RNA–Protein interactions for RNA: ENST00000637551.2

CLN3-259, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,083 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-259ENST00000637551 TGFAP01135 160 aa15.33■□□□□ 0.04
CLN3-259ENST00000637551 LIMS3P0CW19 117 aa15.33■□□□□ 0.04
CLN3-259ENST00000637551 LIMS4P0CW20 117 aa15.33■□□□□ 0.04
CLN3-259ENST00000637551 NPY4RP50391 375 aa15.33■□□□□ 0.04
CLN3-259ENST00000637551 PRAMEF6Q5VXH4 476 aa15.33■□□□□ 0.04
CLN3-259ENST00000637551 PRSS35Q8N3Z0 413 aa15.33■□□□□ 0.04
CLN3-259ENST00000637551 OR52N1Q8NH53 320 aa15.33■□□□□ 0.04
CLN3-259ENST00000637551 ZNF420Q8TAQ5 688 aaPredicted RBP15.33■□□□□ 0.04
CLN3-259ENST00000637551 CNIH3Q8TBE1 160 aa15.33■□□□□ 0.04
CLN3-259ENST00000637551 NRG4Q8WWG1 115 aa15.33■□□□□ 0.04
CLN3-259ENST00000637551 PIGCQ92535 297 aa15.33■□□□□ 0.04
CLN3-259ENST00000637551 ANKRD60Q9BZ19 345 aa15.33■□□□□ 0.04
CLN3-259ENST00000637551 CHST5Q9GZS9 411 aa15.33■□□□□ 0.04
CLN3-259ENST00000637551 DNTTIP1Q9H147 329 aa15.33■□□□□ 0.04
CLN3-259ENST00000637551 TMEM165Q9HC07 324 aa15.33■□□□□ 0.04
CLN3-259ENST00000637551 AMBNQ9NP70 447 aa15.33■□□□□ 0.04
CLN3-259ENST00000637551 YAE1D1Q9NRH1 226 aa15.33■□□□□ 0.04
CLN3-259ENST00000637551 TREM2Q9NZC2 230 aa15.33■□□□□ 0.04
CLN3-259ENST00000637551 MXRA5Q9NR99 2828 aa15.33■□□□□ 0.04
CLN3-259ENST00000637551 LOC107986453A0A1B0GWG9 222 aa15.32■□□□□ 0.04
CLN3-259ENST00000637551 A6NLC8 198 aa15.32■□□□□ 0.04
CLN3-259ENST00000637551 SRRM5B3KS81 715 aa15.32■□□□□ 0.04
CLN3-259ENST00000637551 CLIC3O95833 236 aa15.32■□□□□ 0.04
CLN3-259ENST00000637551 SERPINA3P01011 423 aa15.32■□□□□ 0.04
CLN3-259ENST00000637551 ACAA1P09110 424 aaPredicted RBP15.32■□□□□ 0.04
CLN3-259ENST00000637551 GNAO1P09471 354 aa15.32■□□□□ 0.04
CLN3-259ENST00000637551 FAHP16930 419 aa15.32■□□□□ 0.04
CLN3-259ENST00000637551 THBS2P35442 1172 aa15.32■□□□□ 0.04
CLN3-259ENST00000637551 KIR3DL2P43630 455 aa15.32■□□□□ 0.04
CLN3-259ENST00000637551 GBX2P52951 348 aaPredicted RBP15.32■□□□□ 0.04
CLN3-259ENST00000637551 ALKBH1Q13686 389 aaKnown RBP15.32■□□□□ 0.04
CLN3-259ENST00000637551 RNLSQ5VYX0 342 aa15.32■□□□□ 0.04
CLN3-259ENST00000637551 WDR82Q6UXN9 313 aa15.32■□□□□ 0.04
CLN3-259ENST00000637551 UTS2BQ765I0 119 aa15.32■□□□□ 0.04
CLN3-259ENST00000637551 WDR86Q86TI4 376 aa15.32■□□□□ 0.04
CLN3-259ENST00000637551 ZNF573Q86YE8 665 aa15.32■□□□□ 0.04
CLN3-259ENST00000637551 RPS4Y2Q8TD47 263 aa15.32■□□□□ 0.04
CLN3-259ENST00000637551 TMEM80Q96HE8 168 aa15.32■□□□□ 0.04
CLN3-259ENST00000637551 DMRTB1Q96MA1 342 aa15.32■□□□□ 0.04
CLN3-259ENST00000637551 C1orf123Q9NWV4 160 aa15.32■□□□□ 0.04
CLN3-259ENST00000637551 CHCHD3Q9NX63 227 aaKnown RBP15.32■□□□□ 0.04
CLN3-259ENST00000637551 DCAF16Q9NXF7 216 aa15.32■□□□□ 0.04
CLN3-259ENST00000637551 FRRS1LQ9P0K9 344 aa15.32■□□□□ 0.04
CLN3-259ENST00000637551 KAAG1Q9UBP8 84 aa15.32■□□□□ 0.04
CLN3-259ENST00000637551 AASSQ9UDR5 926 aa15.32■□□□□ 0.04
CLN3-259ENST00000637551 HHLA2Q9UM44 414 aa15.32■□□□□ 0.04
CLN3-259ENST00000637551 ANKRD61A6NGH8 418 aa15.31■□□□□ 0.04
CLN3-259ENST00000637551 OOEPA6NGQ2 149 aa15.31■□□□□ 0.04
CLN3-259ENST00000637551 OR4C45A6NMZ5 311 aa15.31■□□□□ 0.04
CLN3-259ENST00000637551 CEACAM18A8MTB9 384 aa15.31■□□□□ 0.04
CLN3-259ENST00000637551 J3QLW9 94 aa15.31■□□□□ 0.04
CLN3-259ENST00000637551 P2RY10O00398 339 aa15.31■□□□□ 0.04
CLN3-259ENST00000637551 ALX3O95076 343 aa15.31■□□□□ 0.04
CLN3-259ENST00000637551 CYB5R3P00387 301 aaPredicted RBP15.31■□□□□ 0.04
CLN3-259ENST00000637551 ZNF19P17023 458 aa15.31■□□□□ 0.04
CLN3-259ENST00000637551 PSMB10P40306 273 aa15.31■□□□□ 0.04
CLN3-259ENST00000637551 SMN1Q16637 294 aaKnown RBP15.31■□□□□ 0.04
CLN3-259ENST00000637551 ESCO2Q56NI9 601 aa15.31■□□□□ 0.04
CLN3-259ENST00000637551 LHFPL3Q86UP9 236 aa15.31■□□□□ 0.04
CLN3-259ENST00000637551 FAM90A1Q86YD7 464 aa15.31■□□□□ 0.04
CLN3-259ENST00000637551 C11orf53Q8IXP5 236 aa15.31■□□□□ 0.04
CLN3-259ENST00000637551 GCSAMQ8N6F7 178 aa15.31■□□□□ 0.04
CLN3-259ENST00000637551 DNAAF1Q8NEP3 725 aa15.31■□□□□ 0.04
CLN3-259ENST00000637551 NEIL1Q96FI4 390 aaPredicted RBP15.31■□□□□ 0.04
CLN3-259ENST00000637551 RNF170Q96K19 258 aa15.31■□□□□ 0.04
CLN3-259ENST00000637551 OR51I2Q9H344 312 aa15.31■□□□□ 0.04
CLN3-259ENST00000637551 UFSP2Q9NUQ7 469 aa15.31■□□□□ 0.04
CLN3-259ENST00000637551 PSORS1C1Q9UIG5 152 aa15.31■□□□□ 0.04
CLN3-259ENST00000637551 A0A0G2JMP0 313 aa15.3■□□□□ 0.04
CLN3-259ENST00000637551 A0A0X1KG70 313 aa15.3■□□□□ 0.04
CLN3-259ENST00000637551 FAM157AC9JC47 383 aa15.3■□□□□ 0.04
CLN3-259ENST00000637551 INAFM1C9JVW0 142 aa15.3■□□□□ 0.04
CLN3-259ENST00000637551 ATP6V1G2O95670 118 aa15.3■□□□□ 0.04
CLN3-259ENST00000637551 GRPP07492 148 aa15.3■□□□□ 0.04
CLN3-259ENST00000637551 WNT2P09544 360 aa15.3■□□□□ 0.04
CLN3-259ENST00000637551 MPZP25189 248 aa15.3■□□□□ 0.04
CLN3-259ENST00000637551 AQP4P55087 323 aa15.3■□□□□ 0.04
CLN3-259ENST00000637551 TAS2R43P59537 309 aa15.3■□□□□ 0.04
CLN3-259ENST00000637551 SCGB2A2Q13296 93 aa15.3■□□□□ 0.04
CLN3-259ENST00000637551 MICBQ29980 383 aa15.3■□□□□ 0.04
CLN3-259ENST00000637551 CHRFAM7AQ494W8 412 aa15.3■□□□□ 0.04
CLN3-259ENST00000637551 PLCXD3Q63HM9 321 aa15.3■□□□□ 0.04
CLN3-259ENST00000637551 RPL22L1Q6P5R6 122 aaKnown RBP15.3■□□□□ 0.04
CLN3-259ENST00000637551 SCCPDHQ8NBX0 429 aa15.3■□□□□ 0.04
CLN3-259ENST00000637551 OR4M2Q8NGB6 313 aa15.3■□□□□ 0.04
CLN3-259ENST00000637551 OR8B3Q8NGG8 313 aa15.3■□□□□ 0.04
CLN3-259ENST00000637551 ZNF671Q8TAW3 534 aa15.3■□□□□ 0.04
CLN3-259ENST00000637551 DVL3Q92997 716 aaPredicted RBP15.3■□□□□ 0.04
CLN3-259ENST00000637551 OR8B2Q96RD0 313 aa15.3■□□□□ 0.04
CLN3-259ENST00000637551 TMEM246Q9BRR3 403 aa15.3■□□□□ 0.04
CLN3-259ENST00000637551 COMMD4Q9H0A8 199 aa15.3■□□□□ 0.04
CLN3-259ENST00000637551 NARFLQ9H6Q4 476 aa15.3■□□□□ 0.04
CLN3-259ENST00000637551 NEK6Q9HC98 313 aa15.3■□□□□ 0.04
CLN3-259ENST00000637551 FKBP14Q9NWM8 211 aa15.3■□□□□ 0.04
CLN3-259ENST00000637551 RASL12Q9NYN1 266 aa15.3■□□□□ 0.04
CLN3-259ENST00000637551 ERVK-18Q9QC07 812 aa15.3■□□□□ 0.04
CLN3-259ENST00000637551 POLDIP2Q9Y2S7 368 aa15.3■□□□□ 0.04
CLN3-259ENST00000637551 hCG_1807616A0A1W2PRN6 198 aa15.29■□□□□ 0.04
CLN3-259ENST00000637551 GPR37O15354 613 aa15.29■□□□□ 0.04
CLN3-259ENST00000637551 NOS1APO75052 506 aaPredicted RBP15.29■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms