RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 GAL3ST1Q99999 423 aa15.24■□□□□ 0.03
CLN3-239ENST00000628023 GPR173Q9NS66 373 aa15.24■□□□□ 0.03
CLN3-239ENST00000628023 C1orf123Q9NWV4 160 aa15.24■□□□□ 0.03
CLN3-239ENST00000628023 BABAM2Q9NXR7 383 aa15.24■□□□□ 0.03
CLN3-239ENST00000628023 CDC42EP3Q9UKI2 254 aa15.24■□□□□ 0.03
CLN3-239ENST00000628023 NPTNQ9Y639 398 aa15.24■□□□□ 0.03
CLN3-239ENST00000628023 FBN1P35555 2871 aaKnown RBP15.23■□□□□ 0.03
CLN3-239ENST00000628023 A0A096LNT2 108 aa15.23■□□□□ 0.03
CLN3-239ENST00000628023 ANKRD61A6NGH8 418 aa15.23■□□□□ 0.03
CLN3-239ENST00000628023 TMEM210A6NLX4 147 aa15.23■□□□□ 0.03
CLN3-239ENST00000628023 TMEM178BH3BS89 294 aa15.23■□□□□ 0.03
CLN3-239ENST00000628023 RGS10O43665 173 aa15.23■□□□□ 0.03
CLN3-239ENST00000628023 GATBO75879 557 aaKnown RBP15.23■□□□□ 0.03
CLN3-239ENST00000628023 RPSAP08865 295 aaKnown RBP15.23■□□□□ 0.03
CLN3-239ENST00000628023 EEF1B2P24534 225 aaKnown RBP15.23■□□□□ 0.03
CLN3-239ENST00000628023 RBMXP38159 391 aaKnown RBP15.23■□□□□ 0.03
CLN3-239ENST00000628023 GPM6AP51674 278 aa15.23■□□□□ 0.03
CLN3-239ENST00000628023 BTG1P62324 171 aa15.23■□□□□ 0.03
CLN3-239ENST00000628023 CDK5R1Q15078 307 aa15.23■□□□□ 0.03
CLN3-239ENST00000628023 ZNF181Q2M3W8 571 aa15.23■□□□□ 0.03
CLN3-239ENST00000628023 CEACAM21Q3KPI0 293 aa15.23■□□□□ 0.03
CLN3-239ENST00000628023 DMRTC1Q5HYR2 192 aa15.23■□□□□ 0.03
CLN3-239ENST00000628023 RBM48Q5RL73 367 aaKnown RBP15.23■□□□□ 0.03
CLN3-239ENST00000628023 RPL22L1Q6P5R6 122 aaKnown RBP15.23■□□□□ 0.03
CLN3-239ENST00000628023 OR1M1Q8NGA1 313 aa15.23■□□□□ 0.03
CLN3-239ENST00000628023 Q8TCH9 128 aa15.23■□□□□ 0.03
CLN3-239ENST00000628023 TSEN15Q8WW01 171 aaKnown RBP15.23■□□□□ 0.03
CLN3-239ENST00000628023 PDCD1LG2Q9BQ51 273 aa15.23■□□□□ 0.03
CLN3-239ENST00000628023 MND1Q9BWT6 205 aa15.23■□□□□ 0.03
CLN3-239ENST00000628023 CCDC90BQ9GZT6 254 aa15.23■□□□□ 0.03
CLN3-239ENST00000628023 MXRA5Q9NR99 2828 aa15.23■□□□□ 0.03
CLN3-239ENST00000628023 OR5B21A6NL26 309 aa15.22■□□□□ 0.03
CLN3-239ENST00000628023 LMX1BO60663 402 aa15.22■□□□□ 0.03
CLN3-239ENST00000628023 ZFPL1O95159 310 aa15.22■□□□□ 0.03
CLN3-239ENST00000628023 PTBP3O95758 552 aaKnown RBP15.22■□□□□ 0.03
CLN3-239ENST00000628023 SERPINA3P01011 423 aa15.22■□□□□ 0.03
CLN3-239ENST00000628023 CRHBPP24387 322 aa15.22■□□□□ 0.03
CLN3-239ENST00000628023 THBS2P35442 1172 aa15.22■□□□□ 0.03
CLN3-239ENST00000628023 PMELP40967 661 aa15.22■□□□□ 0.03
CLN3-239ENST00000628023 WNT4P56705 351 aa15.22■□□□□ 0.03
CLN3-239ENST00000628023 TAS2R43P59537 309 aa15.22■□□□□ 0.03
CLN3-239ENST00000628023 GNG3P63215 75 aa15.22■□□□□ 0.03
CLN3-239ENST00000628023 SLC35A2P78381 396 aa15.22■□□□□ 0.03
CLN3-239ENST00000628023 ZNF154Q13106 437 aa15.22■□□□□ 0.03
CLN3-239ENST00000628023 CYB5R2Q6BCY4 276 aa15.22■□□□□ 0.03
CLN3-239ENST00000628023 XAF1Q6GPH4 301 aa15.22■□□□□ 0.03
CLN3-239ENST00000628023 Q6ZSR3 168 aa15.22■□□□□ 0.03
CLN3-239ENST00000628023 WDR86Q86TI4 376 aa15.22■□□□□ 0.03
CLN3-239ENST00000628023 BOLLQ8N9W6 283 aaKnown RBP15.22■□□□□ 0.03
CLN3-239ENST00000628023 CLDND2Q8NHS1 167 aa15.22■□□□□ 0.03
CLN3-239ENST00000628023 TMEM158Q8WZ71 300 aa15.22■□□□□ 0.03
CLN3-239ENST00000628023 C10orf35Q96D05 121 aa15.22■□□□□ 0.03
CLN3-239ENST00000628023 PAK1IP1Q9NWT1 392 aaPredicted RBP15.22■□□□□ 0.03
CLN3-239ENST00000628023 UBAP1Q9NZ09 502 aa15.22■□□□□ 0.03
CLN3-239ENST00000628023 ERVK-18Q9QC07 812 aa15.22■□□□□ 0.03
CLN3-239ENST00000628023 RNF7Q9UBF6 113 aa15.22■□□□□ 0.03
CLN3-239ENST00000628023 PCDHGB5Q9Y5G0 923 aa15.22■□□□□ 0.03
CLN3-239ENST00000628023 DNHD1Q96M86 4753 aa15.22■□□□□ 0.03
CLN3-239ENST00000628023 ZNF732B4DXR9 585 aa15.21■□□□□ 0.03
CLN3-239ENST00000628023 WNT9BO14905 357 aa15.21■□□□□ 0.03
CLN3-239ENST00000628023 DENRO43583 198 aaKnown RBP15.21■□□□□ 0.03
CLN3-239ENST00000628023 ZNF205O95201 554 aa15.21■□□□□ 0.03
CLN3-239ENST00000628023 OCM2P0CE71 109 aa15.21■□□□□ 0.03
CLN3-239ENST00000628023 OCMP0CE72 109 aaPredicted RBP15.21■□□□□ 0.03
CLN3-239ENST00000628023 FAM157CP0CG43 387 aa15.21■□□□□ 0.03
CLN3-239ENST00000628023 TMEM42Q69YG0 159 aa15.21■□□□□ 0.03
CLN3-239ENST00000628023 ZNF826PQ6ZT77 177 aa15.21■□□□□ 0.03
CLN3-239ENST00000628023 SPICQ8N5J4 248 aa15.21■□□□□ 0.03
CLN3-239ENST00000628023 NANOGP1Q8N7R0 232 aa15.21■□□□□ 0.03
CLN3-239ENST00000628023 ZFP41Q8N8Y5 198 aa15.21■□□□□ 0.03
CLN3-239ENST00000628023 OR5A2Q8NGI9 324 aa15.21■□□□□ 0.03
CLN3-239ENST00000628023 OR51A4Q8NGJ6 313 aa15.21■□□□□ 0.03
CLN3-239ENST00000628023 OR10AC1Q8NH08 325 aa15.21■□□□□ 0.03
CLN3-239ENST00000628023 SGCDQ92629 289 aa15.21■□□□□ 0.03
CLN3-239ENST00000628023 SMIM19Q96E16 107 aa15.21■□□□□ 0.03
CLN3-239ENST00000628023 BEX2Q9BXY8 128 aa15.21■□□□□ 0.03
CLN3-239ENST00000628023 CHST5Q9GZS9 411 aa15.21■□□□□ 0.03
CLN3-239ENST00000628023 TMEM160Q9NX00 188 aa15.21■□□□□ 0.03
CLN3-239ENST00000628023 LPAR3Q9UBY5 353 aa15.21■□□□□ 0.03
CLN3-239ENST00000628023 SLC7A11Q9UPY5 501 aa15.21■□□□□ 0.03
CLN3-239ENST00000628023 DHDHQ9UQ10 334 aa15.21■□□□□ 0.03
CLN3-239ENST00000628023 FBN3Q75N90 2809 aa15.21■□□□□ 0.02
CLN3-239ENST00000628023 PNMA8CA0A1B0GUJ8 204 aa15.2■□□□□ 0.02
CLN3-239ENST00000628023 CDIPTO14735 213 aa15.2■□□□□ 0.02
CLN3-239ENST00000628023 LALBAP00709 142 aa15.2■□□□□ 0.02
CLN3-239ENST00000628023 IGHV2-70P01814 119 aa15.2■□□□□ 0.02
CLN3-239ENST00000628023 MDH2P40926 338 aaKnown RBP15.2■□□□□ 0.02
CLN3-239ENST00000628023 GZMKP49863 264 aa15.2■□□□□ 0.02
CLN3-239ENST00000628023 ZMYND11Q15326 602 aa15.2■□□□□ 0.02
CLN3-239ENST00000628023 CNN3Q15417 329 aaKnown RBP15.2■□□□□ 0.02
CLN3-239ENST00000628023 KRT74Q7RTS7 529 aa15.2■□□□□ 0.02
CLN3-239ENST00000628023 MUC20Q8N307 709 aaPredicted RBP15.2■□□□□ 0.02
CLN3-239ENST00000628023 TRMT10AQ8TBZ6 339 aaKnown RBP15.2■□□□□ 0.02
CLN3-239ENST00000628023 NPRL2Q8WTW4 380 aa15.2■□□□□ 0.02
CLN3-239ENST00000628023 PP6455Q8WZ26 134 aa15.2■□□□□ 0.02
CLN3-239ENST00000628023 RPL3LQ92901 407 aaKnown RBP15.2■□□□□ 0.02
CLN3-239ENST00000628023 FGGYQ96C11 551 aa15.2■□□□□ 0.02
CLN3-239ENST00000628023 RAB39BQ96DA2 213 aa15.2■□□□□ 0.02
CLN3-239ENST00000628023 TECTBQ96PL2 329 aa15.2■□□□□ 0.02
CLN3-239ENST00000628023 CDCA4Q9BXL8 241 aa15.2■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 56 ms