RNA–Protein interactions for RNA: ENST00000601341.5

VRK3-223, Transcript of vaccinia related kinase 3, human

APPRIS ALT2 TSL 2 BASIC

Gene VRK3, Length 1,777 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VRK3-223	ENST00000601341	CENPM	Q9NSP4	180 aa		10.2	□□□□□ -0.78
VRK3-223	ENST00000601341	PRSS50	Q9UI38	385 aa		10.2	□□□□□ -0.78
VRK3-223	ENST00000601341	ZNF835	Q9Y2P0	537 aa		10.2	□□□□□ -0.78
VRK3-223	ENST00000601341	PKD1L2	Q7Z442	2459 aa		10.2	□□□□□ -0.78
VRK3-223	ENST00000601341		F5H5P2	479 aa		10.19	□□□□□ -0.78
VRK3-223	ENST00000601341		L7N2F9	121 aa		10.19	□□□□□ -0.78
VRK3-223	ENST00000601341	CNOT4	O95628	575 aa	Known RBP	10.19	□□□□□ -0.78
VRK3-223	ENST00000601341	ACSM4	P0C7M7	580 aa		10.19	□□□□□ -0.78
VRK3-223	ENST00000601341	RRAS	P10301	218 aa		10.19	□□□□□ -0.78
VRK3-223	ENST00000601341	SEC61A1	P61619	476 aa	Known RBP	10.19	□□□□□ -0.78
VRK3-223	ENST00000601341	ARF1	P84077	181 aa	Known RBP	10.19	□□□□□ -0.78
VRK3-223	ENST00000601341	FGL1	Q08830	312 aa		10.19	□□□□□ -0.78
VRK3-223	ENST00000601341	PMPCA	Q10713	525 aa		10.19	□□□□□ -0.78
VRK3-223	ENST00000601341	NHLRC3	Q5JS37	347 aa		10.19	□□□□□ -0.78
VRK3-223	ENST00000601341	FAAP20	Q6NZ36	180 aa		10.19	□□□□□ -0.78
VRK3-223	ENST00000601341	FAHD2B	Q6P2I3	314 aa	Predicted RBP	10.19	□□□□□ -0.78
VRK3-223	ENST00000601341	TFAP2E	Q6VUC0	442 aa		10.19	□□□□□ -0.78
VRK3-223	ENST00000601341	SEM1	Q6ZVN7	128 aa		10.19	□□□□□ -0.78
VRK3-223	ENST00000601341	ZNF627	Q7L945	461 aa		10.19	□□□□□ -0.78
VRK3-223	ENST00000601341	DOLPP1	Q86YN1	238 aa		10.19	□□□□□ -0.78
VRK3-223	ENST00000601341	WBP1	Q96G27	269 aa		10.19	□□□□□ -0.78
VRK3-223	ENST00000601341	FAHD2A	Q96GK7	314 aa		10.19	□□□□□ -0.78
VRK3-223	ENST00000601341	PRRT1	Q99946	306 aa		10.19	□□□□□ -0.78
VRK3-223	ENST00000601341	SLC5A6	Q9Y289	635 aa		10.19	□□□□□ -0.78
VRK3-223	ENST00000601341	ZNF736	B4DX44	427 aa	Predicted RBP	10.19	□□□□□ -0.78
VRK3-223	ENST00000601341	ZNF878	C9JN71	531 aa		10.19	□□□□□ -0.78
VRK3-223	ENST00000601341	RER1	O15258	196 aa		10.19	□□□□□ -0.78
VRK3-223	ENST00000601341	B3GALNT1	O75752	331 aa		10.19	□□□□□ -0.78
VRK3-223	ENST00000601341	TOX	O94900	526 aa		10.19	□□□□□ -0.78
VRK3-223	ENST00000601341	TTR	P02766	147 aa		10.19	□□□□□ -0.78
VRK3-223	ENST00000601341	RLN1	P04808	185 aa		10.19	□□□□□ -0.78
VRK3-223	ENST00000601341	MPG	P29372	298 aa		10.19	□□□□□ -0.78
VRK3-223	ENST00000601341	S100A11	P31949	105 aa		10.19	□□□□□ -0.78
VRK3-223	ENST00000601341	PCBD1	P61457	104 aa		10.19	□□□□□ -0.78
VRK3-223	ENST00000601341	HIST1H3A	P68431	136 aa		10.19	□□□□□ -0.78
VRK3-223	ENST00000601341	QRFP	P83859	136 aa		10.19	□□□□□ -0.78
VRK3-223	ENST00000601341	FOXF2	Q12947	444 aa		10.19	□□□□□ -0.78
VRK3-223	ENST00000601341	TAF13	Q15543	124 aa		10.19	□□□□□ -0.78
VRK3-223	ENST00000601341	HIST2H3PS2	Q5TEC6	136 aa		10.19	□□□□□ -0.78
VRK3-223	ENST00000601341	C3P1	Q6ZMU1	363 aa		10.19	□□□□□ -0.78
VRK3-223	ENST00000601341	CFAP77	Q6ZQR2	320 aa		10.19	□□□□□ -0.78
VRK3-223	ENST00000601341	HIST2H3A	Q71DI3	136 aa		10.19	□□□□□ -0.78
VRK3-223	ENST00000601341	PGAP1	Q75T13	922 aa		10.19	□□□□□ -0.78
VRK3-223	ENST00000601341	SLC16A14	Q7RTX9	510 aa		10.19	□□□□□ -0.78
VRK3-223	ENST00000601341	OR2W3	Q7Z3T1	314 aa		10.19	□□□□□ -0.78
VRK3-223	ENST00000601341	JAGN1	Q8N5M9	183 aa		10.19	□□□□□ -0.78
VRK3-223	ENST00000601341	C17orf50	Q8WW18	174 aa		10.19	□□□□□ -0.78
VRK3-223	ENST00000601341	FBXO17	Q96EF6	278 aa		10.19	□□□□□ -0.78
VRK3-223	ENST00000601341	CACNA1C	Q13936	2221 aa		10.18	□□□□□ -0.78
VRK3-223	ENST00000601341	TMEM82	A0PJX8	343 aa		10.18	□□□□□ -0.78
VRK3-223	ENST00000601341	DISC1	C4P0D8	188 aa		10.18	□□□□□ -0.78
VRK3-223	ENST00000601341	RAB27B	O00194	218 aa		10.18	□□□□□ -0.78
VRK3-223	ENST00000601341	SYT7	O43581	403 aa		10.18	□□□□□ -0.78
VRK3-223	ENST00000601341	TNFSF13	O75888	250 aa		10.18	□□□□□ -0.78
VRK3-223	ENST00000601341	RPA2	P15927	270 aa		10.18	□□□□□ -0.78
VRK3-223	ENST00000601341	HLA-G	P17693	338 aa		10.18	□□□□□ -0.78
VRK3-223	ENST00000601341	CCL1	P22362	96 aa		10.18	□□□□□ -0.78
VRK3-223	ENST00000601341	CTSS	P25774	331 aa		10.18	□□□□□ -0.78
VRK3-223	ENST00000601341	CEACAM8	P31997	349 aa	Predicted RBP	10.18	□□□□□ -0.78
VRK3-223	ENST00000601341	GUCA2A	Q02747	115 aa		10.18	□□□□□ -0.78
VRK3-223	ENST00000601341	SCRN3	Q0VDG4	424 aa		10.18	□□□□□ -0.78
VRK3-223	ENST00000601341	C9orf135	Q5VTT2	229 aa		10.18	□□□□□ -0.78
VRK3-223	ENST00000601341	VWA1	Q6PCB0	445 aa		10.18	□□□□□ -0.78
VRK3-223	ENST00000601341	TMEM65	Q6PI78	240 aa		10.18	□□□□□ -0.78
VRK3-223	ENST00000601341		Q6ZT83	130 aa		10.18	□□□□□ -0.78
VRK3-223	ENST00000601341	ZNF584	Q8IVC4	421 aa		10.18	□□□□□ -0.78
VRK3-223	ENST00000601341	MUC20	Q8N307	709 aa	Predicted RBP	10.18	□□□□□ -0.78
VRK3-223	ENST00000601341	ZDHHC22	Q8N966	263 aa		10.18	□□□□□ -0.78
VRK3-223	ENST00000601341	CCDC54	Q8NEL0	328 aa		10.18	□□□□□ -0.78
VRK3-223	ENST00000601341	OR4D10	Q8NGI6	311 aa		10.18	□□□□□ -0.78
VRK3-223	ENST00000601341	OR10S1	Q8NGN2	331 aa		10.18	□□□□□ -0.78
VRK3-223	ENST00000601341	TNFAIP8L1	Q8WVP5	186 aa		10.18	□□□□□ -0.78
VRK3-223	ENST00000601341	PPP1R14A	Q96A00	147 aa		10.18	□□□□□ -0.78
VRK3-223	ENST00000601341	FAM46B	Q96A09	425 aa		10.18	□□□□□ -0.78
VRK3-223	ENST00000601341	ELMOD3	Q96FG2	381 aa		10.18	□□□□□ -0.78
VRK3-223	ENST00000601341	PBOV1	Q9GZY1	135 aa		10.18	□□□□□ -0.78
VRK3-223	ENST00000601341	PLSCR4	Q9NRQ2	329 aa		10.18	□□□□□ -0.78
VRK3-223	ENST00000601341	NUP50	Q9UKX7	468 aa		10.18	□□□□□ -0.78
VRK3-223	ENST00000601341	PLEKHA6	Q9Y2H5	1048 aa		10.18	□□□□□ -0.78
VRK3-223	ENST00000601341	TIMM10B	Q9Y5J6	103 aa		10.18	□□□□□ -0.78
VRK3-223	ENST00000601341	GTF3C1	Q12789	2109 aa		10.18	□□□□□ -0.78
VRK3-223	ENST00000601341	CD8A	P01732	235 aa		10.17	□□□□□ -0.78
VRK3-223	ENST00000601341	CHRM2	P08172	466 aa		10.17	□□□□□ -0.78
VRK3-223	ENST00000601341	OR4E1	P0C645	316 aa		10.17	□□□□□ -0.78
VRK3-223	ENST00000601341	ZNF735	P0CB33	412 aa		10.17	□□□□□ -0.78
VRK3-223	ENST00000601341	PPP3CB	P16298	524 aa		10.17	□□□□□ -0.78
VRK3-223	ENST00000601341	CXCL2	P19875	107 aa		10.17	□□□□□ -0.78
VRK3-223	ENST00000601341	RAB3A	P20336	220 aa		10.17	□□□□□ -0.78
VRK3-223	ENST00000601341	SSTR2	P30874	369 aa		10.17	□□□□□ -0.78
VRK3-223	ENST00000601341	FOXG1	P55316	489 aa	Predicted RBP	10.17	□□□□□ -0.78
VRK3-223	ENST00000601341	H2BFS	P57053	126 aa		10.17	□□□□□ -0.78
VRK3-223	ENST00000601341	TGFBR3	Q03167	851 aa		10.17	□□□□□ -0.78
VRK3-223	ENST00000601341	ZNF260	Q3ZCT1	412 aa		10.17	□□□□□ -0.78
VRK3-223	ENST00000601341	PCSK4	Q6UW60	755 aa		10.17	□□□□□ -0.78
VRK3-223	ENST00000601341	IDO2	Q6ZQW0	420 aa		10.17	□□□□□ -0.78
VRK3-223	ENST00000601341	SKA3	Q8IX90	412 aa		10.17	□□□□□ -0.78
VRK3-223	ENST00000601341	RPRML	Q8N4K4	120 aa		10.17	□□□□□ -0.78
VRK3-223	ENST00000601341	OR1M1	Q8NGA1	313 aa		10.17	□□□□□ -0.78
VRK3-223	ENST00000601341	OR51A2	Q8NGJ7	313 aa		10.17	□□□□□ -0.78
VRK3-223	ENST00000601341	STARD4	Q96DR4	205 aa		10.17	□□□□□ -0.78

Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms