354 126 aa9.08□□□□□ -0.96
CHD3-201ENST00000330494 PSENENQ9NZ42 101 aa9.08□□□□□ -0.96
CHD3-201ENST00000330494 TCFL5Q9UL49 500 aa9.08□□□□□ -0.96
CHD3-201ENST00000330494 TNFSF14O43557 240 aa9.07□□□□□ -0.96
CHD3-201ENST00000330494 CTXN2P0C2S0 81 aa9.07□□□□□ -0.96
CHD3-201ENST00000330494 CTLA4P16410 223 aa9.07□□□□□ -0.96
CHD3-201ENST00000330494 KISS1Q15726 138 aa9.07□□□□□ -0.96
CHD3-201ENST00000330494 ZIC1Q15915 447 aa9.07□□□□□ -0.96
CHD3-201ENST00000330494 LINC00303Q3SY05 128 aa9.07□□□□□ -0.96
CHD3-201ENST00000330494 IER2Q9BTL4 223 aa9.07□□□□□ -0.96
CHD3-201ENST00000330494 PCED1AQ9H1Q7 454 aa9.07□□□□□ -0.96
CHD3-201ENST00000330494 MRPS18BQ9Y676 258 aaKnown RBP9.07□□□□□ -0.96
CHD3-201ENST00000330494 MN1Q10571 1320 aaPredicted RBP9.07□□□□□ -0.96
CHD3-201ENST00000330494 A0A1W2PQF6 199 aa9.07□□□□□ -0.96
CHD3-201ENST00000330494 EPPINO95925 133 aa9.07□□□□□ -0.96
CHD3-201ENST00000330494 TRAPPC2P0DI81 140 aa9.07□□□□□ -0.96
CHD3-201ENST00000330494 TRAPPC2BP0DI82 140 aa9.07□□□□□ -0.96
CHD3-201ENST00000330494 SUB1P53999 127 aaKnown RBP eCLIP9.07□□□□□ -0.96
CHD3-201ENST00000330494 C6orf201Q7Z4U5 140 aa9.07□□□□□ -0.96
CHD3-201ENST00000330494 C10orf111Q8N326 155 aa9.07□□□□□ -0.96
CHD3-201ENST00000330494 OR8U1Q8NH10 309 aa9.07□□□□□ -0.96
CHD3-201ENST00000330494 MED9Q9NWA0 146 aa9.07□□□□□ -0.96
CHD3-201ENST00000330494 A0A1W2PPV9 198 aa9.07□□□□□ -0.96
CHD3-201ENST00000330494 J3QR89 54 aa9.07□□□□□ -0.96
CHD3-201ENST00000330494 ONECUT2O95948 504 aa9.07□□□□□ -0.96
CHD3-201ENST00000330494 WNT1P04628 370 aa9.07□□□□□ -0.96
CHD3-201ENST00000330494 HOXC4P09017 264 aaPredicted RBP9.07□□□□□ -0.96
CHD3-201ENST00000330494 SLC25A6P12236 298 aa9.07□□□□□ -0.96
CHD3-201ENST00000330494 SUMO1P63165 101 aaKnown RBP9.07□□□□□ -0.96
CHD3-201ENST00000330494 OR52N4Q8NGI2 321 aa9.07□□□□□ -0.96
CHD3-201ENST00000330494 OR8D4Q8NGM9 314 aa9.07□□□□□ -0.96
CHD3-201ENST00000330494 EXTL1Q92935 676 aa9.07□□□□□ -0.96
CHD3-201ENST00000330494 TOLLIPQ9H0E2 274 aa9.07□□□□□ -0.96
CHD3-201ENST00000330494 SCPEP1Q9HB40 452 aa9.07□□□□□ -0.96
CHD3-201ENST00000330494 LIN7CQ9NUP9 197 aaKnown RBP9.07□□□□□ -0.96
CHD3-201ENST00000330494 ZNF354AO60765 605 aaPredicted RBP9.07□□□□□ -0.96
CHD3-201ENST00000330494 AKR1C3P42330 323 aa9.07□□□□□ -0.96
CHD3-201ENST00000330494 PMP22Q01453 160 aa9.07□□□□□ -0.96
CHD3-201ENST00000330494 SMIM21Q3B7S5 101 aa9.07□□□□□ -0.96
CHD3-201ENST00000330494 PELI1Q96FA3 418 aa9.07□□□□□ -0.96
CHD3-201ENST00000330494 RASL10BQ96S79 203 aa9.07□□□□□ -0.96
CHD3-201ENST00000330494 ZFP64Q9NPA5 681 aa9.07□□□□□ -0.96
CHD3-201ENST00000330494 SERTM2A0A1B0GWG4 89 aa9.07□□□□□ -0.96
CHD3-201ENST00000330494 CEACAM6P40199 344 aa9.07□□□□□ -0.96
CHD3-201ENST00000330494 TMEM267Q0VDI3 215 aaPredicted RBP9.07□□□□□ -0.96
CHD3-201ENST00000330494 RCL1Q9Y2P8 373 aaKnown RBP9.07□□□□□ -0.96
CHD3-201ENST00000330494 TET1Q8NFU7 2136 aa9.07□□□□□ -0.96
CHD3-201ENST00000330494 PPP5D1E7EU14 171 aa9.07□□□□□ -0.96
CHD3-201ENST00000330494 MASP2O00187 686 aa9.07□□□□□ -0.96
CHD3-201ENST00000330494 OR7C2O60412 319 aa9.07□□□□□ -0.96
CHD3-201ENST00000330494 ZFPL1O95159 310 aa9.07□□□□□ -0.96
CHD3-201ENST00000330494 KRASP01116 189 aa9.07□□□□□ -0.96
CHD3-201ENST00000330494 NTF3P20783 257 aa9.07□□□□□ -0.96
CHD3-201ENST00000330494 THBS4P35443 961 aa9.07□□□□□ -0.96
CHD3-201ENST00000330494 BTG1P62324 171 aa9.07□□□□□ -0.96
CHD3-201ENST00000330494 C17orf47Q8NEP4 570 aa9.07□□□□□ -0.96
CHD3-201ENST00000330494 H2AFB1P0C5Y9 115 aa9.06□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms