RNA–Protein interactions for RNA: ENST00000263398.10

CD44-201, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 4,589 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-201ENST00000263398 TRAF3IP2O43734 574 aaPredicted RBP9.6□□□□□ -0.87
CD44-201ENST00000263398 CNIH1O95406 144 aa9.6□□□□□ -0.87
CD44-201ENST00000263398 MPC2O95563 127 aa9.6□□□□□ -0.87
CD44-201ENST00000263398 PGA3P0DJD8 388 aa9.6□□□□□ -0.87
CD44-201ENST00000263398 HOXD11P31277 338 aaPredicted RBP9.6□□□□□ -0.87
CD44-201ENST00000263398 ISXQ2M1V0 245 aa9.6□□□□□ -0.87
CD44-201ENST00000263398 GALMQ96C23 342 aa9.6□□□□□ -0.87
CD44-201ENST00000263398 GNRHR2Q96P88 292 aa9.6□□□□□ -0.87
CD44-201ENST00000263398 MIXL1Q9H2W2 232 aa9.6□□□□□ -0.87
CD44-201ENST00000263398 C9orf170A2RU37 121 aa9.6□□□□□ -0.87
CD44-201ENST00000263398 PRRG2O14669 202 aa9.6□□□□□ -0.87
CD44-201ENST00000263398 RTL8BQ17RB0 113 aa9.6□□□□□ -0.87
CD44-201ENST00000263398 HLA-BQ31612 363 aa9.6□□□□□ -0.87
CD44-201ENST00000263398 WIPI1Q5MNZ9 446 aaPredicted RBP9.6□□□□□ -0.87
CD44-201ENST00000263398 C1orf53Q5VUE5 145 aa9.6□□□□□ -0.87
CD44-201ENST00000263398 FAM58AQ8N1B3 248 aa9.6□□□□□ -0.87
CD44-201ENST00000263398 KDF1Q8NAX2 398 aaPredicted RBP9.6□□□□□ -0.87
CD44-201ENST00000263398 NTNG2Q96CW9 530 aa9.6□□□□□ -0.87
CD44-201ENST00000263398 VSTM2LQ96N03 204 aa9.6□□□□□ -0.87
CD44-201ENST00000263398 TRIB1Q96RU8 372 aa9.6□□□□□ -0.87
CD44-201ENST00000263398 COMMD5Q9GZQ3 224 aa9.6□□□□□ -0.87
CD44-201ENST00000263398 FLRT3Q9NZU0 649 aa9.6□□□□□ -0.87
CD44-201ENST00000263398 ATAD5Q96QE3 1844 aa9.6□□□□□ -0.87
CD44-201ENST00000263398 COL9A1P20849 921 aa9.6□□□□□ -0.87
CD44-201ENST00000263398 KCNJ3P48549 501 aa9.6□□□□□ -0.87
CD44-201ENST00000263398 HES1Q14469 280 aa9.6□□□□□ -0.87
CD44-201ENST00000263398 IL11RAQ14626 422 aa9.6□□□□□ -0.87
CD44-201ENST00000263398 GUK1Q16774 197 aa9.6□□□□□ -0.87
CD44-201ENST00000263398 SMIM21Q3B7S5 101 aa9.6□□□□□ -0.87
CD44-201ENST00000263398 NCR3LG1Q68D85 454 aa9.6□□□□□ -0.87
CD44-201ENST00000263398 OR13D1Q8NGV5 346 aa9.6□□□□□ -0.87
CD44-201ENST00000263398 MCHR2Q969V1 340 aa9.6□□□□□ -0.87
CD44-201ENST00000263398 TVP23CQ96ET8 276 aa9.6□□□□□ -0.87
CD44-201ENST00000263398 PIK3IP1Q96FE7 263 aa9.6□□□□□ -0.87
CD44-201ENST00000263398 MASP2O00187 686 aa9.6□□□□□ -0.87
CD44-201ENST00000263398 METTL15P1P0C7V9 234 aa9.6□□□□□ -0.87
CD44-201ENST00000263398 SULT1A3P0DMM9 295 aa9.6□□□□□ -0.87
CD44-201ENST00000263398 SULT1A4P0DMN0 295 aa9.6□□□□□ -0.87
CD44-201ENST00000263398 TRA2AQ13595 282 aaKnown RBP eCLIP9.6□□□□□ -0.87
CD44-201ENST00000263398 FXNQ16595 210 aa9.6□□□□□ -0.87
CD44-201ENST00000263398 TMEM92Q6UXU6 159 aa9.6□□□□□ -0.87
CD44-201ENST00000263398 ERGIC1Q969X5 290 aa9.6□□□□□ -0.87
CD44-201ENST00000263398 AKR1E2Q96JD6 320 aa9.6□□□□□ -0.87
CD44-201ENST00000263398 MTCH1Q9NZJ7 389 aa9.6□□□□□ -0.87
CD44-201ENST00000263398 ADGRG3Q86Y34 549 aa9.59□□□□□ -0.87
CD44-201ENST00000263398 Q8IYB0 196 aa9.59□□□□□ -0.87
CD44-201ENST00000263398 NPEPL1Q8NDH3 523 aa9.59□□□□□ -0.87
CD44-201ENST00000263398 TAAR6Q96RI8 345 aa9.59□□□□□ -0.87
CD44-201ENST00000263398 MMP26Q9NRE1 261 aa9.59□□□□□ -0.87
CD44-201ENST00000263398 AQP7O14520 342 aa9.59□□□□□ -0.87
CD44-201ENST00000263398 PLA2G10O15496 165 aa9.59□□□□□ -0.87
CD44-201ENST00000263398 ERHP84090 104 aaKnown RBP9.59□□□□□ -0.87
CD44-201ENST00000263398 ZNF574Q6ZN55 896 aaPredicted RBP9.59□□□□□ -0.87
CD44-201ENST00000263398 TSEN54Q7Z6J9 526 aaKnown RBP9.59□□□□□ -0.87
CD44-201ENST00000263398 CXorf58Q96LI9 332 aa9.59□□□□□ -0.87
CD44-201ENST00000263398 C12orf57Q99622 126 aa9.59□□□□□ -0.87
CD44-201ENST00000263398 FAM173AQ9BQD7 235 aa9.59□□□□□ -0.87
CD44-201ENST00000263398 TPPP3Q9BW30 176 aa9.59□□□□□ -0.87
CD44-201ENST00000263398 CNTD2Q9H8S5 307 aa9.59□□□□□ -0.87
CD44-201ENST00000263398 OR7C2O60412 319 aa9.59□□□□□ -0.87
CD44-201ENST00000263398 POU2F2P09086 479 aa9.59□□□□□ -0.87
CD44-201ENST00000263398 GPM6AP51674 278 aa9.59□□□□□ -0.87
CD44-201ENST00000263398 SLC37A1P57057 533 aa9.59□□□□□ -0.87
CD44-201ENST00000263398 PPP1CAP62136 330 aa9.59□□□□□ -0.87
CD44-201ENST00000263398 PMP22Q01453 160 aa9.59□□□□□ -0.87
CD44-201ENST00000263398 RAB32Q13637 225 aa9.59□□□□□ -0.87
CD44-201ENST00000263398 FAHD2BQ6P2I3 314 aaPredicted RBP9.59□□□□□ -0.87
CD44-201ENST00000263398 NHLRC1Q6VVB1 395 aa9.59□□□□□ -0.87
CD44-201ENST00000263398 ATG4DQ86TL0 474 aaPredicted RBP9.59□□□□□ -0.87
CD44-201ENST00000263398 FAHD2AQ96GK7 314 aa9.59□□□□□ -0.87
CD44-201ENST00000263398 RASL12Q9NYN1 266 aa9.59□□□□□ -0.87
CD44-201ENST00000263398 ICAM5Q9UMF0 924 aa9.59□□□□□ -0.87
CD44-201ENST00000263398 CSF2RBP32927 897 aa9.58□□□□□ -0.88
CD44-201ENST00000263398 TLE1Q04724 770 aa9.58□□□□□ -0.88
CD44-201ENST00000263398 MIDNQ504T8 468 aa9.58□□□□□ -0.88
CD44-201ENST00000263398 JMJD6Q6NYC1 403 aaPredicted RBP9.58□□□□□ -0.88
CD44-201ENST00000263398 PRSS54Q6PEW0 395 aa9.58□□□□□ -0.88
CD44-201ENST00000263398 DBX2Q6ZNG2 339 aa9.58□□□□□ -0.88
CD44-201ENST00000263398 ANKRD37Q7Z713 158 aa9.58□□□□□ -0.88
CD44-201ENST00000263398 NECAP1Q8NC96 275 aa9.58□□□□□ -0.88
CD44-201ENST00000263398 NRTNQ99748 197 aa9.58□□□□□ -0.88
CD44-201ENST00000263398 MRPS18AQ9NVS2 196 aaKnown RBP9.58□□□□□ -0.88
CD44-201ENST00000263398 MTCH2Q9Y6C9 303 aa9.58□□□□□ -0.88
CD44-201ENST00000263398 A0A1W2PPV9 198 aa9.58□□□□□ -0.88
CD44-201ENST00000263398 RGS13O14921 159 aa9.58□□□□□ -0.88
CD44-201ENST00000263398 PDCD6O75340 191 aa9.58□□□□□ -0.88
CD44-201ENST00000263398 ZNF32P17041 273 aa9.58□□□□□ -0.88
CD44-201ENST00000263398 ZBTB25P24278 435 aa9.58□□□□□ -0.88
CD44-201ENST00000263398 CD226Q15762 336 aa9.58□□□□□ -0.88
CD44-201ENST00000263398 ZNF770Q6IQ21 691 aaPredicted RBP9.58□□□□□ -0.88
CD44-201ENST00000263398 MOB1BQ7L9L4 216 aa9.58□□□□□ -0.88
CD44-201ENST00000263398 ADGRG7Q96K78 797 aa9.58□□□□□ -0.88
CD44-201ENST00000263398 ZFC3H1O60293 1989 aaKnown RBP9.58□□□□□ -0.88
CD44-201ENST00000263398 A0A1W2PPQ1 181 aa9.58□□□□□ -0.88
CD44-201ENST00000263398 AQP7P3A6NL99 342 aa9.58□□□□□ -0.88
CD44-201ENST00000263398 OR4C45A6NMZ5 311 aa9.58□□□□□ -0.88
CD44-201ENST00000263398 TNFSF15O95150 251 aa9.58□□□□□ -0.88
CD44-201ENST00000263398 SFTA3P0C7M3 94 aa9.58□□□□□ -0.88
CD44-201ENST00000263398 CT45A10P0DMU9 189 aa9.58□□□□□ -0.88
CD44-201ENST00000263398 SLC25A4P12235 298 aa9.58□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms