RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 CELA2AP08217 269 aa11.18□□□□□ -0.62
LINC00540-203ENST00000631321 FAHP16930 419 aa11.18□□□□□ -0.62
LINC00540-203ENST00000631321 PI3P19957 117 aa11.18□□□□□ -0.62
LINC00540-203ENST00000631321 CPT2P23786 658 aa11.18□□□□□ -0.62
LINC00540-203ENST00000631321 ECI1P42126 302 aa11.18□□□□□ -0.62
LINC00540-203ENST00000631321 DEFA5Q01523 94 aa11.18□□□□□ -0.62
LINC00540-203ENST00000631321 IL11RAQ14626 422 aa11.18□□□□□ -0.62
LINC00540-203ENST00000631321 EXT1Q16394 746 aa11.18□□□□□ -0.62
LINC00540-203ENST00000631321 PLEKHN1Q494U1 663 aaPredicted RBP11.18□□□□□ -0.62
LINC00540-203ENST00000631321 DRAM2Q6UX65 266 aa11.18□□□□□ -0.62
LINC00540-203ENST00000631321 OR5D18Q8NGL1 313 aa11.18□□□□□ -0.62
LINC00540-203ENST00000631321 RNF141Q8WVD5 230 aa11.18□□□□□ -0.62
LINC00540-203ENST00000631321 NECAB3Q96P71 396 aaPredicted RBP11.18□□□□□ -0.62
LINC00540-203ENST00000631321 NKX6-2Q9C056 277 aaPredicted RBP11.18□□□□□ -0.62
LINC00540-203ENST00000631321 EHFQ9NZC4 300 aa11.18□□□□□ -0.62
LINC00540-203ENST00000631321 PRELID1Q9Y255 219 aa11.18□□□□□ -0.62
LINC00540-203ENST00000631321 SDK1Q7Z5N4 2213 aa11.18□□□□□ -0.62
LINC00540-203ENST00000631321 SPEGQ15772 3267 aa11.18□□□□□ -0.62
LINC00540-203ENST00000631321 MSGN1A6NI15 193 aa11.18□□□□□ -0.62
LINC00540-203ENST00000631321 ABCD4O14678 606 aa11.18□□□□□ -0.62
LINC00540-203ENST00000631321 SIGLEC5O15389 551 aa11.18□□□□□ -0.62
LINC00540-203ENST00000631321 UMODP07911 640 aa11.18□□□□□ -0.62
LINC00540-203ENST00000631321 FAM157CP0CG43 387 aa11.18□□□□□ -0.62
LINC00540-203ENST00000631321 FCGR2AP12318 317 aa11.18□□□□□ -0.62
LINC00540-203ENST00000631321 GLRA1P23415 457 aa11.18□□□□□ -0.62
LINC00540-203ENST00000631321 SIGLEC14Q08ET2 396 aa11.18□□□□□ -0.62
LINC00540-203ENST00000631321 AIMP2Q13155 320 aaKnown RBP11.18□□□□□ -0.62
LINC00540-203ENST00000631321 ZIC4Q8N9L1 334 aa11.18□□□□□ -0.62
LINC00540-203ENST00000631321 M1APQ8TC57 530 aa11.18□□□□□ -0.62
LINC00540-203ENST00000631321 PAQR8Q8TEZ7 354 aa11.18□□□□□ -0.62
LINC00540-203ENST00000631321 OR10C1Q96KK4 312 aa11.18□□□□□ -0.62
LINC00540-203ENST00000631321 OR5AC2Q9NZP5 309 aa11.18□□□□□ -0.62
LINC00540-203ENST00000631321 PIGLQ9Y2B2 252 aa11.18□□□□□ -0.62
LINC00540-203ENST00000631321 FAM74A7A6NL05 159 aa11.17□□□□□ -0.62
LINC00540-203ENST00000631321 DHRS7CA6NNS2 312 aa11.17□□□□□ -0.62
LINC00540-203ENST00000631321 NPIPA2E9PIF3 369 aa11.17□□□□□ -0.62
LINC00540-203ENST00000631321 NPIPA3F8WFD2 350 aa11.17□□□□□ -0.62
LINC00540-203ENST00000631321 M0R135 149 aa11.17□□□□□ -0.62
LINC00540-203ENST00000631321 SDCBPO00560 298 aaPredicted RBP11.17□□□□□ -0.62
LINC00540-203ENST00000631321 MTRF1O75570 445 aaKnown RBP11.17□□□□□ -0.62
LINC00540-203ENST00000631321 CSTBP04080 98 aaKnown RBP11.17□□□□□ -0.62
LINC00540-203ENST00000631321 CCL3P10147 92 aa11.17□□□□□ -0.62
LINC00540-203ENST00000631321 COX6A1P12074 109 aa11.17□□□□□ -0.62
LINC00540-203ENST00000631321 ZNF169Q14929 603 aaPredicted RBP11.17□□□□□ -0.62
LINC00540-203ENST00000631321 FAM74A3Q4VXF1 159 aa11.17□□□□□ -0.62
LINC00540-203ENST00000631321 PABPC1L2AQ5JQF8 200 aa11.17□□□□□ -0.62
LINC00540-203ENST00000631321 NKAPLQ5M9Q1 402 aa11.17□□□□□ -0.62
LINC00540-203ENST00000631321 C10orf91Q5T1B1 145 aa11.17□□□□□ -0.62
LINC00540-203ENST00000631321 C20orf196Q8IYI0 205 aa11.17□□□□□ -0.62
LINC00540-203ENST00000631321 CLRN3Q8NCR9 226 aa11.17□□□□□ -0.62
LINC00540-203ENST00000631321 BHLHE23Q8NDY6 225 aa11.17□□□□□ -0.62
LINC00540-203ENST00000631321 NPRL2Q8WTW4 380 aa11.17□□□□□ -0.62
LINC00540-203ENST00000631321 ZNF799Q96GE5 643 aa11.17□□□□□ -0.62
LINC00540-203ENST00000631321 UCN2Q96RP3 112 aa11.17□□□□□ -0.62
LINC00540-203ENST00000631321 PRR13Q9NZ81 148 aa11.17□□□□□ -0.62
LINC00540-203ENST00000631321 PMS2P1A4D2B8 440 aa11.17□□□□□ -0.62
LINC00540-203ENST00000631321 ATP6V1G2-DDX39BF2Z307 99 aa11.17□□□□□ -0.62
LINC00540-203ENST00000631321 HTR3BO95264 441 aa11.17□□□□□ -0.62
LINC00540-203ENST00000631321 PET100P0DJ07 73 aa11.17□□□□□ -0.62
LINC00540-203ENST00000631321 SERPINA2P20848 420 aa11.17□□□□□ -0.62
LINC00540-203ENST00000631321 MRPS34P82930 218 aaKnown RBP11.17□□□□□ -0.62
LINC00540-203ENST00000631321 CHRFAM7AQ494W8 412 aa11.17□□□□□ -0.62
LINC00540-203ENST00000631321 CCDC157Q569K6 752 aa11.17□□□□□ -0.62
LINC00540-203ENST00000631321 PDSS1Q5T2R2 415 aa11.17□□□□□ -0.62
LINC00540-203ENST00000631321 FAM27BQ5VT28 67 aa11.17□□□□□ -0.62
LINC00540-203ENST00000631321 OR5T2Q8NGG2 359 aa11.17□□□□□ -0.62
LINC00540-203ENST00000631321 ARL11Q969Q4 196 aa11.17□□□□□ -0.62
LINC00540-203ENST00000631321 SPTSSAQ969W0 71 aa11.17□□□□□ -0.62
LINC00540-203ENST00000631321 Q96M66 194 aa11.17□□□□□ -0.62
LINC00540-203ENST00000631321 GNRHR2Q96P88 292 aa11.17□□□□□ -0.62
LINC00540-203ENST00000631321 SLC5A7Q9GZV3 580 aa11.17□□□□□ -0.62
LINC00540-203ENST00000631321 DECR2Q9NUI1 292 aa11.17□□□□□ -0.62
LINC00540-203ENST00000631321 CRYGSP22914 178 aa11.16□□□□□ -0.62
LINC00540-203ENST00000631321 DMRTC1Q5HYR2 192 aa11.16□□□□□ -0.62
LINC00540-203ENST00000631321 RAET1LQ5VY80 246 aa11.16□□□□□ -0.62
LINC00540-203ENST00000631321 SULF2Q8IWU5 870 aa11.16□□□□□ -0.62
LINC00540-203ENST00000631321 MAML2Q8IZL2 1156 aaPredicted RBP11.16□□□□□ -0.62
LINC00540-203ENST00000631321 MAFIPQ8WZ33 124 aa11.16□□□□□ -0.62
LINC00540-203ENST00000631321 NARS2Q96I59 477 aaKnown RBP11.16□□□□□ -0.62
LINC00540-203ENST00000631321 S100A13Q99584 98 aa11.16□□□□□ -0.62
LINC00540-203ENST00000631321 PIGQQ9BRB3 760 aa11.16□□□□□ -0.62
LINC00540-203ENST00000631321 METTL8Q9H825 291 aaKnown RBP11.16□□□□□ -0.62
LINC00540-203ENST00000631321 MMP26Q9NRE1 261 aa11.16□□□□□ -0.62
LINC00540-203ENST00000631321 PURGQ9UJV8 347 aaKnown RBP11.16□□□□□ -0.62
LINC00540-203ENST00000631321 MCTS1Q9ULC4 181 aaKnown RBP11.16□□□□□ -0.62
LINC00540-203ENST00000631321 IGHV3-15A0A0B4J1V0 119 aa11.16□□□□□ -0.62
LINC00540-203ENST00000631321 DNPH1O43598 174 aa11.16□□□□□ -0.62
LINC00540-203ENST00000631321 ACTL6AO96019 429 aa11.16□□□□□ -0.62
LINC00540-203ENST00000631321 PTGER4P35408 488 aa11.16□□□□□ -0.62
LINC00540-203ENST00000631321 SSR4P51571 173 aa11.16□□□□□ -0.62
LINC00540-203ENST00000631321 RAC1P63000 192 aa11.16□□□□□ -0.62
LINC00540-203ENST00000631321 RAB32Q13637 225 aa11.16□□□□□ -0.62
LINC00540-203ENST00000631321 MST1LQ2TV78 715 aa11.16□□□□□ -0.62
LINC00540-203ENST00000631321 HLA-BQ31612 363 aa11.16□□□□□ -0.62
LINC00540-203ENST00000631321 ZNF585AQ6P3V2 769 aa11.16□□□□□ -0.62
LINC00540-203ENST00000631321 IL34Q6ZMJ4 242 aa11.16□□□□□ -0.62
LINC00540-203ENST00000631321 LRRC18Q8N456 261 aa11.16□□□□□ -0.62
LINC00540-203ENST00000631321 TMED6Q8WW62 240 aa11.16□□□□□ -0.62
LINC00540-203ENST00000631321 SPSB1Q96BD6 273 aa11.16□□□□□ -0.62
LINC00540-203ENST00000631321 SGK3Q96BR1 496 aa11.16□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms