RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 STARD4Q96DR4 205 aa12.9□□□□□ -0.34
COL7A1-201ENST00000328333 HDGFL3Q9Y3E1 203 aa12.9□□□□□ -0.34
COL7A1-201ENST00000328333 COL22A1Q8NFW1 1626 aaPredicted RBP12.9□□□□□ -0.34
COL7A1-201ENST00000328333 NXPH3O95157 252 aa12.9□□□□□ -0.34
COL7A1-201ENST00000328333 CCL5P13501 91 aa12.9□□□□□ -0.34
COL7A1-201ENST00000328333 IL24Q13007 206 aa12.9□□□□□ -0.34
COL7A1-201ENST00000328333 PPT2Q9UMR5 302 aa12.9□□□□□ -0.34
COL7A1-201ENST00000328333 RPS4Y1P22090 263 aaKnown RBP12.9□□□□□ -0.34
COL7A1-201ENST00000328333 SRP14P37108 136 aaKnown RBP12.9□□□□□ -0.34
COL7A1-201ENST00000328333 EDDM3AQ14507 147 aa12.9□□□□□ -0.34
COL7A1-201ENST00000328333 REC114Q7Z4M0 266 aa12.9□□□□□ -0.34
COL7A1-201ENST00000328333 OR52N5Q8NH56 324 aa12.9□□□□□ -0.34
COL7A1-201ENST00000328333 RCL1Q9Y2P8 373 aaKnown RBP12.9□□□□□ -0.34
COL7A1-201ENST00000328333 H0YIG0 161 aa12.9□□□□□ -0.35
COL7A1-201ENST00000328333 PLPP2O43688 288 aa12.9□□□□□ -0.35
COL7A1-201ENST00000328333 SLC10A3P09131 477 aa12.9□□□□□ -0.35
COL7A1-201ENST00000328333 HOXA6P31267 233 aa12.9□□□□□ -0.35
COL7A1-201ENST00000328333 CCL14Q16627 93 aa12.9□□□□□ -0.35
COL7A1-201ENST00000328333 PBOV1Q9GZY1 135 aa12.9□□□□□ -0.35
COL7A1-201ENST00000328333 LEUTXA8MZ59 168 aa12.89□□□□□ -0.35
COL7A1-201ENST00000328333 HOXD9P28356 352 aaPredicted RBP12.89□□□□□ -0.35
COL7A1-201ENST00000328333 SLC16A11Q8NCK7 471 aa12.89□□□□□ -0.35
COL7A1-201ENST00000328333 MVB12AQ96EY5 273 aa12.89□□□□□ -0.35
COL7A1-201ENST00000328333 Q96M85 177 aa12.89□□□□□ -0.35
COL7A1-201ENST00000328333 TMEM147Q9BVK8 224 aa12.89□□□□□ -0.35
COL7A1-201ENST00000328333 MT-ND6P03923 174 aa12.89□□□□□ -0.35
COL7A1-201ENST00000328333 DUSP18Q8NEJ0 188 aa12.89□□□□□ -0.35
COL7A1-201ENST00000328333 BCL7CQ8WUZ0 217 aaPredicted RBP12.89□□□□□ -0.35
COL7A1-201ENST00000328333 APOBEC3DQ96AK3 386 aaPredicted RBP12.89□□□□□ -0.35
COL7A1-201ENST00000328333 TXNDC17Q9BRA2 123 aa12.89□□□□□ -0.35
COL7A1-201ENST00000328333 THYN1Q9P016 225 aa12.89□□□□□ -0.35
COL7A1-201ENST00000328333 ZFP30Q9Y2G7 519 aa12.89□□□□□ -0.35
COL7A1-201ENST00000328333 TMEM30CPA0ZSE6 113 aa12.89□□□□□ -0.35
COL7A1-201ENST00000328333 PLPP1O14494 284 aa12.89□□□□□ -0.35
COL7A1-201ENST00000328333 GPR37O15354 613 aa12.89□□□□□ -0.35
COL7A1-201ENST00000328333 AFMIDQ63HM1 303 aa12.89□□□□□ -0.35
COL7A1-201ENST00000328333 ZDHHC19Q8WVZ1 309 aaPredicted RBP12.89□□□□□ -0.35
COL7A1-201ENST00000328333 PIK3IP1Q96FE7 263 aa12.89□□□□□ -0.35
COL7A1-201ENST00000328333 CXorf51AA0A1B0GTR3 108 aa12.89□□□□□ -0.35
COL7A1-201ENST00000328333 TCRBV5S2A0A599 114 aa12.89□□□□□ -0.35
COL7A1-201ENST00000328333 CORTO00230 105 aa12.89□□□□□ -0.35
COL7A1-201ENST00000328333 FUT3P21217 361 aa12.89□□□□□ -0.35
COL7A1-201ENST00000328333 PAFAH1B2P68402 229 aa12.89□□□□□ -0.35
COL7A1-201ENST00000328333 PABPC1L2AQ5JQF8 200 aa12.89□□□□□ -0.35
COL7A1-201ENST00000328333 RTP2Q5QGT7 225 aa12.89□□□□□ -0.35
COL7A1-201ENST00000328333 A0A1W2PNV4 684 aa12.89□□□□□ -0.35
COL7A1-201ENST00000328333 INPP5JQ15735 1006 aaPredicted RBP12.89□□□□□ -0.35
COL7A1-201ENST00000328333 LTC4SQ16873 150 aa12.89□□□□□ -0.35
COL7A1-201ENST00000328333 AWAT1Q58HT5 328 aa12.89□□□□□ -0.35
COL7A1-201ENST00000328333 CDC42EP3Q9UKI2 254 aa12.89□□□□□ -0.35
COL7A1-201ENST00000328333 OR2J3O76001 311 aa12.89□□□□□ -0.35
COL7A1-201ENST00000328333 BCL3P20749 454 aa12.89□□□□□ -0.35
COL7A1-201ENST00000328333 FGF14Q92915 247 aa12.89□□□□□ -0.35
COL7A1-201ENST00000328333 PTPRDP23468 1912 aa12.89□□□□□ -0.35
COL7A1-201ENST00000328333 BCAT2O15382 392 aaPredicted RBP12.89□□□□□ -0.35
COL7A1-201ENST00000328333 THBS4P35443 961 aa12.89□□□□□ -0.35
COL7A1-201ENST00000328333 B2MP61769 119 aa12.89□□□□□ -0.35
COL7A1-201ENST00000328333 GNB1P62873 340 aa12.89□□□□□ -0.35
COL7A1-201ENST00000328333 RIGQ13278 110 aa12.89□□□□□ -0.35
COL7A1-201ENST00000328333 METRNLQ641Q3 311 aa12.89□□□□□ -0.35
COL7A1-201ENST00000328333 PRSS54Q6PEW0 395 aa12.89□□□□□ -0.35
COL7A1-201ENST00000328333 CTU1Q7Z7A3 348 aaKnown RBP12.89□□□□□ -0.35
COL7A1-201ENST00000328333 SCD5Q86SK9 330 aa12.88□□□□□ -0.35
COL7A1-201ENST00000328333 CLDN23Q96B33 292 aa12.88□□□□□ -0.35
COL7A1-201ENST00000328333 M0R082 166 aa12.88□□□□□ -0.35
COL7A1-201ENST00000328333 SIAH2O43255 324 aa12.88□□□□□ -0.35
COL7A1-201ENST00000328333 ACRP10323 421 aa12.88□□□□□ -0.35
COL7A1-201ENST00000328333 TMEM11P17152 192 aa12.88□□□□□ -0.35
COL7A1-201ENST00000328333 IRS1P35568 1242 aa12.88□□□□□ -0.35
COL7A1-201ENST00000328333 SLC38A11Q08AI6 406 aa12.88□□□□□ -0.35
COL7A1-201ENST00000328333 UBE2V2Q15819 145 aa12.88□□□□□ -0.35
COL7A1-201ENST00000328333 NSUN5P2Q63ZY6 315 aa12.88□□□□□ -0.35
COL7A1-201ENST00000328333 ZNF384Q8TF68 577 aa12.88□□□□□ -0.35
COL7A1-201ENST00000328333 OXGR1Q96P68 337 aa12.88□□□□□ -0.35
COL7A1-201ENST00000328333 WASHC3Q9Y3C0 194 aa12.88□□□□□ -0.35
COL7A1-201ENST00000328333 OR2T8A6NH00 312 aa12.88□□□□□ -0.35
COL7A1-201ENST00000328333 AUNIPQ9H7T9 357 aa12.88□□□□□ -0.35
COL7A1-201ENST00000328333 CALHM2Q9HA72 323 aa12.88□□□□□ -0.35
COL7A1-201ENST00000328333 PRSS21Q9Y6M0 314 aa12.88□□□□□ -0.35
COL7A1-201ENST00000328333 RIF1Q5UIP0 2472 aaKnown RBP12.88□□□□□ -0.35
COL7A1-201ENST00000328333 LINC00862A6NCI5 91 aa12.88□□□□□ -0.35
COL7A1-201ENST00000328333 GSTZ1O43708 216 aaPredicted RBP12.88□□□□□ -0.35
COL7A1-201ENST00000328333 TAPBPO15533 448 aa12.88□□□□□ -0.35
COL7A1-201ENST00000328333 KCNAB3O43448 404 aa12.88□□□□□ -0.35
COL7A1-201ENST00000328333 OR51E1Q8TCB6 317 aa12.88□□□□□ -0.35
COL7A1-201ENST00000328333 COA3Q9Y2R0 106 aaPredicted RBP12.88□□□□□ -0.35
COL7A1-201ENST00000328333 MRPS2Q9Y399 296 aaKnown RBP12.88□□□□□ -0.35
COL7A1-201ENST00000328333 SEZ6L2Q6UXD5 910 aa12.88□□□□□ -0.35
COL7A1-201ENST00000328333 TBX21Q9UL17 535 aa12.88□□□□□ -0.35
COL7A1-201ENST00000328333 ZNF98A6NK75 572 aa12.88□□□□□ -0.35
COL7A1-201ENST00000328333 CD300LDQ6UXZ3 194 aa12.88□□□□□ -0.35
COL7A1-201ENST00000328333 OR2D3Q8NGH3 330 aa12.88□□□□□ -0.35
COL7A1-201ENST00000328333 ACY3Q96HD9 319 aa12.88□□□□□ -0.35
COL7A1-201ENST00000328333 OR2A5Q96R48 311 aa12.88□□□□□ -0.35
COL7A1-201ENST00000328333 IGLV3-10A0A075B6K4 115 aa12.88□□□□□ -0.35
COL7A1-201ENST00000328333 GYPAP02724 150 aa12.88□□□□□ -0.35
COL7A1-201ENST00000328333 KHDC3LQ587J8 217 aa12.88□□□□□ -0.35
COL7A1-201ENST00000328333 MAGT1Q9H0U3 335 aa12.88□□□□□ -0.35
COL7A1-201ENST00000328333 AP5S1Q9NUS5 200 aa12.88□□□□□ -0.35
COL7A1-201ENST00000328333 SH2D7A6NKC9 451 aaPredicted RBP12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms