RNA–Protein interactions for RNA: ENST00000287008.7

PCDH1-201, Transcript of protocadherin 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene PCDH1, Length 4,793 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-201ENST00000287008 AUNIPQ9H7T9 357 aa16.47■□□□□ 0.23
PCDH1-201ENST00000287008 TAAR5O14804 337 aa16.47■□□□□ 0.23
PCDH1-201ENST00000287008 LIMS3P0CW19 117 aa16.47■□□□□ 0.23
PCDH1-201ENST00000287008 LIMS4P0CW20 117 aa16.47■□□□□ 0.23
PCDH1-201ENST00000287008 MPGP29372 298 aa16.47■□□□□ 0.23
PCDH1-201ENST00000287008 UBE2G2P60604 165 aa16.47■□□□□ 0.23
PCDH1-201ENST00000287008 LSM6P62312 80 aaKnown RBP16.47■□□□□ 0.23
PCDH1-201ENST00000287008 PDCD1Q15116 288 aa16.47■□□□□ 0.23
PCDH1-201ENST00000287008 CHCHD2P9Q5T1J5 151 aaPredicted RBP16.47■□□□□ 0.23
PCDH1-201ENST00000287008 DNPH1O43598 174 aa16.46■□□□□ 0.23
PCDH1-201ENST00000287008 PDGFBP01127 241 aaPredicted RBP16.46■□□□□ 0.23
PCDH1-201ENST00000287008 OR4E1P0C645 316 aa16.46■□□□□ 0.23
PCDH1-201ENST00000287008 IAPPP10997 89 aa16.46■□□□□ 0.23
PCDH1-201ENST00000287008 MLF1P58340 268 aa16.46■□□□□ 0.23
PCDH1-201ENST00000287008 SNRPNP63162 240 aaKnown RBP16.46■□□□□ 0.23
PCDH1-201ENST00000287008 FLI1Q01543 452 aaPredicted RBP16.46■□□□□ 0.23
PCDH1-201ENST00000287008 SLC25A45Q8N413 288 aa16.46■□□□□ 0.23
PCDH1-201ENST00000287008 OR5D13Q8NGL4 314 aa16.46■□□□□ 0.23
PCDH1-201ENST00000287008 PLEKHA2Q9HB19 425 aa16.46■□□□□ 0.23
PCDH1-201ENST00000287008 E5RGE8 158 aa16.46■□□□□ 0.23
PCDH1-201ENST00000287008 CDX4O14627 284 aaPredicted RBP16.46■□□□□ 0.23
PCDH1-201ENST00000287008 PLPP2O43688 288 aa16.46■□□□□ 0.23
PCDH1-201ENST00000287008 FGF9P31371 208 aaPredicted RBP16.46■□□□□ 0.23
PCDH1-201ENST00000287008 LYG1Q8N1E2 194 aa16.46■□□□□ 0.23
PCDH1-201ENST00000287008 MFSD4AQ8N468 514 aa16.46■□□□□ 0.23
PCDH1-201ENST00000287008 DNASE2BQ8WZ79 361 aa16.46■□□□□ 0.23
PCDH1-201ENST00000287008 KLK11Q9UBX7 282 aa16.46■□□□□ 0.23
PCDH1-201ENST00000287008 NSG2Q9Y328 171 aa16.46■□□□□ 0.23
PCDH1-201ENST00000287008 SPTBP11277 2137 aa16.46■□□□□ 0.23
PCDH1-201ENST00000287008 TUBAL3A6NHL2 446 aa16.46■□□□□ 0.23
PCDH1-201ENST00000287008 CCL21O00585 134 aa16.46■□□□□ 0.23
PCDH1-201ENST00000287008 PEBP1P30086 187 aaKnown RBP16.46■□□□□ 0.23
PCDH1-201ENST00000287008 OR10V1Q8NGI7 309 aa16.46■□□□□ 0.23
PCDH1-201ENST00000287008 OR4C16Q8NGL9 310 aa16.46■□□□□ 0.23
PCDH1-201ENST00000287008 POM121L2Q96KW2 1035 aa16.46■□□□□ 0.23
PCDH1-201ENST00000287008 GAL3ST2Q9H3Q3 398 aa16.46■□□□□ 0.23
PCDH1-201ENST00000287008 FLRT3Q9NZU0 649 aa16.46■□□□□ 0.23
PCDH1-201ENST00000287008 NBASA2RRP1 2371 aa16.46■□□□□ 0.23
PCDH1-201ENST00000287008 COL4A1P02462 1669 aa16.46■□□□□ 0.23
PCDH1-201ENST00000287008 NPIPB8E9PQR5 432 aa16.46■□□□□ 0.22
PCDH1-201ENST00000287008 OR2F2O95006 317 aa16.46■□□□□ 0.22
PCDH1-201ENST00000287008 OR2F1Q13607 317 aa16.46■□□□□ 0.22
PCDH1-201ENST00000287008 PILRBQ9UKJ0 227 aa16.46■□□□□ 0.22
PCDH1-201ENST00000287008 HRASP01112 189 aa16.45■□□□□ 0.22
PCDH1-201ENST00000287008 LIFP15018 202 aa16.45■□□□□ 0.22
PCDH1-201ENST00000287008 ZNF816Q0VGE8 651 aaPredicted RBP16.45■□□□□ 0.22
PCDH1-201ENST00000287008 PLA1AQ53H76 456 aa16.45■□□□□ 0.22
PCDH1-201ENST00000287008 KCNRGQ8N5I3 272 aa16.45■□□□□ 0.22
PCDH1-201ENST00000287008 ADGRL4Q9HBW9 690 aa16.45■□□□□ 0.22
PCDH1-201ENST00000287008 ZNF275Q9NSD4 429 aaPredicted RBP16.45■□□□□ 0.22
PCDH1-201ENST00000287008 COL11A2P13942 1736 aaPredicted RBP16.45■□□□□ 0.22
PCDH1-201ENST00000287008 TRAF3IP2O43734 574 aaPredicted RBP16.45■□□□□ 0.22
PCDH1-201ENST00000287008 TRAPPC2P0DI81 140 aa16.45■□□□□ 0.22
PCDH1-201ENST00000287008 TRAPPC2BP0DI82 140 aa16.45■□□□□ 0.22
PCDH1-201ENST00000287008 KCNJ3P48549 501 aa16.45■□□□□ 0.22
PCDH1-201ENST00000287008 NHLRC1Q6VVB1 395 aa16.45■□□□□ 0.22
PCDH1-201ENST00000287008 MAMSTRQ6ZN01 415 aa16.45■□□□□ 0.22
PCDH1-201ENST00000287008 OR4S1Q8NGB4 309 aa16.45■□□□□ 0.22
PCDH1-201ENST00000287008 NTMQ9P121 344 aa16.45■□□□□ 0.22
PCDH1-201ENST00000287008 OR7C2O60412 319 aa16.45■□□□□ 0.22
PCDH1-201ENST00000287008 MPZL1O95297 269 aa16.45■□□□□ 0.22
PCDH1-201ENST00000287008 KRASP01116 189 aa16.45■□□□□ 0.22
PCDH1-201ENST00000287008 MNX1P50219 401 aaPredicted RBP16.45■□□□□ 0.22
PCDH1-201ENST00000287008 ZAR1Q86SH2 424 aa16.45■□□□□ 0.22
PCDH1-201ENST00000287008 C9orf40Q8IXQ3 194 aa16.45■□□□□ 0.22
PCDH1-201ENST00000287008 PXT1Q8NFP0 134 aa16.45■□□□□ 0.22
PCDH1-201ENST00000287008 ABHD3Q8WU67 409 aa16.45■□□□□ 0.22
PCDH1-201ENST00000287008 PCNPQ8WW12 178 aaKnown RBP16.45■□□□□ 0.22
PCDH1-201ENST00000287008 CLDN23Q96B33 292 aa16.45■□□□□ 0.22
PCDH1-201ENST00000287008 MAGT1Q9H0U3 335 aa16.45■□□□□ 0.22
PCDH1-201ENST00000287008 CXXC4Q9H2H0 198 aa16.45■□□□□ 0.22
PCDH1-201ENST00000287008 SMCO4Q9NRQ5 59 aa16.45■□□□□ 0.22
PCDH1-201ENST00000287008 C16orf97H3BN30 126 aa16.45■□□□□ 0.22
PCDH1-201ENST00000287008 PDCD6O75340 191 aa16.45■□□□□ 0.22
PCDH1-201ENST00000287008 BPIFB3P59826 476 aa16.45■□□□□ 0.22
PCDH1-201ENST00000287008 ADIRFQ15847 76 aa16.45■□□□□ 0.22
PCDH1-201ENST00000287008 TRAT1Q6PIZ9 186 aa16.45■□□□□ 0.22
PCDH1-201ENST00000287008 OR2M3Q8NG83 312 aa16.45■□□□□ 0.22
PCDH1-201ENST00000287008 TRAV38-1A0A0B4J264 116 aa16.44■□□□□ 0.22
PCDH1-201ENST00000287008 OR5H14A6NHG9 310 aa16.44■□□□□ 0.22
PCDH1-201ENST00000287008 IL5P05113 134 aa16.44■□□□□ 0.22
PCDH1-201ENST00000287008 SELENOPP49908 381 aa16.44■□□□□ 0.22
PCDH1-201ENST00000287008 UBE2MP61081 183 aaKnown RBP16.44■□□□□ 0.22
PCDH1-201ENST00000287008 AARDQ4LEZ3 155 aa16.44■□□□□ 0.22
PCDH1-201ENST00000287008 ACOT7LQ6ZUV0 252 aa16.44■□□□□ 0.22
PCDH1-201ENST00000287008 ASB10Q8WXI3 467 aa16.44■□□□□ 0.22
PCDH1-201ENST00000287008 GREM1O60565 184 aa16.44■□□□□ 0.22
PCDH1-201ENST00000287008 WNT1P04628 370 aa16.44■□□□□ 0.22
PCDH1-201ENST00000287008 GABRB1P18505 474 aa16.44■□□□□ 0.22
PCDH1-201ENST00000287008 RPL12P30050 165 aaKnown RBP16.44■□□□□ 0.22
PCDH1-201ENST00000287008 CEACAM3P40198 252 aa16.44■□□□□ 0.22
PCDH1-201ENST00000287008 SAP25Q8TEE9 199 aa16.44■□□□□ 0.22
PCDH1-201ENST00000287008 MOB3AQ96BX8 217 aa16.44■□□□□ 0.22
PCDH1-201ENST00000287008 C2orf50Q96LR7 162 aa16.44■□□□□ 0.22
PCDH1-201ENST00000287008 MS4A5Q9H3V2 200 aa16.44■□□□□ 0.22
PCDH1-201ENST00000287008 SLC17A5Q9NRA2 495 aa16.44■□□□□ 0.22
PCDH1-201ENST00000287008 MEX3AA1L020 520 aaKnown RBP16.44■□□□□ 0.22
PCDH1-201ENST00000287008 CLEC18AA5D8T8 446 aa16.44■□□□□ 0.22
PCDH1-201ENST00000287008 KRBOX1C9JBD0 128 aa16.44■□□□□ 0.22
PCDH1-201ENST00000287008 SMLR1H3BR10 107 aa16.44■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms