RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 OCSTAMPQ9BR26 566 aa10.12□□□□□ -0.79
VPS4A-201ENST00000254950 SPRY4Q9C004 299 aa10.12□□□□□ -0.79
VPS4A-201ENST00000254950 KLK11Q9UBX7 282 aa10.12□□□□□ -0.79
VPS4A-201ENST00000254950 ATPIF1Q9UII2 106 aa10.12□□□□□ -0.79
VPS4A-201ENST00000254950 STARD10Q9Y365 291 aa10.12□□□□□ -0.79
VPS4A-201ENST00000254950 COL6A6A6NMZ7 2263 aa10.12□□□□□ -0.79
VPS4A-201ENST00000254950 J3QRE1 110 aa10.11□□□□□ -0.79
VPS4A-201ENST00000254950 L7N2F9 121 aa10.11□□□□□ -0.79
VPS4A-201ENST00000254950 HS3ST1O14792 307 aa10.11□□□□□ -0.79
VPS4A-201ENST00000254950 PIN1P1O15428 100 aa10.11□□□□□ -0.79
VPS4A-201ENST00000254950 GMDSO60547 372 aa10.11□□□□□ -0.79
VPS4A-201ENST00000254950 PMP2P02689 132 aa10.11□□□□□ -0.79
VPS4A-201ENST00000254950 VAMP2P63027 116 aa10.11□□□□□ -0.79
VPS4A-201ENST00000254950 ACSF3Q4G176 576 aaPredicted RBP10.11□□□□□ -0.79
VPS4A-201ENST00000254950 CXorf67Q86X51 503 aaPredicted RBP10.11□□□□□ -0.79
VPS4A-201ENST00000254950 Q8IYB0 196 aa10.11□□□□□ -0.79
VPS4A-201ENST00000254950 SFXN3Q9BWM7 321 aa10.11□□□□□ -0.79
VPS4A-201ENST00000254950 RNF122Q9H9V4 155 aa10.11□□□□□ -0.79
VPS4A-201ENST00000254950 PROK2Q9HC23 129 aa10.11□□□□□ -0.79
VPS4A-201ENST00000254950 SPRR3Q9UBC9 169 aa10.11□□□□□ -0.79
VPS4A-201ENST00000254950 SCGB1D2O95969 90 aa10.11□□□□□ -0.79
VPS4A-201ENST00000254950 ADRA2AP08913 450 aa10.11□□□□□ -0.79
VPS4A-201ENST00000254950 TBPP20226 339 aa10.11□□□□□ -0.79
VPS4A-201ENST00000254950 PVALBP20472 110 aaPredicted RBP10.11□□□□□ -0.79
VPS4A-201ENST00000254950 DLX5P56178 289 aa10.11□□□□□ -0.79
VPS4A-201ENST00000254950 KLF3P57682 345 aaPredicted RBP10.11□□□□□ -0.79
VPS4A-201ENST00000254950 GSG1LQ6UXU4 331 aa10.11□□□□□ -0.79
VPS4A-201ENST00000254950 SSX8Q7RTT4 187 aa10.11□□□□□ -0.79
VPS4A-201ENST00000254950 C12orf45Q8N5I9 185 aaPredicted RBP10.11□□□□□ -0.79
VPS4A-201ENST00000254950 ZIC4Q8N9L1 334 aa10.11□□□□□ -0.79
VPS4A-201ENST00000254950 SCMH1Q96GD3 660 aa10.11□□□□□ -0.79
VPS4A-201ENST00000254950 MS4A3Q96HJ5 214 aa10.11□□□□□ -0.79
VPS4A-201ENST00000254950 ABHD1Q96SE0 405 aa10.11□□□□□ -0.79
VPS4A-201ENST00000254950 VRK1Q99986 396 aaPredicted RBP10.11□□□□□ -0.79
VPS4A-201ENST00000254950 NICN1Q9BSH3 213 aa10.11□□□□□ -0.79
VPS4A-201ENST00000254950 RANBP3Q9H6Z4 567 aaPredicted RBP10.11□□□□□ -0.79
VPS4A-201ENST00000254950 KCNJ16Q9NPI9 418 aa10.11□□□□□ -0.79
VPS4A-201ENST00000254950 OSGIN2Q9Y236 505 aa10.11□□□□□ -0.79
VPS4A-201ENST00000254950 HSPB11Q9Y547 144 aa10.11□□□□□ -0.79
VPS4A-201ENST00000254950 IGKV3D-15A0A087WSY6 115 aa10.11□□□□□ -0.79
VPS4A-201ENST00000254950 H7C417 338 aa10.11□□□□□ -0.79
VPS4A-201ENST00000254950 FUT3P21217 361 aa10.11□□□□□ -0.79
VPS4A-201ENST00000254950 BTG1P62324 171 aa10.11□□□□□ -0.79
VPS4A-201ENST00000254950 FHL1Q13642 323 aa10.11□□□□□ -0.79
VPS4A-201ENST00000254950 SLAMF9Q96A28 289 aa10.11□□□□□ -0.79
VPS4A-201ENST00000254950 ZNF837Q96EG3 531 aaPredicted RBP10.11□□□□□ -0.79
VPS4A-201ENST00000254950 HRASLSQ9HDD0 168 aa10.11□□□□□ -0.79
VPS4A-201ENST00000254950 ALG5Q9Y673 324 aa10.11□□□□□ -0.79
VPS4A-201ENST00000254950 A0A1W2PNU3 283 aaPredicted RBP10.1□□□□□ -0.79
VPS4A-201ENST00000254950 LRRC37A5PQ49AS3 106 aa10.1□□□□□ -0.79
VPS4A-201ENST00000254950 PHYHD1Q5SRE7 291 aa10.1□□□□□ -0.79
VPS4A-201ENST00000254950 IGF2-ASQ6U949 168 aa10.1□□□□□ -0.79
VPS4A-201ENST00000254950 NAA40Q86UY6 237 aa10.1□□□□□ -0.79
VPS4A-201ENST00000254950 OR2Z1Q8NG97 314 aa10.1□□□□□ -0.79
VPS4A-201ENST00000254950 SLC25A40Q8TBP6 338 aa10.1□□□□□ -0.79
VPS4A-201ENST00000254950 MRPS24Q96EL2 167 aaKnown RBP10.1□□□□□ -0.79
VPS4A-201ENST00000254950 FZR1Q9UM11 496 aa10.1□□□□□ -0.79
VPS4A-201ENST00000254950 PCDHB10Q9UN67 800 aa10.1□□□□□ -0.79
VPS4A-201ENST00000254950 CSAG2Q9Y5P2 127 aa10.1□□□□□ -0.79
VPS4A-201ENST00000254950 SC5DO75845 299 aa10.1□□□□□ -0.79
VPS4A-201ENST00000254950 CBR1P16152 277 aa10.1□□□□□ -0.79
VPS4A-201ENST00000254950 AP2S1P53680 142 aaPredicted RBP10.1□□□□□ -0.79
VPS4A-201ENST00000254950 GUCA2AQ02747 115 aa10.1□□□□□ -0.79
VPS4A-201ENST00000254950 ZNF92Q03936 586 aa10.1□□□□□ -0.79
VPS4A-201ENST00000254950 CDH26Q8IXH8 852 aa10.1□□□□□ -0.79
VPS4A-201ENST00000254950 OR8H1Q8NGG4 311 aa10.1□□□□□ -0.79
VPS4A-201ENST00000254950 OR2T35Q8NGX2 323 aa10.1□□□□□ -0.79
VPS4A-201ENST00000254950 PIGMQ9H3S5 423 aa10.1□□□□□ -0.79
VPS4A-201ENST00000254950 NECAP2Q9NVZ3 263 aa10.1□□□□□ -0.79
VPS4A-201ENST00000254950 NKX6-3A6NJ46 265 aa10.1□□□□□ -0.79
VPS4A-201ENST00000254950 MSTNO14793 375 aa10.1□□□□□ -0.79
VPS4A-201ENST00000254950 CDC14BO60729 498 aa10.1□□□□□ -0.79
VPS4A-201ENST00000254950 TOXO94900 526 aa10.1□□□□□ -0.79
VPS4A-201ENST00000254950 HLA-AP01891 365 aaKnown RBP10.1□□□□□ -0.79
VPS4A-201ENST00000254950 CD3DP04234 171 aa10.1□□□□□ -0.79
VPS4A-201ENST00000254950 PTHLHP12272 177 aa10.1□□□□□ -0.79
VPS4A-201ENST00000254950 HIST1H1DP16402 221 aaKnown RBP10.1□□□□□ -0.79
VPS4A-201ENST00000254950 ATXN7L3Q14CW9 347 aaPredicted RBP10.1□□□□□ -0.79
VPS4A-201ENST00000254950 C1orf87Q8N0U7 546 aa10.1□□□□□ -0.79
VPS4A-201ENST00000254950 OR14K1Q8NGZ2 314 aa10.1□□□□□ -0.79
VPS4A-201ENST00000254950 FAM57AQ8TBR7 257 aa10.1□□□□□ -0.79
VPS4A-201ENST00000254950 ZNF524Q96C55 264 aa10.1□□□□□ -0.79
VPS4A-201ENST00000254950 C20orf85Q9H1P6 137 aa10.1□□□□□ -0.79
VPS4A-201ENST00000254950 ESRP2Q9H6T0 727 aaKnown RBP10.1□□□□□ -0.79
VPS4A-201ENST00000254950 ZDHHC11Q9H8X9 412 aa10.1□□□□□ -0.79
VPS4A-201ENST00000254950 TBC1D24Q9ULP9 559 aa10.1□□□□□ -0.79
VPS4A-201ENST00000254950 CHD9Q3L8U1 2897 aa10.1□□□□□ -0.79
VPS4A-201ENST00000254950 SPRY3O43610 288 aa10.09□□□□□ -0.79
VPS4A-201ENST00000254950 ATP6V1G1O75348 118 aa10.09□□□□□ -0.79
VPS4A-201ENST00000254950 PET100P0DJ07 73 aa10.09□□□□□ -0.79
VPS4A-201ENST00000254950 SMIM21Q3B7S5 101 aa10.09□□□□□ -0.79
VPS4A-201ENST00000254950 NSUN5P2Q63ZY6 315 aa10.09□□□□□ -0.79
VPS4A-201ENST00000254950 OR4D6Q8NGJ1 314 aa10.09□□□□□ -0.79
VPS4A-201ENST00000254950 PRDM14Q9GZV8 571 aa10.09□□□□□ -0.79
VPS4A-201ENST00000254950 RIMS4Q9H426 269 aaPredicted RBP10.09□□□□□ -0.79
VPS4A-201ENST00000254950 SH2D2AQ9NP31 389 aa10.09□□□□□ -0.79
VPS4A-201ENST00000254950 MTFP1Q9UDX5 166 aa10.09□□□□□ -0.79
VPS4A-201ENST00000254950 SIRPB1O00241 398 aa10.09□□□□□ -0.79
VPS4A-201ENST00000254950 TPPPO94811 219 aa10.09□□□□□ -0.79
VPS4A-201ENST00000254950 EDDM3AQ14507 147 aa10.09□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 66.6 ms