RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 MMP15P51511 669 aa5.51□□□□□ -1.53
SCN1A-217ENST00000637988 BTG2P78543 158 aa5.51□□□□□ -1.53
SCN1A-217ENST00000637988 CORO6Q6QEF8 472 aa5.51□□□□□ -1.53
SCN1A-217ENST00000637988 FA2HQ7L5A8 372 aa5.51□□□□□ -1.53
SCN1A-217ENST00000637988 DUSP18Q8NEJ0 188 aa5.51□□□□□ -1.53
SCN1A-217ENST00000637988 LGALS14Q8TCE9 139 aa5.51□□□□□ -1.53
SCN1A-217ENST00000637988 LRRC29Q8WV35 223 aa5.51□□□□□ -1.53
SCN1A-217ENST00000637988 KTI12Q96EK9 354 aaPredicted RBP5.51□□□□□ -1.53
SCN1A-217ENST00000637988 GDF2Q9UK05 429 aaPredicted RBP5.51□□□□□ -1.53
SCN1A-217ENST00000637988 CLEC18AA5D8T8 446 aa5.51□□□□□ -1.53
SCN1A-217ENST00000637988 ARNTLO00327 626 aa5.51□□□□□ -1.53
SCN1A-217ENST00000637988 ST8SIA3O43173 380 aa5.51□□□□□ -1.53
SCN1A-217ENST00000637988 GPX5O75715 221 aa5.51□□□□□ -1.53
SCN1A-217ENST00000637988 PMS2P2O95744 297 aa5.51□□□□□ -1.53
SCN1A-217ENST00000637988 EML2O95834 649 aa5.51□□□□□ -1.53
SCN1A-217ENST00000637988 CEACAM6P40199 344 aa5.51□□□□□ -1.53
SCN1A-217ENST00000637988 MAGEB1P43366 347 aa5.51□□□□□ -1.53
SCN1A-217ENST00000637988 HTR6P50406 440 aa5.51□□□□□ -1.53
SCN1A-217ENST00000637988 GFRA1P56159 465 aa5.51□□□□□ -1.53
SCN1A-217ENST00000637988 PFN3P60673 137 aa5.51□□□□□ -1.53
SCN1A-217ENST00000637988 TNXAQ16473 311 aa5.51□□□□□ -1.53
SCN1A-217ENST00000637988 ACKR1Q16570 336 aa5.51□□□□□ -1.53
SCN1A-217ENST00000637988 SOWAHCQ53LP3 525 aaPredicted RBP5.51□□□□□ -1.53
SCN1A-217ENST00000637988 CLEC18CQ8NCF0 446 aa5.51□□□□□ -1.53
SCN1A-217ENST00000637988 Q8WTZ3 238 aa5.51□□□□□ -1.53
SCN1A-217ENST00000637988 TNRC6CQ9HCJ0 1690 aaKnown RBP5.51□□□□□ -1.53
SCN1A-217ENST00000637988 TP53BP1Q12888 1972 aaPredicted RBP5.51□□□□□ -1.53
SCN1A-217ENST00000637988 XIRP1Q702N8 1843 aaKnown RBP5.51□□□□□ -1.53
SCN1A-217ENST00000637988 E5RGE8 158 aa5.51□□□□□ -1.53
SCN1A-217ENST00000637988 ZNF207O43670 478 aaKnown RBP5.51□□□□□ -1.53
SCN1A-217ENST00000637988 ZNF354AO60765 605 aaPredicted RBP5.51□□□□□ -1.53
SCN1A-217ENST00000637988 LOXL3P58215 753 aa5.51□□□□□ -1.53
SCN1A-217ENST00000637988 ZNF239Q16600 458 aaKnown RBP5.51□□□□□ -1.53
SCN1A-217ENST00000637988 ECSCRQ19T08 205 aa5.51□□□□□ -1.53
SCN1A-217ENST00000637988 NRN1LQ496H8 165 aa5.51□□□□□ -1.53
SCN1A-217ENST00000637988 C19orf54Q5BKX5 351 aa5.51□□□□□ -1.53
SCN1A-217ENST00000637988 GLIS1Q8NBF1 620 aa5.51□□□□□ -1.53
SCN1A-217ENST00000637988 GPX8Q8TED1 209 aa5.51□□□□□ -1.53
SCN1A-217ENST00000637988 EGLN2Q96KS0 407 aa5.51□□□□□ -1.53
SCN1A-217ENST00000637988 SDF2Q99470 211 aa5.51□□□□□ -1.53
SCN1A-217ENST00000637988 ZNF2Q9BSG1 426 aaPredicted RBP5.51□□□□□ -1.53
SCN1A-217ENST00000637988 AP5S1Q9NUS5 200 aa5.51□□□□□ -1.53
SCN1A-217ENST00000637988 TAS2R4Q9NYW5 299 aa5.51□□□□□ -1.53
SCN1A-217ENST00000637988 ANXA10Q9UJ72 324 aa5.51□□□□□ -1.53
SCN1A-217ENST00000637988 YBX2Q9Y2T7 364 aaKnown RBP5.51□□□□□ -1.53
SCN1A-217ENST00000637988 TYROBPO43914 113 aa5.5□□□□□ -1.53
SCN1A-217ENST00000637988 NME2P1O60361 137 aa5.5□□□□□ -1.53
SCN1A-217ENST00000637988 SLC16A11Q8NCK7 471 aa5.5□□□□□ -1.53
SCN1A-217ENST00000637988 OR2Y1Q8NGV0 311 aa5.5□□□□□ -1.53
SCN1A-217ENST00000637988 TMED6Q8WW62 240 aa5.5□□□□□ -1.53
SCN1A-217ENST00000637988 DDB2Q92466 427 aa5.5□□□□□ -1.53
SCN1A-217ENST00000637988 J3KTA2 159 aa5.5□□□□□ -1.53
SCN1A-217ENST00000637988 KRASP01116 189 aa5.5□□□□□ -1.53
SCN1A-217ENST00000637988 CA6P23280 308 aa5.5□□□□□ -1.53
SCN1A-217ENST00000637988 HERVK_113P61574 105 aa5.5□□□□□ -1.53
SCN1A-217ENST00000637988 RELBQ01201 579 aa5.5□□□□□ -1.53
SCN1A-217ENST00000637988 SMRP1Q8NCR6 262 aa5.5□□□□□ -1.53
SCN1A-217ENST00000637988 RNF141Q8WVD5 230 aa5.5□□□□□ -1.53
SCN1A-217ENST00000637988 PERPQ96FX8 193 aa5.5□□□□□ -1.53
SCN1A-217ENST00000637988 GMPPAQ96IJ6 420 aaPredicted RBP5.5□□□□□ -1.53
SCN1A-217ENST00000637988 ZNF665Q9H7R5 613 aa5.5□□□□□ -1.53
SCN1A-217ENST00000637988 TAF9BQ9HBM6 251 aa5.5□□□□□ -1.53
SCN1A-217ENST00000637988 PCOLCE2Q9UKZ9 415 aa5.5□□□□□ -1.53
SCN1A-217ENST00000637988 AKAP6Q13023 2319 aa5.5□□□□□ -1.53
SCN1A-217ENST00000637988 TRIOBPQ9H2D6 2365 aa5.5□□□□□ -1.53
SCN1A-217ENST00000637988 A0A0B4J2A0 478 aa5.5□□□□□ -1.53
SCN1A-217ENST00000637988 FAM24AA6NFZ4 105 aa5.5□□□□□ -1.53
SCN1A-217ENST00000637988 ASCL1P50553 236 aa5.5□□□□□ -1.53
SCN1A-217ENST00000637988 NUTF2P61970 127 aaKnown RBP5.5□□□□□ -1.53
SCN1A-217ENST00000637988 RPS25P62851 125 aaKnown RBP5.5□□□□□ -1.53
SCN1A-217ENST00000637988 PAX5Q02548 391 aa5.5□□□□□ -1.53
SCN1A-217ENST00000637988 ENDOGQ14249 297 aaKnown RBP5.5□□□□□ -1.53
SCN1A-217ENST00000637988 OR1B1Q8NGR6 318 aa5.5□□□□□ -1.53
SCN1A-217ENST00000637988 COPS9Q8WXC6 57 aa5.5□□□□□ -1.53
SCN1A-217ENST00000637988 PKMYT1Q99640 499 aa5.5□□□□□ -1.53
SCN1A-217ENST00000637988 CD300AQ9UGN4 299 aa5.5□□□□□ -1.53
SCN1A-217ENST00000637988 SHPKQ9UHJ6 478 aa5.5□□□□□ -1.53
SCN1A-217ENST00000637988 GPR45Q9Y5Y3 372 aa5.5□□□□□ -1.53
SCN1A-217ENST00000637988 NACAE9PAV3 2078 aa5.5□□□□□ -1.53
SCN1A-217ENST00000637988 PATJQ8NI35 1801 aa5.5□□□□□ -1.53
SCN1A-217ENST00000637988 ARPC4-TTLL3A0A0A6YYG9 625 aa5.5□□□□□ -1.53
SCN1A-217ENST00000637988 ACAA1P09110 424 aaPredicted RBP5.5□□□□□ -1.53
SCN1A-217ENST00000637988 FAM87AP0C7U9 286 aa5.5□□□□□ -1.53
SCN1A-217ENST00000637988 APEHP13798 732 aaKnown RBP5.5□□□□□ -1.53
SCN1A-217ENST00000637988 ZNF691Q5VV52 312 aa5.5□□□□□ -1.53
SCN1A-217ENST00000637988 DHRS7BQ6IAN0 325 aaPredicted RBP5.5□□□□□ -1.53
SCN1A-217ENST00000637988 CCL4L1Q8NHW4 92 aa5.5□□□□□ -1.53
SCN1A-217ENST00000637988 OR1A1Q9P1Q5 309 aa5.5□□□□□ -1.53
SCN1A-217ENST00000637988 LIPGQ9Y5X9 500 aa5.5□□□□□ -1.53
SCN1A-217ENST00000637988 CACNA1GO43497 2377 aa5.5□□□□□ -1.53
SCN1A-217ENST00000637988 IGLV3-10A0A075B6K4 115 aa5.5□□□□□ -1.53
SCN1A-217ENST00000637988 CXorf51AA0A1B0GTR3 108 aa5.5□□□□□ -1.53
SCN1A-217ENST00000637988 NGFP01138 241 aa5.5□□□□□ -1.53
SCN1A-217ENST00000637988 CD200P41217 278 aa5.5□□□□□ -1.53
SCN1A-217ENST00000637988 RPS10P46783 165 aaKnown RBP5.5□□□□□ -1.53
SCN1A-217ENST00000637988 LSM11P83369 360 aaKnown RBP eCLIP5.5□□□□□ -1.53
SCN1A-217ENST00000637988 HIST2H3AQ71DI3 136 aa5.5□□□□□ -1.53
SCN1A-217ENST00000637988 UBE3DQ7Z6J8 389 aa5.5□□□□□ -1.53
SCN1A-217ENST00000637988 SIGLECL1Q8N7X8 197 aa5.5□□□□□ -1.53
SCN1A-217ENST00000637988 DEDD2Q8WXF8 326 aa5.5□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 53.5 ms