RNA–Protein interactions for RNA: ENST00000303395.8

SCN1A-201, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,533 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-201ENST00000303395 TBC1D28Q2M2D7 210 aa4.74□□□□□ -1.65
SCN1A-201ENST00000303395 FAM72AQ5TYM5 149 aa4.74□□□□□ -1.65
SCN1A-201ENST00000303395 LCN10Q6JVE6 187 aa4.74□□□□□ -1.65
SCN1A-201ENST00000303395 GDF6Q6KF10 455 aaPredicted RBP4.74□□□□□ -1.65
SCN1A-201ENST00000303395 FAM72DQ6L9T8 149 aa4.74□□□□□ -1.65
SCN1A-201ENST00000303395 FAM72BQ86X60 149 aa4.74□□□□□ -1.65
SCN1A-201ENST00000303395 MORN4Q8NDC4 146 aa4.74□□□□□ -1.65
SCN1A-201ENST00000303395 NUBPLQ8TB37 319 aa4.74□□□□□ -1.65
SCN1A-201ENST00000303395 NEIL2Q969S2 332 aa4.74□□□□□ -1.65
SCN1A-201ENST00000303395 EHFQ9NZC4 300 aa4.74□□□□□ -1.65
SCN1A-201ENST00000303395 NTMQ9P121 344 aa4.74□□□□□ -1.65
SCN1A-201ENST00000303395 GABRQQ9UN88 632 aa4.74□□□□□ -1.65
SCN1A-201ENST00000303395 H3BML4 177 aa4.74□□□□□ -1.65
SCN1A-201ENST00000303395 GPR31O00270 319 aa4.74□□□□□ -1.65
SCN1A-201ENST00000303395 EPHA2P29317 976 aa4.74□□□□□ -1.65
SCN1A-201ENST00000303395 CDKN2AP42771 156 aaKnown RBP4.74□□□□□ -1.65
SCN1A-201ENST00000303395 FOXA1P55317 472 aa4.74□□□□□ -1.65
SCN1A-201ENST00000303395 RHOBP62745 196 aa4.74□□□□□ -1.65
SCN1A-201ENST00000303395 NHLH1Q02575 133 aa4.74□□□□□ -1.65
SCN1A-201ENST00000303395 TESK1Q15569 626 aa4.74□□□□□ -1.65
SCN1A-201ENST00000303395 STAC2Q6ZMT1 411 aa4.74□□□□□ -1.65
SCN1A-201ENST00000303395 C9orf40Q8IXQ3 194 aa4.74□□□□□ -1.65
SCN1A-201ENST00000303395 CLECL1Q8IZS7 167 aa4.74□□□□□ -1.65
SCN1A-201ENST00000303395 CMTM8Q8IZV2 173 aa4.74□□□□□ -1.65
SCN1A-201ENST00000303395 CLDN19Q8N6F1 224 aa4.74□□□□□ -1.65
SCN1A-201ENST00000303395 DYNLRB2Q8TF09 96 aa4.74□□□□□ -1.65
SCN1A-201ENST00000303395 GTF3AQ92664 365 aaKnown RBP4.74□□□□□ -1.65
SCN1A-201ENST00000303395 POFUT1Q9H488 388 aa4.74□□□□□ -1.65
SCN1A-201ENST00000303395 FKBP11Q9NYL4 201 aa4.74□□□□□ -1.65
SCN1A-201ENST00000303395 FLVCR1Q9Y5Y0 555 aa4.74□□□□□ -1.65
SCN1A-201ENST00000303395 TOX3O15405 576 aaPredicted RBP4.74□□□□□ -1.65
SCN1A-201ENST00000303395 CD74P04233 296 aa4.74□□□□□ -1.65
SCN1A-201ENST00000303395 COX6CP09669 75 aa4.74□□□□□ -1.65
SCN1A-201ENST00000303395 BMP5P22003 454 aa4.74□□□□□ -1.65
SCN1A-201ENST00000303395 OR1E2P47887 323 aa4.74□□□□□ -1.65
SCN1A-201ENST00000303395 EDDM3BP56851 147 aa4.74□□□□□ -1.65
SCN1A-201ENST00000303395 C18orf63Q68DL7 685 aa4.74□□□□□ -1.65
SCN1A-201ENST00000303395 RPUSD3Q6P087 351 aaKnown RBP4.74□□□□□ -1.65
SCN1A-201ENST00000303395 TMEM184AQ6ZMB5 413 aa4.74□□□□□ -1.65
SCN1A-201ENST00000303395 DEFB119Q8N690 84 aa4.74□□□□□ -1.65
SCN1A-201ENST00000303395 RAB37Q96AX2 223 aa4.74□□□□□ -1.65
SCN1A-201ENST00000303395 KCNK15Q9H427 330 aa4.74□□□□□ -1.65
SCN1A-201ENST00000303395 OCIAD1Q9NX40 245 aa4.74□□□□□ -1.65
SCN1A-201ENST00000303395 DNMT3BQ9UBC3 853 aaKnown RBP4.74□□□□□ -1.65
SCN1A-201ENST00000303395 NAGKQ9UJ70 344 aa4.74□□□□□ -1.65
SCN1A-201ENST00000303395 LEFTY2O00292 366 aa4.73□□□□□ -1.65
SCN1A-201ENST00000303395 DEGS1O15121 323 aa4.73□□□□□ -1.65
SCN1A-201ENST00000303395 NKX2-2O95096 273 aa4.73□□□□□ -1.65
SCN1A-201ENST00000303395 LINC00614P0C842 121 aa4.73□□□□□ -1.65
SCN1A-201ENST00000303395 OR1D4P47884 311 aa4.73□□□□□ -1.65
SCN1A-201ENST00000303395 PFN3P60673 137 aa4.73□□□□□ -1.65
SCN1A-201ENST00000303395 TTC32Q5I0X7 151 aa4.73□□□□□ -1.65
SCN1A-201ENST00000303395 LDLRAD1Q5T700 205 aa4.73□□□□□ -1.65
SCN1A-201ENST00000303395 NKAIN2Q5VXU1 208 aa4.73□□□□□ -1.65
SCN1A-201ENST00000303395 LRRTM1Q86UE6 522 aa4.73□□□□□ -1.65
SCN1A-201ENST00000303395 PIANPQ8IYJ0 282 aa4.73□□□□□ -1.65
SCN1A-201ENST00000303395 BOD1L2Q8IYS8 172 aa4.73□□□□□ -1.65
SCN1A-201ENST00000303395 ZADH2Q8N4Q0 377 aa4.73□□□□□ -1.65
SCN1A-201ENST00000303395 OR52R1Q8NGF1 315 aa4.73□□□□□ -1.65
SCN1A-201ENST00000303395 FAM213BQ8TBF2 198 aa4.73□□□□□ -1.65
SCN1A-201ENST00000303395 LMF1Q96S06 567 aa4.73□□□□□ -1.65
SCN1A-201ENST00000303395 KCNE5Q9UJ90 142 aa4.73□□□□□ -1.65
SCN1A-201ENST00000303395 WSB1Q9Y6I7 421 aa4.73□□□□□ -1.65
SCN1A-201ENST00000303395 SLCO1B1Q9Y6L6 691 aa4.73□□□□□ -1.65
SCN1A-201ENST00000303395 PRAMEF26H0Y7S4 382 aa4.73□□□□□ -1.65
SCN1A-201ENST00000303395 M0QYG6 137 aa4.73□□□□□ -1.65
SCN1A-201ENST00000303395 SFTA3P0C7M3 94 aa4.73□□□□□ -1.65
SCN1A-201ENST00000303395 F3P13726 295 aa4.73□□□□□ -1.65
SCN1A-201ENST00000303395 GDF1P27539 372 aa4.73□□□□□ -1.65
SCN1A-201ENST00000303395 TNFRSF4P43489 277 aa4.73□□□□□ -1.65
SCN1A-201ENST00000303395 LIMS1P48059 325 aa4.73□□□□□ -1.65
SCN1A-201ENST00000303395 SNRPD2P62316 118 aaKnown RBP4.73□□□□□ -1.65
SCN1A-201ENST00000303395 SRSF4Q08170 494 aaKnown RBP4.73□□□□□ -1.65
SCN1A-201ENST00000303395 FUT7Q11130 342 aa4.73□□□□□ -1.65
SCN1A-201ENST00000303395 KLRB1Q12918 225 aa4.73□□□□□ -1.65
SCN1A-201ENST00000303395 ZNF542PQ5EBM4 170 aa4.73□□□□□ -1.65
SCN1A-201ENST00000303395 OR10A7Q8NGE5 316 aa4.73□□□□□ -1.65
SCN1A-201ENST00000303395 OR1L1Q8NH94 360 aa4.73□□□□□ -1.65
SCN1A-201ENST00000303395 ATOH1Q92858 354 aaPredicted RBP4.73□□□□□ -1.65
SCN1A-201ENST00000303395 IGSF8Q969P0 613 aa4.73□□□□□ -1.65
SCN1A-201ENST00000303395 CSF3RQ99062 836 aa4.73□□□□□ -1.65
SCN1A-201ENST00000303395 SLC45A2Q9UMX9 530 aa4.73□□□□□ -1.65
SCN1A-201ENST00000303395 KCNK6Q9Y257 313 aa4.73□□□□□ -1.65
SCN1A-201ENST00000303395 IER3IP1Q9Y5U9 82 aa4.73□□□□□ -1.65
SCN1A-201ENST00000303395 FAM181BA6NEQ2 426 aa4.73□□□□□ -1.65
SCN1A-201ENST00000303395 SLC22A20A6NK97 555 aa4.73□□□□□ -1.65
SCN1A-201ENST00000303395 MEIS3P2A8K0S8 358 aa4.73□□□□□ -1.65
SCN1A-201ENST00000303395 HMGN4O00479 90 aa4.73□□□□□ -1.65
SCN1A-201ENST00000303395 PPP6CO00743 305 aa4.73□□□□□ -1.65
SCN1A-201ENST00000303395 HSPB6O14558 160 aa4.73□□□□□ -1.65
SCN1A-201ENST00000303395 SEMA7AO75326 666 aa4.73□□□□□ -1.65
SCN1A-201ENST00000303395 STARD6P59095 220 aa4.73□□□□□ -1.65
SCN1A-201ENST00000303395 MRPS21P82921 87 aaKnown RBP4.73□□□□□ -1.65
SCN1A-201ENST00000303395 Q6ZVL8 140 aa4.73□□□□□ -1.65
SCN1A-201ENST00000303395 SCAMP5Q8TAC9 235 aa4.73□□□□□ -1.65
SCN1A-201ENST00000303395 PIGCQ92535 297 aa4.73□□□□□ -1.65
SCN1A-201ENST00000303395 SFRP2Q96HF1 295 aa4.73□□□□□ -1.65
SCN1A-201ENST00000303395 DERL3Q96Q80 235 aa4.73□□□□□ -1.65
SCN1A-201ENST00000303395 TMEM167BQ9NRX6 74 aa4.73□□□□□ -1.65
SCN1A-201ENST00000303395 CTSFQ9UBX1 484 aa4.73□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms