RNA–Protein interactions for RNA: ENST00000637985.1

CLN3-264, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 764 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-264ENST00000637985 SPATA24Q86W54 205 aa13.31□□□□□ -0.28
CLN3-264ENST00000637985 ZNF454Q8N9F8 522 aa13.31□□□□□ -0.28
CLN3-264ENST00000637985 PAPD5Q8NDF8 572 aaKnown RBP13.31□□□□□ -0.28
CLN3-264ENST00000637985 SGK3Q96BR1 496 aa13.31□□□□□ -0.28
CLN3-264ENST00000637985 REEP6Q96HR9 211 aa13.31□□□□□ -0.28
CLN3-264ENST00000637985 TEX12Q9BXU0 123 aa13.31□□□□□ -0.28
CLN3-264ENST00000637985 OR51V1Q9H2C8 321 aa13.31□□□□□ -0.28
CLN3-264ENST00000637985 FAM53CQ9NYF3 392 aa13.31□□□□□ -0.28
CLN3-264ENST00000637985 DNAJB9Q9UBS3 223 aa13.31□□□□□ -0.28
CLN3-264ENST00000637985 STAB2Q8WWQ8 2551 aa13.31□□□□□ -0.28
CLN3-264ENST00000637985 TRAV38-1A0A0B4J264 116 aa13.3□□□□□ -0.28
CLN3-264ENST00000637985 TCRBV3S1A0A5B6 114 aa13.3□□□□□ -0.28
CLN3-264ENST00000637985 NPFFO15130 113 aa13.3□□□□□ -0.28
CLN3-264ENST00000637985 PRODHO43272 600 aa13.3□□□□□ -0.28
CLN3-264ENST00000637985 FKBP6O75344 327 aa13.3□□□□□ -0.28
CLN3-264ENST00000637985 DNAJC8O75937 253 aaPredicted RBP13.3□□□□□ -0.28
CLN3-264ENST00000637985 ECDO95905 644 aaPredicted RBP13.3□□□□□ -0.28
CLN3-264ENST00000637985 PAHP00439 452 aa13.3□□□□□ -0.28
CLN3-264ENST00000637985 H2BFMP0C1H6 154 aa13.3□□□□□ -0.28
CLN3-264ENST00000637985 OPRL1P41146 370 aa13.3□□□□□ -0.28
CLN3-264ENST00000637985 CBX1P83916 185 aa13.3□□□□□ -0.28
CLN3-264ENST00000637985 GUCA2AQ02747 115 aa13.3□□□□□ -0.28
CLN3-264ENST00000637985 SNCBQ16143 134 aa13.3□□□□□ -0.28
CLN3-264ENST00000637985 SLC35D3Q5M8T2 416 aa13.3□□□□□ -0.28
CLN3-264ENST00000637985 SFRP4Q6FHJ7 346 aaPredicted RBP13.3□□□□□ -0.28
CLN3-264ENST00000637985 PLBD1Q6P4A8 553 aa13.3□□□□□ -0.28
CLN3-264ENST00000637985 HIST2H2ABQ8IUE6 130 aaPredicted RBP13.3□□□□□ -0.28
CLN3-264ENST00000637985 OTOSQ8NHW6 89 aa13.3□□□□□ -0.28
CLN3-264ENST00000637985 DNAJC9Q8WXX5 260 aa13.3□□□□□ -0.28
CLN3-264ENST00000637985 SLC7A6OSQ96CW6 309 aaPredicted RBP13.3□□□□□ -0.28
CLN3-264ENST00000637985 OR10A2Q9H208 303 aa13.3□□□□□ -0.28
CLN3-264ENST00000637985 RGCCQ9H4X1 137 aa13.3□□□□□ -0.28
CLN3-264ENST00000637985 C1orf123Q9NWV4 160 aa13.3□□□□□ -0.28
CLN3-264ENST00000637985 RPUSD1Q9UJJ7 312 aaKnown RBP13.3□□□□□ -0.28
CLN3-264ENST00000637985 POMPQ9Y244 141 aa13.3□□□□□ -0.28
CLN3-264ENST00000637985 hCG_38984A0A1B0GV85 526 aa13.29□□□□□ -0.28
CLN3-264ENST00000637985 H3BUX3 64 aa13.29□□□□□ -0.28
CLN3-264ENST00000637985 GRPP07492 148 aa13.29□□□□□ -0.28
CLN3-264ENST00000637985 LYNP07948 512 aa13.29□□□□□ -0.28
CLN3-264ENST00000637985 EEF1B2P24534 225 aaKnown RBP13.29□□□□□ -0.28
CLN3-264ENST00000637985 ZNF121P58317 390 aaPredicted RBP13.29□□□□□ -0.28
CLN3-264ENST00000637985 CRIP3Q6Q6R5 217 aa13.29□□□□□ -0.28
CLN3-264ENST00000637985 FAM57BQ71RH2 274 aa13.29□□□□□ -0.28
CLN3-264ENST00000637985 HS3ST5Q8IZT8 346 aa13.29□□□□□ -0.28
CLN3-264ENST00000637985 CSNK2A3Q8NEV1 391 aa13.29□□□□□ -0.28
CLN3-264ENST00000637985 OR8S1Q8NH09 359 aa13.29□□□□□ -0.28
CLN3-264ENST00000637985 WIPF2Q8TF74 440 aaPredicted RBP13.29□□□□□ -0.28
CLN3-264ENST00000637985 NRBF2Q96F24 287 aa13.29□□□□□ -0.28
CLN3-264ENST00000637985 AMELYQ99218 206 aa13.29□□□□□ -0.28
CLN3-264ENST00000637985 CITED2Q99967 270 aaPredicted RBP13.29□□□□□ -0.28
CLN3-264ENST00000637985 DNAJC27Q9NZQ0 273 aa13.29□□□□□ -0.28
CLN3-264ENST00000637985 U3KQK5 164 aa13.29□□□□□ -0.28
CLN3-264ENST00000637985 DNAH7Q8WXX0 4024 aa13.29□□□□□ -0.28
CLN3-264ENST00000637985 MEGF11A6BM72 1044 aa13.28□□□□□ -0.28
CLN3-264ENST00000637985 OOEPA6NGQ2 149 aa13.28□□□□□ -0.28
CLN3-264ENST00000637985 A6NLC8 198 aa13.28□□□□□ -0.28
CLN3-264ENST00000637985 TIPRLO75663 272 aa13.28□□□□□ -0.28
CLN3-264ENST00000637985 LHBP01229 141 aa13.28□□□□□ -0.28
CLN3-264ENST00000637985 PRKACGP22612 351 aa13.28□□□□□ -0.28
CLN3-264ENST00000637985 GSK3AP49840 483 aa13.28□□□□□ -0.28
CLN3-264ENST00000637985 PRB3Q04118 309 aaPredicted RBP13.28□□□□□ -0.28
CLN3-264ENST00000637985 EGFEM1PQ0D2K5 195 aa13.28□□□□□ -0.28
CLN3-264ENST00000637985 OR8B8Q15620 311 aa13.28□□□□□ -0.28
CLN3-264ENST00000637985 KLHL12Q53G59 568 aa13.28□□□□□ -0.28
CLN3-264ENST00000637985 CPOQ8IVL8 374 aa13.28□□□□□ -0.28
CLN3-264ENST00000637985 FTMTQ8N4E7 242 aa13.28□□□□□ -0.28
CLN3-264ENST00000637985 GCSAMQ8N6F7 178 aa13.28□□□□□ -0.28
CLN3-264ENST00000637985 BOLLQ8N9W6 283 aaKnown RBP13.28□□□□□ -0.28
CLN3-264ENST00000637985 LY6G5BQ8NDX9 201 aa13.28□□□□□ -0.28
CLN3-264ENST00000637985 BEND2Q8NDZ0 799 aa13.28□□□□□ -0.28
CLN3-264ENST00000637985 THEM6Q8WUY1 208 aa13.28□□□□□ -0.28
CLN3-264ENST00000637985 PGAM5Q96HS1 289 aa13.28□□□□□ -0.28
CLN3-264ENST00000637985 NIPAL2Q9H841 368 aa13.28□□□□□ -0.28
CLN3-264ENST00000637985 RNPEPL1Q9HAU8 725 aa13.28□□□□□ -0.28
CLN3-264ENST00000637985 SLC25A19Q9HC21 320 aa13.28□□□□□ -0.28
CLN3-264ENST00000637985 SIRT7Q9NRC8 400 aa13.28□□□□□ -0.28
CLN3-264ENST00000637985 LYSTQ99698 3801 aa13.28□□□□□ -0.28
CLN3-264ENST00000637985 A0A1W2PRD5 423 aa13.27□□□□□ -0.29
CLN3-264ENST00000637985 A0A1W2PRF3 423 aa13.27□□□□□ -0.29
CLN3-264ENST00000637985 A0A1W2PRM7 423 aa13.27□□□□□ -0.29
CLN3-264ENST00000637985 hCG_1807616A0A1W2PRN6 198 aa13.27□□□□□ -0.29
CLN3-264ENST00000637985 DVL1O14640 695 aa13.27□□□□□ -0.29
CLN3-264ENST00000637985 SELENOFO60613 162 aa13.27□□□□□ -0.29
CLN3-264ENST00000637985 NHLRC4P0CG21 123 aaPredicted RBP13.27□□□□□ -0.29
CLN3-264ENST00000637985 SAA4P35542 130 aa13.27□□□□□ -0.29
CLN3-264ENST00000637985 DTX3Q8N9I9 347 aa13.27□□□□□ -0.29
CLN3-264ENST00000637985 SSX3Q99909 188 aa13.27□□□□□ -0.29
CLN3-264ENST00000637985 RAB18Q9NP72 206 aa13.27□□□□□ -0.29
CLN3-264ENST00000637985 SERTAD4Q9NUC0 356 aa13.27□□□□□ -0.29
CLN3-264ENST00000637985 ZNF319Q9P2F9 582 aa13.27□□□□□ -0.29
CLN3-264ENST00000637985 ZNF391Q9UJN7 358 aa13.27□□□□□ -0.29
CLN3-264ENST00000637985 PCDHGB5Q9Y5G0 923 aa13.27□□□□□ -0.29
CLN3-264ENST00000637985 MEIOCA2RUB1 952 aa13.26□□□□□ -0.29
CLN3-264ENST00000637985 E9PQ18 207 aa13.26□□□□□ -0.29
CLN3-264ENST00000637985 GSC2O15499 205 aa13.26□□□□□ -0.29
CLN3-264ENST00000637985 SLC2A5P22732 501 aa13.26□□□□□ -0.29
CLN3-264ENST00000637985 GNALP38405 381 aa13.26□□□□□ -0.29
CLN3-264ENST00000637985 DLX1P56177 255 aa13.26□□□□□ -0.29
CLN3-264ENST00000637985 RPS7P62081 194 aaKnown RBP13.26□□□□□ -0.29
CLN3-264ENST00000637985 IL5RAQ01344 420 aa13.26□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms