RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 LYZL4Q96KX0 146 aa16.05■□□□□ 0.16
CLN3-260ENST00000637578 ACOXLQ9NUZ1 547 aa16.05■□□□□ 0.16
CLN3-260ENST00000637578 FKBP14Q9NWM8 211 aa16.05■□□□□ 0.16
CLN3-260ENST00000637578 C1orf123Q9NWV4 160 aa16.05■□□□□ 0.16
CLN3-260ENST00000637578 OR5V1Q9UGF6 321 aa16.05■□□□□ 0.16
CLN3-260ENST00000637578 DIMT1Q9UNQ2 313 aaKnown RBP16.05■□□□□ 0.16
CLN3-260ENST00000637578 RHBDD3Q9Y3P4 386 aa16.05■□□□□ 0.16
CLN3-260ENST00000637578 TMEM269A0A1B0GVZ9 245 aa16.04■□□□□ 0.16
CLN3-260ENST00000637578 LGALS8O00214 317 aa16.04■□□□□ 0.16
CLN3-260ENST00000637578 RPP14O95059 124 aaKnown RBP16.04■□□□□ 0.16
CLN3-260ENST00000637578 LIMS3P0CW19 117 aa16.04■□□□□ 0.16
CLN3-260ENST00000637578 LIMS4P0CW20 117 aa16.04■□□□□ 0.16
CLN3-260ENST00000637578 ACKR3P25106 362 aa16.04■□□□□ 0.16
CLN3-260ENST00000637578 ETV1P50549 477 aa16.04■□□□□ 0.16
CLN3-260ENST00000637578 ACTA2P62736 377 aa16.04■□□□□ 0.16
CLN3-260ENST00000637578 ACTG2P63267 376 aa16.04■□□□□ 0.16
CLN3-260ENST00000637578 CSNK2BP67870 215 aa16.04■□□□□ 0.16
CLN3-260ENST00000637578 NLRC3Q7RTR2 1065 aa16.04■□□□□ 0.16
CLN3-260ENST00000637578 FAM220AQ7Z4H9 259 aa16.04■□□□□ 0.16
CLN3-260ENST00000637578 GCSAMQ8N6F7 178 aa16.04■□□□□ 0.16
CLN3-260ENST00000637578 C19orf18Q8NEA5 215 aa16.04■□□□□ 0.16
CLN3-260ENST00000637578 OR8B12Q8NGG6 310 aa16.04■□□□□ 0.16
CLN3-260ENST00000637578 OR8B3Q8NGG8 313 aa16.04■□□□□ 0.16
CLN3-260ENST00000637578 ZFAND2BQ8WV99 257 aa16.04■□□□□ 0.16
CLN3-260ENST00000637578 TMEM80Q96HE8 168 aa16.04■□□□□ 0.16
CLN3-260ENST00000637578 C4orf36Q96KX1 117 aa16.04■□□□□ 0.16
CLN3-260ENST00000637578 OR8B2Q96RD0 313 aa16.04■□□□□ 0.16
CLN3-260ENST00000637578 PPP1R3EQ9H7J1 279 aa16.04■□□□□ 0.16
CLN3-260ENST00000637578 AUP1Q9Y679 476 aa16.04■□□□□ 0.16
CLN3-260ENST00000637578 R4GMQ9 66 aa16.04■□□□□ 0.16
CLN3-260ENST00000637578 CST4P01036 141 aa16.04■□□□□ 0.16
CLN3-260ENST00000637578 GRPP07492 148 aa16.04■□□□□ 0.16
CLN3-260ENST00000637578 PPIAL4GP0DN37 164 aa16.04■□□□□ 0.16
CLN3-260ENST00000637578 CD80P33681 288 aa16.04■□□□□ 0.16
CLN3-260ENST00000637578 PITPNBP48739 271 aa16.04■□□□□ 0.16
CLN3-260ENST00000637578 HILS1P60008 231 aa16.04■□□□□ 0.16
CLN3-260ENST00000637578 GNB2P62879 340 aa16.04■□□□□ 0.16
CLN3-260ENST00000637578 ZNF826PQ6ZT77 177 aa16.04■□□□□ 0.16
CLN3-260ENST00000637578 OR1M1Q8NGA1 313 aa16.04■□□□□ 0.16
CLN3-260ENST00000637578 OR8S1Q8NH09 359 aa16.04■□□□□ 0.16
CLN3-260ENST00000637578 ZNF418Q8TF45 676 aaPredicted RBP16.04■□□□□ 0.16
CLN3-260ENST00000637578 RAB40AQ8WXH6 277 aa16.04■□□□□ 0.16
CLN3-260ENST00000637578 ITFG2Q969R8 447 aa16.04■□□□□ 0.16
CLN3-260ENST00000637578 ITPKCQ96DU7 683 aa16.04■□□□□ 0.16
CLN3-260ENST00000637578 MRPL48Q96GC5 212 aaKnown RBP16.04■□□□□ 0.16
CLN3-260ENST00000637578 TLNRD1Q9H1K6 362 aa16.04■□□□□ 0.16
CLN3-260ENST00000637578 IGHV2-70DA0A0C4DH43 119 aa16.03■□□□□ 0.16
CLN3-260ENST00000637578 A0A0U1RQV5 110 aa16.03■□□□□ 0.16
CLN3-260ENST00000637578 PTGES3LE9PB15 166 aa16.03■□□□□ 0.16
CLN3-260ENST00000637578 LOC110117498-PIK3R3F6TDL0 507 aa16.03■□□□□ 0.16
CLN3-260ENST00000637578 J3QLW9 94 aa16.03■□□□□ 0.16
CLN3-260ENST00000637578 CCDC159P0C7I6 412 aa16.03■□□□□ 0.16
CLN3-260ENST00000637578 ZNF19P17023 458 aa16.03■□□□□ 0.16
CLN3-260ENST00000637578 MYL12AP19105 171 aa16.03■□□□□ 0.16
CLN3-260ENST00000637578 CFHR2P36980 270 aa16.03■□□□□ 0.16
CLN3-260ENST00000637578 KCNJ8Q15842 424 aa16.03■□□□□ 0.16
CLN3-260ENST00000637578 GFOD2Q3B7J2 385 aa16.03■□□□□ 0.16
CLN3-260ENST00000637578 TEX36Q5VZQ5 186 aa16.03■□□□□ 0.16
CLN3-260ENST00000637578 WDR25Q64LD2 544 aaPredicted RBP16.03■□□□□ 0.16
CLN3-260ENST00000637578 KCTD20Q7Z5Y7 419 aa16.03■□□□□ 0.16
CLN3-260ENST00000637578 STX19Q8N4C7 294 aa16.03■□□□□ 0.16
CLN3-260ENST00000637578 FTMTQ8N4E7 242 aa16.03■□□□□ 0.16
CLN3-260ENST00000637578 SGCDQ92629 289 aa16.03■□□□□ 0.16
CLN3-260ENST00000637578 RORBQ92753 470 aa16.03■□□□□ 0.16
CLN3-260ENST00000637578 PPP1R14AQ96A00 147 aa16.03■□□□□ 0.16
CLN3-260ENST00000637578 PBOV1Q9GZY1 135 aa16.03■□□□□ 0.16
CLN3-260ENST00000637578 ISG20L2Q9H9L3 353 aaKnown RBP16.03■□□□□ 0.16
CLN3-260ENST00000637578 TRIM36Q9NQ86 728 aa16.03■□□□□ 0.16
CLN3-260ENST00000637578 PAK1IP1Q9NWT1 392 aaPredicted RBP16.03■□□□□ 0.16
CLN3-260ENST00000637578 SCN3BQ9NY72 215 aa16.03■□□□□ 0.16
CLN3-260ENST00000637578 NUFIP1Q9UHK0 495 aaKnown RBP16.03■□□□□ 0.16
CLN3-260ENST00000637578 CLEC2DQ9UHP7 191 aa16.03■□□□□ 0.16
CLN3-260ENST00000637578 GTF2A1LQ9UNN4 478 aa16.03■□□□□ 0.16
CLN3-260ENST00000637578 EXOSC1Q9Y3B2 195 aaKnown RBP16.03■□□□□ 0.16
CLN3-260ENST00000637578 MPC1Q9Y5U8 109 aa16.03■□□□□ 0.16
CLN3-260ENST00000637578 KIR2DS1A0A191URI9 304 aa16.02■□□□□ 0.16
CLN3-260ENST00000637578 OOEPA6NGQ2 149 aa16.02■□□□□ 0.16
CLN3-260ENST00000637578 NDUFA2O43678 99 aa16.02■□□□□ 0.16
CLN3-260ENST00000637578 IGLV3-1P01715 115 aa16.02■□□□□ 0.16
CLN3-260ENST00000637578 C21orf33P30042 268 aaPredicted RBP16.02■□□□□ 0.16
CLN3-260ENST00000637578 KLF17Q5JT82 389 aaPredicted RBP16.02■□□□□ 0.16
CLN3-260ENST00000637578 SFRP4Q6FHJ7 346 aaPredicted RBP16.02■□□□□ 0.16
CLN3-260ENST00000637578 SYS1Q8N2H4 156 aa16.02■□□□□ 0.16
CLN3-260ENST00000637578 RNF166Q96A37 237 aaPredicted RBP16.02■□□□□ 0.16
CLN3-260ENST00000637578 PELI1Q96FA3 418 aa16.02■□□□□ 0.16
CLN3-260ENST00000637578 PAPOLGQ9BWT3 736 aaKnown RBP16.02■□□□□ 0.16
CLN3-260ENST00000637578 CTSZQ9UBR2 303 aa16.02■□□□□ 0.16
CLN3-260ENST00000637578 CLN8Q9UBY8 286 aa16.02■□□□□ 0.16
CLN3-260ENST00000637578 TRAV38-1A0A0B4J264 116 aa16.01■□□□□ 0.15
CLN3-260ENST00000637578 A6NLC8 198 aa16.01■□□□□ 0.15
CLN3-260ENST00000637578 C3orf80F5H4A9 247 aa16.01■□□□□ 0.15
CLN3-260ENST00000637578 CRHBPP24387 322 aa16.01■□□□□ 0.15
CLN3-260ENST00000637578 GNALP38405 381 aa16.01■□□□□ 0.15
CLN3-260ENST00000637578 NPY4RP50391 375 aa16.01■□□□□ 0.15
CLN3-260ENST00000637578 FAM76BQ5HYJ3 339 aa16.01■□□□□ 0.15
CLN3-260ENST00000637578 MYCBPQ99417 103 aaPredicted RBP16.01■□□□□ 0.15
CLN3-260ENST00000637578 MRI1Q9BV20 369 aa16.01■□□□□ 0.15
CLN3-260ENST00000637578 MOB1AQ9H8S9 216 aa16.01■□□□□ 0.15
CLN3-260ENST00000637578 ABCB9Q9NP78 766 aa16.01■□□□□ 0.15
CLN3-260ENST00000637578 OR52A1Q9UKL2 312 aa16.01■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 53.6 ms