RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 MAP2K3P46734 347 aa11.97□□□□□ -0.49
CCDC88B-201ENST00000301897 CNN3Q15417 329 aaKnown RBP11.97□□□□□ -0.49
CCDC88B-201ENST00000301897 CEACAM21Q3KPI0 293 aa11.97□□□□□ -0.49
CCDC88B-201ENST00000301897 SPATS1Q496A3 300 aa11.97□□□□□ -0.49
CCDC88B-201ENST00000301897 VAX1Q5SQQ9 334 aa11.97□□□□□ -0.49
CCDC88B-201ENST00000301897 KRT74Q7RTS7 529 aa11.97□□□□□ -0.49
CCDC88B-201ENST00000301897 THAP5Q7Z6K1 395 aa11.97□□□□□ -0.49
CCDC88B-201ENST00000301897 ZNF561Q8N587 486 aa11.97□□□□□ -0.49
CCDC88B-201ENST00000301897 AQP11Q8NBQ7 271 aa11.97□□□□□ -0.49
CCDC88B-201ENST00000301897 PIFOQ8TCI5 191 aa11.97□□□□□ -0.49
CCDC88B-201ENST00000301897 RPS4Y2Q8TD47 263 aa11.97□□□□□ -0.49
CCDC88B-201ENST00000301897 DGCR6LQ9BY27 220 aa11.97□□□□□ -0.49
CCDC88B-201ENST00000301897 PRSS22Q9GZN4 317 aa11.97□□□□□ -0.49
CCDC88B-201ENST00000301897 OR51I2Q9H344 312 aa11.97□□□□□ -0.49
CCDC88B-201ENST00000301897 ABCB10Q9NRK6 738 aa11.97□□□□□ -0.49
CCDC88B-201ENST00000301897 SERTAD4Q9NUC0 356 aa11.97□□□□□ -0.49
CCDC88B-201ENST00000301897 USE1Q9NZ43 259 aa11.97□□□□□ -0.49
CCDC88B-201ENST00000301897 ACOD1A6NK06 481 aa11.96□□□□□ -0.49
CCDC88B-201ENST00000301897 OR5B21A6NL26 309 aa11.96□□□□□ -0.49
CCDC88B-201ENST00000301897 H3BUI4 141 aa11.96□□□□□ -0.49
CCDC88B-201ENST00000301897 MTRF1O75570 445 aaKnown RBP11.96□□□□□ -0.49
CCDC88B-201ENST00000301897 LYNP07948 512 aa11.96□□□□□ -0.49
CCDC88B-201ENST00000301897 CD28P10747 220 aa11.96□□□□□ -0.49
CCDC88B-201ENST00000301897 ATP6V1B1P15313 513 aa11.96□□□□□ -0.49
CCDC88B-201ENST00000301897 LYG1Q8N1E2 194 aa11.96□□□□□ -0.49
CCDC88B-201ENST00000301897 OR5A2Q8NGI9 324 aa11.96□□□□□ -0.49
CCDC88B-201ENST00000301897 OR4Q3Q8NH05 313 aa11.96□□□□□ -0.49
CCDC88B-201ENST00000301897 OTOSQ8NHW6 89 aa11.96□□□□□ -0.49
CCDC88B-201ENST00000301897 YY1AP1Q9H869 796 aa11.96□□□□□ -0.49
CCDC88B-201ENST00000301897 C19orf12Q9NSK7 152 aa11.96□□□□□ -0.49
CCDC88B-201ENST00000301897 ARMC1Q9NVT9 282 aa11.96□□□□□ -0.49
CCDC88B-201ENST00000301897 TCF19Q9Y242 345 aa11.96□□□□□ -0.49
CCDC88B-201ENST00000301897 TBL2Q9Y4P3 447 aaKnown RBP11.96□□□□□ -0.49
CCDC88B-201ENST00000301897 KMT2CQ8NEZ4 4911 aaKnown RBP11.95□□□□□ -0.5
CCDC88B-201ENST00000301897 A0A0U1RQV5 110 aa11.95□□□□□ -0.5
CCDC88B-201ENST00000301897 FAM90A8PA6NJQ4 464 aa11.95□□□□□ -0.5
CCDC88B-201ENST00000301897 ZNF732B4DXR9 585 aa11.95□□□□□ -0.5
CCDC88B-201ENST00000301897 RHBDL1O75783 438 aa11.95□□□□□ -0.5
CCDC88B-201ENST00000301897 SOX14O95416 240 aa11.95□□□□□ -0.5
CCDC88B-201ENST00000301897 CD33P20138 364 aa11.95□□□□□ -0.5
CCDC88B-201ENST00000301897 PSMA6P60900 246 aaKnown RBP11.95□□□□□ -0.5
CCDC88B-201ENST00000301897 ARSJQ5FYB0 599 aaPredicted RBP11.95□□□□□ -0.5
CCDC88B-201ENST00000301897 TMEM200BQ69YZ2 307 aa11.95□□□□□ -0.5
CCDC88B-201ENST00000301897 PGAM4Q8N0Y7 254 aa11.95□□□□□ -0.5
CCDC88B-201ENST00000301897 WFDC9Q8NEX5 89 aa11.95□□□□□ -0.5
CCDC88B-201ENST00000301897 TEX47Q8TBZ9 253 aa11.95□□□□□ -0.5
CCDC88B-201ENST00000301897 THEM6Q8WUY1 208 aa11.95□□□□□ -0.5
CCDC88B-201ENST00000301897 AQP3Q92482 292 aa11.95□□□□□ -0.5
CCDC88B-201ENST00000301897 OTULINQ96BN8 352 aa11.95□□□□□ -0.5
CCDC88B-201ENST00000301897 MALSU1Q96EH3 234 aa11.95□□□□□ -0.5
CCDC88B-201ENST00000301897 LYZL4Q96KX0 146 aa11.95□□□□□ -0.5
CCDC88B-201ENST00000301897 CDRT15Q96T59 188 aa11.95□□□□□ -0.5
CCDC88B-201ENST00000301897 AMELYQ99218 206 aa11.95□□□□□ -0.5
CCDC88B-201ENST00000301897 CITED2Q99967 270 aaPredicted RBP11.95□□□□□ -0.5
CCDC88B-201ENST00000301897 ELAC2Q9BQ52 826 aaKnown RBP11.95□□□□□ -0.5
CCDC88B-201ENST00000301897 FGF23Q9GZV9 251 aaPredicted RBP11.95□□□□□ -0.5
CCDC88B-201ENST00000301897 C1orf21Q9H246 121 aa11.95□□□□□ -0.5
CCDC88B-201ENST00000301897 MEGF11A6BM72 1044 aa11.94□□□□□ -0.5
CCDC88B-201ENST00000301897 RFPL4AA6NLU0 287 aa11.94□□□□□ -0.5
CCDC88B-201ENST00000301897 RFPL4AL1F8VTS6 287 aa11.94□□□□□ -0.5
CCDC88B-201ENST00000301897 RBP4P02753 201 aa11.94□□□□□ -0.5
CCDC88B-201ENST00000301897 COX7A1P24310 79 aa11.94□□□□□ -0.5
CCDC88B-201ENST00000301897 MAGEA2P43356 314 aa11.94□□□□□ -0.5
CCDC88B-201ENST00000301897 MICAQ29983 383 aa11.94□□□□□ -0.5
CCDC88B-201ENST00000301897 ZBTB37Q5TC79 503 aa11.94□□□□□ -0.5
CCDC88B-201ENST00000301897 LCN1P1Q5VSP4 162 aa11.94□□□□□ -0.5
CCDC88B-201ENST00000301897 FOXB2Q5VYV0 432 aa11.94□□□□□ -0.5
CCDC88B-201ENST00000301897 CD300LDQ6UXZ3 194 aa11.94□□□□□ -0.5
CCDC88B-201ENST00000301897 ACP7Q6ZNF0 438 aa11.94□□□□□ -0.5
CCDC88B-201ENST00000301897 C11orf42Q8N5U0 333 aa11.94□□□□□ -0.5
CCDC88B-201ENST00000301897 POC1AQ8NBT0 407 aa11.94□□□□□ -0.5
CCDC88B-201ENST00000301897 OR8B12Q8NGG6 310 aa11.94□□□□□ -0.5
CCDC88B-201ENST00000301897 OR13D1Q8NGV5 346 aa11.94□□□□□ -0.5
CCDC88B-201ENST00000301897 OR2T27Q8NH04 317 aa11.94□□□□□ -0.5
CCDC88B-201ENST00000301897 WIPF2Q8TF74 440 aaPredicted RBP11.94□□□□□ -0.5
CCDC88B-201ENST00000301897 WNT10AQ9GZT5 417 aa11.94□□□□□ -0.5
CCDC88B-201ENST00000301897 MED20Q9H944 212 aa11.94□□□□□ -0.5
CCDC88B-201ENST00000301897 NDE1Q9NXR1 346 aa11.94□□□□□ -0.5
CCDC88B-201ENST00000301897 A6NDX4 124 aa11.93□□□□□ -0.5
CCDC88B-201ENST00000301897 FAM183AA6NL82 134 aa11.93□□□□□ -0.5
CCDC88B-201ENST00000301897 ADARB2-AS1A8MUL3 147 aa11.93□□□□□ -0.5
CCDC88B-201ENST00000301897 PAX6P26367 422 aa11.93□□□□□ -0.5
CCDC88B-201ENST00000301897 PRDX2P32119 198 aa11.93□□□□□ -0.5
CCDC88B-201ENST00000301897 DYNLT3P51808 116 aa11.93□□□□□ -0.5
CCDC88B-201ENST00000301897 RIPPLY1Q0D2K3 151 aa11.93□□□□□ -0.5
CCDC88B-201ENST00000301897 GK3PQ14409 553 aa11.93□□□□□ -0.5
CCDC88B-201ENST00000301897 HABP2Q14520 560 aaPredicted RBP11.93□□□□□ -0.5
CCDC88B-201ENST00000301897 HAGHLQ6PII5 290 aaPredicted RBP11.93□□□□□ -0.5
CCDC88B-201ENST00000301897 OR51V1Q9H2C8 321 aa11.93□□□□□ -0.5
CCDC88B-201ENST00000301897 ZKSCAN7Q9P0L1 754 aaPredicted RBP11.93□□□□□ -0.5
CCDC88B-201ENST00000301897 POLDIP2Q9Y2S7 368 aa11.93□□□□□ -0.5
CCDC88B-201ENST00000301897 PRR23D1E9PI22 279 aaPredicted RBP11.92□□□□□ -0.5
CCDC88B-201ENST00000301897 GSC2O15499 205 aa11.92□□□□□ -0.5
CCDC88B-201ENST00000301897 PRODHO43272 600 aa11.92□□□□□ -0.5
CCDC88B-201ENST00000301897 ATP8B1O43520 1251 aa11.92□□□□□ -0.5
CCDC88B-201ENST00000301897 MPIG6BO95866 241 aa11.92□□□□□ -0.5
CCDC88B-201ENST00000301897 PRR23D2P0DMB1 279 aaPredicted RBP11.92□□□□□ -0.5
CCDC88B-201ENST00000301897 AZGP1P25311 298 aaKnown RBP11.92□□□□□ -0.5
CCDC88B-201ENST00000301897 VDAC2P45880 294 aaPredicted RBP11.92□□□□□ -0.5
CCDC88B-201ENST00000301897 SLC35A2P78381 396 aa11.92□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms