RNA–Protein interactions for RNA: ENST00000612417.4

CDH1-213, Transcript of cadherin 1, humanhuman

TSL 5 BASIC

Gene CDH1, Length 2,068 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH1-213ENST00000612417 ZNF133P52736 654 aaPredicted RBP12.9□□□□□ -0.34
CDH1-213ENST00000612417 POLR2GP62487 172 aaKnown RBP eCLIP12.9□□□□□ -0.34
CDH1-213ENST00000612417 TMPPEQ6ZT21 453 aa12.9□□□□□ -0.34
CDH1-213ENST00000612417 LINC00518Q8N0U6 118 aa12.9□□□□□ -0.34
CDH1-213ENST00000612417 GTPBP8Q8N3Z3 284 aaPredicted RBP12.9□□□□□ -0.34
CDH1-213ENST00000612417 SREK1IP1Q8N9Q2 155 aaPredicted RBP12.9□□□□□ -0.34
CDH1-213ENST00000612417 OR56B1Q8NGI3 324 aa12.9□□□□□ -0.34
CDH1-213ENST00000612417 OR14K1Q8NGZ2 314 aa12.9□□□□□ -0.34
CDH1-213ENST00000612417 TMEM41AQ96HV5 264 aa12.9□□□□□ -0.34
CDH1-213ENST00000612417 FAM71F1Q96KD3 344 aaPredicted RBP12.9□□□□□ -0.34
CDH1-213ENST00000612417 GHRLQ9UBU3 117 aa12.9□□□□□ -0.34
CDH1-213ENST00000612417 DKKL1Q9UK85 242 aa12.9□□□□□ -0.34
CDH1-213ENST00000612417 MYO7BQ6PIF6 2116 aa12.89□□□□□ -0.35
CDH1-213ENST00000612417 TRBV6-7A0A0A0MS04 114 aa12.89□□□□□ -0.35
CDH1-213ENST00000612417 SMAD9O15198 467 aaKnown RBP12.89□□□□□ -0.35
CDH1-213ENST00000612417 SOCS1O15524 211 aa12.89□□□□□ -0.35
CDH1-213ENST00000612417 HCKP08631 526 aa12.89□□□□□ -0.35
CDH1-213ENST00000612417 PRF1P14222 555 aa12.89□□□□□ -0.35
CDH1-213ENST00000612417 LIFP15018 202 aa12.89□□□□□ -0.35
CDH1-213ENST00000612417 VAMP1P23763 118 aa12.89□□□□□ -0.35
CDH1-213ENST00000612417 ITGA3P26006 1051 aa12.89□□□□□ -0.35
CDH1-213ENST00000612417 CYB561P49447 251 aa12.89□□□□□ -0.35
CDH1-213ENST00000612417 LUMP51884 338 aaPredicted RBP12.89□□□□□ -0.35
CDH1-213ENST00000612417 TMEM50BP56557 158 aa12.89□□□□□ -0.35
CDH1-213ENST00000612417 TGIF1Q15583 401 aa12.89□□□□□ -0.35
CDH1-213ENST00000612417 LRRC37A5PQ49AS3 106 aa12.89□□□□□ -0.35
CDH1-213ENST00000612417 TMEM128Q5BJH2 165 aa12.89□□□□□ -0.35
CDH1-213ENST00000612417 DCAF10Q5QP82 559 aa12.89□□□□□ -0.35
CDH1-213ENST00000612417 C10orf128Q5T292 105 aa12.89□□□□□ -0.35
CDH1-213ENST00000612417 TFAP2EQ6VUC0 442 aa12.89□□□□□ -0.35
CDH1-213ENST00000612417 FOXL2NBQ6ZUU3 175 aa12.89□□□□□ -0.35
CDH1-213ENST00000612417 FAM57BQ71RH2 274 aa12.89□□□□□ -0.35
CDH1-213ENST00000612417 FAM89BQ8N5H3 189 aa12.89□□□□□ -0.35
CDH1-213ENST00000612417 ZNF283Q8N7M2 679 aa12.89□□□□□ -0.35
CDH1-213ENST00000612417 RELL2Q8NC24 303 aaPredicted RBP12.89□□□□□ -0.35
CDH1-213ENST00000612417 TMEM185AQ8NFB2 350 aa12.89□□□□□ -0.35
CDH1-213ENST00000612417 OR10K1Q8NGX5 313 aa12.89□□□□□ -0.35
CDH1-213ENST00000612417 THAP6Q8TBB0 222 aa12.89□□□□□ -0.35
CDH1-213ENST00000612417 MARCH1Q8TCQ1 289 aa12.89□□□□□ -0.35
CDH1-213ENST00000612417 INTS12Q96CB8 462 aaKnown RBP12.89□□□□□ -0.35
CDH1-213ENST00000612417 MRPS24Q96EL2 167 aaKnown RBP12.89□□□□□ -0.35
CDH1-213ENST00000612417 NMES1Q9C002 83 aa12.89□□□□□ -0.35
CDH1-213ENST00000612417 FAM117AQ9C073 453 aa12.89□□□□□ -0.35
CDH1-213ENST00000612417 PTPRBP23467 1997 aa12.89□□□□□ -0.35
CDH1-213ENST00000612417 IGKV1-9A0A0C4DH69 117 aa12.89□□□□□ -0.35
CDH1-213ENST00000612417 LGALS8O00214 317 aa12.89□□□□□ -0.35
CDH1-213ENST00000612417 CRHP06850 196 aa12.89□□□□□ -0.35
CDH1-213ENST00000612417 AKR1C4P17516 323 aa12.89□□□□□ -0.35
CDH1-213ENST00000612417 ECH1Q13011 328 aa12.89□□□□□ -0.35
CDH1-213ENST00000612417 ABHD17BQ5VST6 288 aa12.89□□□□□ -0.35
CDH1-213ENST00000612417 Q6ZSR3 168 aa12.89□□□□□ -0.35
CDH1-213ENST00000612417 ADAMTS17Q8TE56 1095 aa12.89□□□□□ -0.35
CDH1-213ENST00000612417 PSMF1Q92530 271 aa12.89□□□□□ -0.35
CDH1-213ENST00000612417 IP6K3Q96PC2 410 aa12.89□□□□□ -0.35
CDH1-213ENST00000612417 URM1Q9BTM9 101 aaKnown RBP12.89□□□□□ -0.35
CDH1-213ENST00000612417 ZNF416Q9BWM5 594 aa12.89□□□□□ -0.35
CDH1-213ENST00000612417 LDAHQ9H6V9 325 aa12.89□□□□□ -0.35
CDH1-213ENST00000612417 GPR132Q9UNW8 380 aa12.89□□□□□ -0.35
CDH1-213ENST00000612417 A0A0B4J2A0 478 aa12.88□□□□□ -0.35
CDH1-213ENST00000612417 A0A0U1RQV5 110 aa12.88□□□□□ -0.35
CDH1-213ENST00000612417 KLK2P20151 261 aa12.88□□□□□ -0.35
CDH1-213ENST00000612417 CD82P27701 267 aa12.88□□□□□ -0.35
CDH1-213ENST00000612417 STARP49675 285 aa12.88□□□□□ -0.35
CDH1-213ENST00000612417 NOVA1P51513 510 aaKnown RBP12.88□□□□□ -0.35
CDH1-213ENST00000612417 DSCR4P56555 118 aaPredicted RBP12.88□□□□□ -0.35
CDH1-213ENST00000612417 RAET1LQ5VY80 246 aa12.88□□□□□ -0.35
CDH1-213ENST00000612417 PEG10Q86TG7 708 aaKnown RBP12.88□□□□□ -0.35
CDH1-213ENST00000612417 INO80EQ8NBZ0 244 aaPredicted RBP12.88□□□□□ -0.35
CDH1-213ENST00000612417 CASTOR1Q8WTX7 329 aa12.88□□□□□ -0.35
CDH1-213ENST00000612417 NTNG2Q96CW9 530 aa12.88□□□□□ -0.35
CDH1-213ENST00000612417 NELFAQ9H3P2 528 aa12.88□□□□□ -0.35
CDH1-213ENST00000612417 RYDENQ9NUL5 291 aaKnown RBP12.88□□□□□ -0.35
CDH1-213ENST00000612417 SHPKQ9UHJ6 478 aa12.88□□□□□ -0.35
CDH1-213ENST00000612417 PTPRZ1P23471 2315 aaPredicted RBP12.88□□□□□ -0.35
CDH1-213ENST00000612417 A0A0G2JMM0 328 aa12.87□□□□□ -0.35
CDH1-213ENST00000612417 A0A1W2PPB8 328 aa12.87□□□□□ -0.35
CDH1-213ENST00000612417 A0A1W2PRS3 328 aa12.87□□□□□ -0.35
CDH1-213ENST00000612417 FOXI3A8MTJ6 420 aaPredicted RBP12.87□□□□□ -0.35
CDH1-213ENST00000612417 KIR3DP1A8MWS1 328 aa12.87□□□□□ -0.35
CDH1-213ENST00000612417 RAD51DO75771 328 aa12.87□□□□□ -0.35
CDH1-213ENST00000612417 CBR3O75828 277 aa12.87□□□□□ -0.35
CDH1-213ENST00000612417 ATF4P18848 351 aaPredicted RBP12.87□□□□□ -0.35
CDH1-213ENST00000612417 MSR1P21757 451 aa12.87□□□□□ -0.35
CDH1-213ENST00000612417 PSMB6P28072 239 aa12.87□□□□□ -0.35
CDH1-213ENST00000612417 CLDN17P56750 224 aa12.87□□□□□ -0.35
CDH1-213ENST00000612417 CYCSP99999 105 aaKnown RBP12.87□□□□□ -0.35
CDH1-213ENST00000612417 SCRN3Q0VDG4 424 aa12.87□□□□□ -0.35
CDH1-213ENST00000612417 PAN3Q58A45 887 aaKnown RBP12.87□□□□□ -0.35
CDH1-213ENST00000612417 CRIP3Q6Q6R5 217 aa12.87□□□□□ -0.35
CDH1-213ENST00000612417 STPG2Q8N412 459 aa12.87□□□□□ -0.35
CDH1-213ENST00000612417 PNLDC1Q8NA58 520 aaKnown RBP12.87□□□□□ -0.35
CDH1-213ENST00000612417 TMEM54Q969K7 222 aa12.87□□□□□ -0.35
CDH1-213ENST00000612417 ZNF75AQ96N20 296 aa12.87□□□□□ -0.35
CDH1-213ENST00000612417 ZNF471Q9BX82 626 aaPredicted RBP12.87□□□□□ -0.35
CDH1-213ENST00000612417 BANF2Q9H503 90 aa12.87□□□□□ -0.35
CDH1-213ENST00000612417 C5orf66Q9H5L9 145 aa12.87□□□□□ -0.35
CDH1-213ENST00000612417 CHMP1AQ9HD42 196 aaPredicted RBP12.87□□□□□ -0.35
CDH1-213ENST00000612417 MBD2Q9UBB5 411 aa12.87□□□□□ -0.35
CDH1-213ENST00000612417 FAM186AA6NE01 2351 aa12.87□□□□□ -0.35
CDH1-213ENST00000612417 PCP4L1A6NKN8 68 aa12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms