RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 ZMAT4Q9H898 229 aa3.19□□□□□ -1.9
SCN1A-221ENST00000641996 TXNRD2Q9NNW7 524 aa3.19□□□□□ -1.9
SCN1A-221ENST00000641996 TMEM9BQ9NQ34 198 aa3.19□□□□□ -1.9
SCN1A-221ENST00000641996 IL36GQ9NZH8 169 aa3.19□□□□□ -1.9
SCN1A-221ENST00000641996 C9orf170A2RU37 121 aa3.19□□□□□ -1.9
SCN1A-221ENST00000641996 SIGLEC16A6NMB1 481 aa3.19□□□□□ -1.9
SCN1A-221ENST00000641996 NDUFC2O95298 119 aa3.19□□□□□ -1.9
SCN1A-221ENST00000641996 EML2O95834 649 aa3.19□□□□□ -1.9
SCN1A-221ENST00000641996 MT-CO3P00414 261 aa3.19□□□□□ -1.9
SCN1A-221ENST00000641996 EIF4EP06730 217 aaKnown RBP3.19□□□□□ -1.9
SCN1A-221ENST00000641996 GFI1BQ5VTD9 330 aa3.19□□□□□ -1.9
SCN1A-221ENST00000641996 CNIH2Q6PI25 160 aa3.19□□□□□ -1.9
SCN1A-221ENST00000641996 OR51A2Q8NGJ7 313 aa3.19□□□□□ -1.9
SCN1A-221ENST00000641996 EID2BQ96D98 161 aa3.19□□□□□ -1.9
SCN1A-221ENST00000641996 MSLNLQ96KJ4 702 aa3.19□□□□□ -1.9
SCN1A-221ENST00000641996 MIEN1Q9BRT3 115 aa3.19□□□□□ -1.9
SCN1A-221ENST00000641996 SH2D2AQ9NP31 389 aa3.19□□□□□ -1.9
SCN1A-221ENST00000641996 KIAA1456Q9P272 454 aa3.19□□□□□ -1.9
SCN1A-221ENST00000641996 EPG5Q9HCE0 2579 aa3.19□□□□□ -1.9
SCN1A-221ENST00000641996 GAGE12BA1L429 117 aa3.19□□□□□ -1.9
SCN1A-221ENST00000641996 GRIFINA4D1Z8 144 aa3.19□□□□□ -1.9
SCN1A-221ENST00000641996 SOWAHBA6NEL2 793 aa3.19□□□□□ -1.9
SCN1A-221ENST00000641996 FAM90A27PA6NNH2 459 aa3.19□□□□□ -1.9
SCN1A-221ENST00000641996 MUC1P15941 1255 aaPredicted RBP3.19□□□□□ -1.9
SCN1A-221ENST00000641996 APOBEC3AP31941 199 aaPredicted RBP3.19□□□□□ -1.9
SCN1A-221ENST00000641996 GPM6AP51674 278 aa3.19□□□□□ -1.9
SCN1A-221ENST00000641996 ZP1P60852 638 aa3.19□□□□□ -1.9
SCN1A-221ENST00000641996 TBPL1P62380 186 aa3.19□□□□□ -1.9
SCN1A-221ENST00000641996 C6orf136Q5SQH8 315 aa3.19□□□□□ -1.9
SCN1A-221ENST00000641996 ASTLQ6HA08 431 aaPredicted RBP3.19□□□□□ -1.9
SCN1A-221ENST00000641996 GLIPR1L1Q6UWM5 242 aa3.19□□□□□ -1.9
SCN1A-221ENST00000641996 IGSF8Q969P0 613 aa3.19□□□□□ -1.9
SCN1A-221ENST00000641996 FLT4P35916 1363 aa3.19□□□□□ -1.9
SCN1A-221ENST00000641996 LOC100289279A0A1B0GTE1 492 aa3.18□□□□□ -1.9
SCN1A-221ENST00000641996 PRSS51A0A1B0GVH4 220 aa3.18□□□□□ -1.9
SCN1A-221ENST00000641996 A8MWP6 167 aa3.18□□□□□ -1.9
SCN1A-221ENST00000641996 MKRN2OSH3BPM6 223 aa3.18□□□□□ -1.9
SCN1A-221ENST00000641996 H3BTX0 84 aa3.18□□□□□ -1.9
SCN1A-221ENST00000641996 LYRM1O43325 122 aa3.18□□□□□ -1.9
SCN1A-221ENST00000641996 HOXC4P09017 264 aaPredicted RBP3.18□□□□□ -1.9
SCN1A-221ENST00000641996 CD22P20273 847 aa3.18□□□□□ -1.9
SCN1A-221ENST00000641996 PSMB5P28074 263 aa3.18□□□□□ -1.9
SCN1A-221ENST00000641996 TIA1P31483 386 aaKnown RBP eCLIP3.18□□□□□ -1.9
SCN1A-221ENST00000641996 MFGE8Q08431 387 aaPredicted RBP3.18□□□□□ -1.9
SCN1A-221ENST00000641996 SLCO4C1Q6ZQN7 724 aa3.18□□□□□ -1.9
SCN1A-221ENST00000641996 SIAH3Q8IW03 269 aa3.18□□□□□ -1.9
SCN1A-221ENST00000641996 OR4S1Q8NGB4 309 aa3.18□□□□□ -1.9
SCN1A-221ENST00000641996 OR52L1Q8NGH7 329 aa3.18□□□□□ -1.9
SCN1A-221ENST00000641996 GPR27Q9NS67 375 aa3.18□□□□□ -1.9
SCN1A-221ENST00000641996 RXFP3Q9NSD7 469 aa3.18□□□□□ -1.9
SCN1A-221ENST00000641996 NAT8Q9UHE5 227 aa3.18□□□□□ -1.9
SCN1A-221ENST00000641996 BLMP54132 1417 aaPredicted RBP3.18□□□□□ -1.9
SCN1A-221ENST00000641996 A0A1W2PR80 420 aa3.18□□□□□ -1.9
SCN1A-221ENST00000641996 SOCS2O14508 198 aa3.18□□□□□ -1.9
SCN1A-221ENST00000641996 HTR1DP28221 377 aa3.18□□□□□ -1.9
SCN1A-221ENST00000641996 Q5BKY6 102 aa3.18□□□□□ -1.9
SCN1A-221ENST00000641996 B3GNT8Q7Z7M8 397 aa3.18□□□□□ -1.9
SCN1A-221ENST00000641996 CHST4Q8NCG5 386 aa3.18□□□□□ -1.9
SCN1A-221ENST00000641996 OR1L8Q8NGR8 309 aa3.18□□□□□ -1.9
SCN1A-221ENST00000641996 GPR148Q8TDV2 347 aa3.18□□□□□ -1.9
SCN1A-221ENST00000641996 FBLIM1Q8WUP2 373 aa3.18□□□□□ -1.9
SCN1A-221ENST00000641996 SSBP4Q9BWG4 385 aaPredicted RBP3.18□□□□□ -1.9
SCN1A-221ENST00000641996 TVP23BQ9NYZ1 205 aa3.18□□□□□ -1.9
SCN1A-221ENST00000641996 FOXJ3Q9UPW0 622 aa3.18□□□□□ -1.9
SCN1A-221ENST00000641996 NOS1P29475 1434 aa3.18□□□□□ -1.9
SCN1A-221ENST00000641996 DLL1O00548 723 aa3.18□□□□□ -1.9
SCN1A-221ENST00000641996 GSTZ1O43708 216 aaPredicted RBP3.18□□□□□ -1.9
SCN1A-221ENST00000641996 HBE1P02100 147 aa3.18□□□□□ -1.9
SCN1A-221ENST00000641996 PPBPP02775 128 aa3.18□□□□□ -1.9
SCN1A-221ENST00000641996 ZNF133P52736 654 aaPredicted RBP3.18□□□□□ -1.9
SCN1A-221ENST00000641996 ST3GAL2Q16842 350 aa3.18□□□□□ -1.9
SCN1A-221ENST00000641996 VWC2Q2TAL6 325 aa3.18□□□□□ -1.9
SCN1A-221ENST00000641996 DHRS11Q6UWP2 260 aa3.18□□□□□ -1.9
SCN1A-221ENST00000641996 OR2M7Q8NG81 312 aa3.18□□□□□ -1.9
SCN1A-221ENST00000641996 LMX1AQ8TE12 382 aa3.18□□□□□ -1.9
SCN1A-221ENST00000641996 WSB1Q9Y6I7 421 aa3.18□□□□□ -1.9
SCN1A-221ENST00000641996 TOPBP1Q92547 1522 aa3.18□□□□□ -1.9
SCN1A-221ENST00000641996 FAM135BQ49AJ0 1406 aa3.18□□□□□ -1.9
SCN1A-221ENST00000641996 USP42Q9H9J4 1324 aaKnown RBP3.18□□□□□ -1.9
SCN1A-221ENST00000641996 PPIAL4EA0A075B759 164 aa3.18□□□□□ -1.9
SCN1A-221ENST00000641996 B4DXG7 233 aa3.18□□□□□ -1.9
SCN1A-221ENST00000641996 C3orf80F5H4A9 247 aa3.18□□□□□ -1.9
SCN1A-221ENST00000641996 C1QCP02747 245 aa3.18□□□□□ -1.9
SCN1A-221ENST00000641996 CD3DP04234 171 aa3.18□□□□□ -1.9
SCN1A-221ENST00000641996 PPIAL4FP0DN26 164 aa3.18□□□□□ -1.9
SCN1A-221ENST00000641996 BCKDHAP12694 445 aa3.18□□□□□ -1.9
SCN1A-221ENST00000641996 AVPR1BP47901 424 aa3.18□□□□□ -1.9
SCN1A-221ENST00000641996 EVX2Q03828 476 aa3.18□□□□□ -1.9
SCN1A-221ENST00000641996 OR1Q1Q15612 314 aa3.18□□□□□ -1.9
SCN1A-221ENST00000641996 C9orf153Q5TBE3 101 aa3.18□□□□□ -1.9
SCN1A-221ENST00000641996 VN1R17PQ8TDU5 208 aa3.18□□□□□ -1.9
SCN1A-221ENST00000641996 ACY3Q96HD9 319 aa3.18□□□□□ -1.9
SCN1A-221ENST00000641996 RAX2Q96IS3 184 aa3.18□□□□□ -1.9
SCN1A-221ENST00000641996 ADGRL4Q9HBW9 690 aa3.18□□□□□ -1.9
SCN1A-221ENST00000641996 A0A1W2PRF3 423 aa3.18□□□□□ -1.9
SCN1A-221ENST00000641996 A0A1W2PRM7 423 aa3.18□□□□□ -1.9
SCN1A-221ENST00000641996 ZNF860A6NHJ4 632 aa3.18□□□□□ -1.9
SCN1A-221ENST00000641996 DIRC3C9JPN6 131 aa3.18□□□□□ -1.9
SCN1A-221ENST00000641996 CLDN5O00501 218 aa3.18□□□□□ -1.9
SCN1A-221ENST00000641996 DSCR3O14972 297 aa3.18□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms