RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 ZP1P60852 638 aa17.21■□□□□ 0.35
CLN3-250ENST00000636839 CNN3Q15417 329 aaKnown RBP17.21■□□□□ 0.35
CLN3-250ENST00000636839 SLC22A6Q4U2R8 563 aa17.21■□□□□ 0.35
CLN3-250ENST00000636839 RNASE12Q5GAN4 147 aaKnown RBP17.21■□□□□ 0.35
CLN3-250ENST00000636839 ZBTB37Q5TC79 503 aa17.21■□□□□ 0.35
CLN3-250ENST00000636839 VHLLQ6RSH7 139 aa17.21■□□□□ 0.35
CLN3-250ENST00000636839 LRP11Q86VZ4 500 aa17.21■□□□□ 0.35
CLN3-250ENST00000636839 CALHM1Q8IU99 346 aa17.21■□□□□ 0.35
CLN3-250ENST00000636839 CSNK2A3Q8NEV1 391 aa17.21■□□□□ 0.35
CLN3-250ENST00000636839 LINC01560Q8TB33 94 aa17.21■□□□□ 0.35
CLN3-250ENST00000636839 CA5BP1Q8WTZ4 195 aa17.21■□□□□ 0.35
CLN3-250ENST00000636839 ITFG2Q969R8 447 aa17.21■□□□□ 0.35
CLN3-250ENST00000636839 SPSB1Q96BD6 273 aa17.21■□□□□ 0.35
CLN3-250ENST00000636839 BORCS8Q96FH0 119 aa17.21■□□□□ 0.35
CLN3-250ENST00000636839 RADILQ96JH8 1075 aa17.21■□□□□ 0.35
CLN3-250ENST00000636839 MRI1Q9BV20 369 aa17.21■□□□□ 0.35
CLN3-250ENST00000636839 OPA3Q9H6K4 179 aa17.21■□□□□ 0.35
CLN3-250ENST00000636839 CRYAAP02489 173 aa17.21■□□□□ 0.35
CLN3-250ENST00000636839 RAC2P15153 192 aa17.21■□□□□ 0.35
CLN3-250ENST00000636839 SNTB2Q13425 540 aaKnown RBP17.21■□□□□ 0.35
CLN3-250ENST00000636839 RIN1Q13671 783 aa17.21■□□□□ 0.35
CLN3-250ENST00000636839 MOGAT2Q3SYC2 334 aa17.21■□□□□ 0.35
CLN3-250ENST00000636839 RTN4RL2Q86UN3 420 aa17.21■□□□□ 0.35
CLN3-250ENST00000636839 BATF2Q8N1L9 274 aa17.21■□□□□ 0.35
CLN3-250ENST00000636839 S100A16Q96FQ6 103 aaKnown RBP17.21■□□□□ 0.35
CLN3-250ENST00000636839 ATG5Q9H1Y0 275 aa17.21■□□□□ 0.35
CLN3-250ENST00000636839 OCEL1Q9H607 264 aa17.21■□□□□ 0.35
CLN3-250ENST00000636839 IGHV3-64DA0A0J9YX35 117 aa17.2■□□□□ 0.34
CLN3-250ENST00000636839 CSF3P09919 207 aa17.2■□□□□ 0.34
CLN3-250ENST00000636839 PRKACBP22694 351 aa17.2■□□□□ 0.34
CLN3-250ENST00000636839 RBP2P50120 134 aa17.2■□□□□ 0.34
CLN3-250ENST00000636839 KRT74Q7RTS7 529 aa17.2■□□□□ 0.34
CLN3-250ENST00000636839 CDH26Q8IXH8 852 aa17.2■□□□□ 0.34
CLN3-250ENST00000636839 ZDHHC23Q8IYP9 409 aa17.2■□□□□ 0.34
CLN3-250ENST00000636839 PIAS4Q8N2W9 510 aaPredicted RBP17.2■□□□□ 0.34
CLN3-250ENST00000636839 ITPKCQ96DU7 683 aa17.2■□□□□ 0.34
CLN3-250ENST00000636839 CMTM3Q96MX0 182 aa17.2■□□□□ 0.34
CLN3-250ENST00000636839 BCL2L14Q9BZR8 327 aa17.2■□□□□ 0.34
CLN3-250ENST00000636839 SLC7A11Q9UPY5 501 aa17.2■□□□□ 0.34
CLN3-250ENST00000636839 LINC00854A0A1B0GVQ3 168 aa17.2■□□□□ 0.34
CLN3-250ENST00000636839 ANKRD30BLA7E2S9 258 aa17.2■□□□□ 0.34
CLN3-250ENST00000636839 C3orf80F5H4A9 247 aa17.2■□□□□ 0.34
CLN3-250ENST00000636839 H0YL77 283 aa17.2■□□□□ 0.34
CLN3-250ENST00000636839 LANCL1O43813 399 aa17.2■□□□□ 0.34
CLN3-250ENST00000636839 BPNT1O95861 308 aa17.2■□□□□ 0.34
CLN3-250ENST00000636839 TMEM225BP0DP42 221 aa17.2■□□□□ 0.34
CLN3-250ENST00000636839 NAT2P11245 290 aa17.2■□□□□ 0.34
CLN3-250ENST00000636839 PTH2RP49190 550 aa17.2■□□□□ 0.34
CLN3-250ENST00000636839 FUT6P51993 359 aa17.2■□□□□ 0.34
CLN3-250ENST00000636839 CEACAM21Q3KPI0 293 aa17.2■□□□□ 0.34
CLN3-250ENST00000636839 LYSMD2Q8IV50 215 aa17.2■□□□□ 0.34
CLN3-250ENST00000636839 Q8N402 240 aa17.2■□□□□ 0.34
CLN3-250ENST00000636839 IGKV1-12A0A0C4DH73 117 aa17.19■□□□□ 0.34
CLN3-250ENST00000636839 PQLC2LA1A4F0 135 aa17.19■□□□□ 0.34
CLN3-250ENST00000636839 ZNF732B4DXR9 585 aa17.19■□□□□ 0.34
CLN3-250ENST00000636839 ZG16O60844 167 aa17.19■□□□□ 0.34
CLN3-250ENST00000636839 IGKV1D-12P01611 117 aa17.19■□□□□ 0.34
CLN3-250ENST00000636839 HLA-DQB1P01920 261 aa17.19■□□□□ 0.34
CLN3-250ENST00000636839 SCAND1P57086 179 aa17.19■□□□□ 0.34
CLN3-250ENST00000636839 BSPH1Q075Z2 132 aa17.19■□□□□ 0.34
CLN3-250ENST00000636839 C3orf36Q3SXR2 165 aa17.19■□□□□ 0.34
CLN3-250ENST00000636839 GALNT11Q8NCW6 608 aa17.19■□□□□ 0.34
CLN3-250ENST00000636839 RAB40AQ8WXH6 277 aa17.19■□□□□ 0.34
CLN3-250ENST00000636839 OR5P3Q8WZ94 311 aa17.19■□□□□ 0.34
CLN3-250ENST00000636839 NICN1Q9BSH3 213 aa17.19■□□□□ 0.34
CLN3-250ENST00000636839 ELL3Q9HB65 397 aaPredicted RBP17.19■□□□□ 0.34
CLN3-250ENST00000636839 WIPF3A6NGB9 483 aa17.18■□□□□ 0.34
CLN3-250ENST00000636839 TMEM14DPA8MWL7 114 aa17.18■□□□□ 0.34
CLN3-250ENST00000636839 IL7P13232 177 aa17.18■□□□□ 0.34
CLN3-250ENST00000636839 NKX6-1P78426 367 aaPredicted RBP17.18■□□□□ 0.34
CLN3-250ENST00000636839 FBXL19-AS1Q494R0 122 aa17.18■□□□□ 0.34
CLN3-250ENST00000636839 TMEM69Q5SWH9 247 aa17.18■□□□□ 0.34
CLN3-250ENST00000636839 LHFPL2Q6ZUX7 228 aa17.18■□□□□ 0.34
CLN3-250ENST00000636839 PNLDC1Q8NA58 520 aaKnown RBP17.18■□□□□ 0.34
CLN3-250ENST00000636839 ACBD4Q8NC06 268 aa17.18■□□□□ 0.34
CLN3-250ENST00000636839 RNASE6Q93091 150 aaKnown RBP17.18■□□□□ 0.34
CLN3-250ENST00000636839 RNF170Q96K19 258 aa17.18■□□□□ 0.34
CLN3-250ENST00000636839 ZMAT3Q9HA38 289 aaKnown RBP17.18■□□□□ 0.34
CLN3-250ENST00000636839 NEK6Q9HC98 313 aa17.18■□□□□ 0.34
CLN3-250ENST00000636839 DUSP13Q9UII6 198 aa17.18■□□□□ 0.34
CLN3-250ENST00000636839 PURGQ9UJV8 347 aaKnown RBP17.18■□□□□ 0.34
CLN3-250ENST00000636839 A0A1B0GUH1 482 aa17.18■□□□□ 0.34
CLN3-250ENST00000636839 ABCD4O14678 606 aa17.18■□□□□ 0.34
CLN3-250ENST00000636839 CRTAPO75718 401 aaPredicted RBP17.18■□□□□ 0.34
CLN3-250ENST00000636839 MPIG6BO95866 241 aa17.18■□□□□ 0.34
CLN3-250ENST00000636839 SELEP16581 610 aa17.18■□□□□ 0.34
CLN3-250ENST00000636839 SERPINA2P20848 420 aa17.18■□□□□ 0.34
CLN3-250ENST00000636839 RBMXP38159 391 aaKnown RBP17.18■□□□□ 0.34
CLN3-250ENST00000636839 DGCR2P98153 550 aa17.18■□□□□ 0.34
CLN3-250ENST00000636839 FTMTQ8N4E7 242 aa17.18■□□□□ 0.34
CLN3-250ENST00000636839 GDPD1Q8N9F7 314 aa17.18■□□□□ 0.34
CLN3-250ENST00000636839 GTF3AQ92664 365 aaKnown RBP17.18■□□□□ 0.34
CLN3-250ENST00000636839 MOV10Q9HCE1 1003 aaKnown RBP17.18■□□□□ 0.34
CLN3-250ENST00000636839 MSL2Q9HCI7 577 aa17.18■□□□□ 0.34
CLN3-250ENST00000636839 ELF5Q9UKW6 265 aaPredicted RBP17.18■□□□□ 0.34
CLN3-250ENST00000636839 A0A0A6YYD4 124 aa17.17■□□□□ 0.34
CLN3-250ENST00000636839 A0A1W2PQ09 198 aa17.17■□□□□ 0.34
CLN3-250ENST00000636839 IQCF6A8MYZ5 107 aa17.17■□□□□ 0.34
CLN3-250ENST00000636839 ATP1B3P54709 279 aa17.17■□□□□ 0.34
CLN3-250ENST00000636839 PDZK1IP1Q13113 114 aa17.17■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms