RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 RNF144BQ7Z419 303 aa11.9□□□□□ -0.5
SHKBP1-217ENST00000598558 KLHL36Q8N4N3 616 aa11.9□□□□□ -0.5
SHKBP1-217ENST00000598558 SCCPDHQ8NBX0 429 aa11.9□□□□□ -0.5
SHKBP1-217ENST00000598558 OR5A2Q8NGI9 324 aa11.9□□□□□ -0.5
SHKBP1-217ENST00000598558 ITFG2Q969R8 447 aa11.9□□□□□ -0.5
SHKBP1-217ENST00000598558 FGGYQ96C11 551 aa11.9□□□□□ -0.5
SHKBP1-217ENST00000598558 RTL8AQ9BWD3 113 aa11.9□□□□□ -0.5
SHKBP1-217ENST00000598558 LPAR2Q9HBW0 351 aa11.9□□□□□ -0.5
SHKBP1-217ENST00000598558 YAE1D1Q9NRH1 226 aa11.9□□□□□ -0.5
SHKBP1-217ENST00000598558 BABAM2Q9NXR7 383 aa11.9□□□□□ -0.5
SHKBP1-217ENST00000598558 UBAP1Q9NZ09 502 aa11.9□□□□□ -0.5
SHKBP1-217ENST00000598558 ERVK-18Q9QC07 812 aa11.9□□□□□ -0.5
SHKBP1-217ENST00000598558 IGKV1-27A0A075B6S5 117 aa11.89□□□□□ -0.51
SHKBP1-217ENST00000598558 PPIAL4EA0A075B759 164 aa11.89□□□□□ -0.51
SHKBP1-217ENST00000598558 IGKV1-9A0A0C4DH69 117 aa11.89□□□□□ -0.51
SHKBP1-217ENST00000598558 PQLC2LA1A4F0 135 aa11.89□□□□□ -0.51
SHKBP1-217ENST00000598558 IRGMA1A4Y4 181 aa11.89□□□□□ -0.51
SHKBP1-217ENST00000598558 DHRS7CA6NNS2 312 aa11.89□□□□□ -0.51
SHKBP1-217ENST00000598558 CEACAM18A8MTB9 384 aa11.89□□□□□ -0.51
SHKBP1-217ENST00000598558 INAFM1C9JVW0 142 aa11.89□□□□□ -0.51
SHKBP1-217ENST00000598558 F5H0A9 414 aaPredicted RBP11.89□□□□□ -0.51
SHKBP1-217ENST00000598558 PPIAL4DF5H284 164 aa11.89□□□□□ -0.51
SHKBP1-217ENST00000598558 FCN3O75636 299 aa11.89□□□□□ -0.51
SHKBP1-217ENST00000598558 TGFAP01135 160 aa11.89□□□□□ -0.51
SHKBP1-217ENST00000598558 CDK1P06493 297 aa11.89□□□□□ -0.51
SHKBP1-217ENST00000598558 PPIAL4FP0DN26 164 aa11.89□□□□□ -0.51
SHKBP1-217ENST00000598558 ZFP36P26651 326 aaKnown RBP11.89□□□□□ -0.51
SHKBP1-217ENST00000598558 SNCBQ16143 134 aa11.89□□□□□ -0.51
SHKBP1-217ENST00000598558 TMEM155Q4W5P6 130 aa11.89□□□□□ -0.51
SHKBP1-217ENST00000598558 KCTD8Q6ZWB6 473 aa11.89□□□□□ -0.51
SHKBP1-217ENST00000598558 PEG10Q86TG7 708 aaKnown RBP11.89□□□□□ -0.51
SHKBP1-217ENST00000598558 STX19Q8N4C7 294 aa11.89□□□□□ -0.51
SHKBP1-217ENST00000598558 FTMTQ8N4E7 242 aa11.89□□□□□ -0.51
SHKBP1-217ENST00000598558 ZNF676Q8N7Q3 588 aa11.89□□□□□ -0.51
SHKBP1-217ENST00000598558 NANOGP1Q8N7R0 232 aa11.89□□□□□ -0.51
SHKBP1-217ENST00000598558 ZFP41Q8N8Y5 198 aa11.89□□□□□ -0.51
SHKBP1-217ENST00000598558 OR11L1Q8NGX0 322 aa11.89□□□□□ -0.51
SHKBP1-217ENST00000598558 OR52N1Q8NH53 320 aa11.89□□□□□ -0.51
SHKBP1-217ENST00000598558 LRRC29Q8WV35 223 aa11.89□□□□□ -0.51
SHKBP1-217ENST00000598558 MRPL48Q96GC5 212 aaKnown RBP11.89□□□□□ -0.51
SHKBP1-217ENST00000598558 CNBD2Q96M20 576 aa11.89□□□□□ -0.51
SHKBP1-217ENST00000598558 GAL3ST1Q99999 423 aa11.89□□□□□ -0.51
SHKBP1-217ENST00000598558 WDR13Q9H1Z4 485 aa11.89□□□□□ -0.51
SHKBP1-217ENST00000598558 DUSP21Q9H596 190 aa11.89□□□□□ -0.51
SHKBP1-217ENST00000598558 PATZ1Q9HBE1 687 aaKnown RBP11.89□□□□□ -0.51
SHKBP1-217ENST00000598558 RAB26Q9ULW5 256 aa11.89□□□□□ -0.51
SHKBP1-217ENST00000598558 PPIAL4AQ9Y536 164 aa11.89□□□□□ -0.51
SHKBP1-217ENST00000598558 DYSFO75923 2080 aa11.88□□□□□ -0.51
SHKBP1-217ENST00000598558 IGHV3OR15-7A0A075B7D8 119 aa11.88□□□□□ -0.51
SHKBP1-217ENST00000598558 TRBV2A0A0J9YWF9 115 aa11.88□□□□□ -0.51
SHKBP1-217ENST00000598558 LRRC30A6NM36 301 aa11.88□□□□□ -0.51
SHKBP1-217ENST00000598558 RRP9O43818 475 aaKnown RBP11.88□□□□□ -0.51
SHKBP1-217ENST00000598558 TFF1P04155 84 aa11.88□□□□□ -0.51
SHKBP1-217ENST00000598558 WNT2P09544 360 aa11.88□□□□□ -0.51
SHKBP1-217ENST00000598558 MYL12AP19105 171 aa11.88□□□□□ -0.51
SHKBP1-217ENST00000598558 AMY2BP19961 511 aa11.88□□□□□ -0.51
SHKBP1-217ENST00000598558 CFHR2P36980 270 aa11.88□□□□□ -0.51
SHKBP1-217ENST00000598558 MDH2P40926 338 aaKnown RBP11.88□□□□□ -0.51
SHKBP1-217ENST00000598558 HSPA13P48723 471 aa11.88□□□□□ -0.51
SHKBP1-217ENST00000598558 GNG3P63215 75 aa11.88□□□□□ -0.51
SHKBP1-217ENST00000598558 SLC35A2P78381 396 aa11.88□□□□□ -0.51
SHKBP1-217ENST00000598558 IRF3Q14653 427 aa11.88□□□□□ -0.51
SHKBP1-217ENST00000598558 CDK5R1Q15078 307 aa11.88□□□□□ -0.51
SHKBP1-217ENST00000598558 ZNF404Q494X3 552 aa11.88□□□□□ -0.51
SHKBP1-217ENST00000598558 ASPHD2Q6ICH7 369 aa11.88□□□□□ -0.51
SHKBP1-217ENST00000598558 TMPRSS11AQ6ZMR5 421 aa11.88□□□□□ -0.51
SHKBP1-217ENST00000598558 ANGPTL5Q86XS5 388 aa11.88□□□□□ -0.51
SHKBP1-217ENST00000598558 LINC01356Q8N9X3 169 aa11.88□□□□□ -0.51
SHKBP1-217ENST00000598558 NPRL2Q8WTW4 380 aa11.88□□□□□ -0.51
SHKBP1-217ENST00000598558 HIST1H2AAQ96QV6 131 aa11.88□□□□□ -0.51
SHKBP1-217ENST00000598558 HHLA2Q9UM44 414 aa11.88□□□□□ -0.51
SHKBP1-217ENST00000598558 TANC2Q9HCD6 1990 aa11.88□□□□□ -0.51
SHKBP1-217ENST00000598558 hCG_1807616A0A1W2PRN6 198 aa11.87□□□□□ -0.51
SHKBP1-217ENST00000598558 ANKRD61A6NGH8 418 aa11.87□□□□□ -0.51
SHKBP1-217ENST00000598558 TMEM210A6NLX4 147 aa11.87□□□□□ -0.51
SHKBP1-217ENST00000598558 LGALS8O00214 317 aa11.87□□□□□ -0.51
SHKBP1-217ENST00000598558 AKR7A2O43488 359 aa11.87□□□□□ -0.51
SHKBP1-217ENST00000598558 PLPP2O43688 288 aa11.87□□□□□ -0.51
SHKBP1-217ENST00000598558 SYNGR1O43759 233 aa11.87□□□□□ -0.51
SHKBP1-217ENST00000598558 FSTL3O95633 263 aa11.87□□□□□ -0.51
SHKBP1-217ENST00000598558 IRF2P14316 349 aa11.87□□□□□ -0.51
SHKBP1-217ENST00000598558 CRHBPP24387 322 aa11.87□□□□□ -0.51
SHKBP1-217ENST00000598558 GMFBP60983 142 aa11.87□□□□□ -0.51
SHKBP1-217ENST00000598558 MZT1Q08AG7 82 aa11.87□□□□□ -0.51
SHKBP1-217ENST00000598558 MRPL28Q13084 256 aaKnown RBP11.87□□□□□ -0.51
SHKBP1-217ENST00000598558 DMKNQ6E0U4 476 aaPredicted RBP11.87□□□□□ -0.51
SHKBP1-217ENST00000598558 RPL22L1Q6P5R6 122 aaKnown RBP11.87□□□□□ -0.51
SHKBP1-217ENST00000598558 CRIP3Q6Q6R5 217 aa11.87□□□□□ -0.51
SHKBP1-217ENST00000598558 ZNF841Q6ZN19 808 aa11.87□□□□□ -0.51
SHKBP1-217ENST00000598558 FAM90A1Q86YD7 464 aa11.87□□□□□ -0.51
SHKBP1-217ENST00000598558 CALHM1Q8IU99 346 aa11.87□□□□□ -0.51
SHKBP1-217ENST00000598558 C1orf87Q8N0U7 546 aa11.87□□□□□ -0.51
SHKBP1-217ENST00000598558 CCDC54Q8NEL0 328 aa11.87□□□□□ -0.51
SHKBP1-217ENST00000598558 OR13C5Q8NGS8 318 aa11.87□□□□□ -0.51
SHKBP1-217ENST00000598558 OR5AK2Q8NH90 309 aa11.87□□□□□ -0.51
SHKBP1-217ENST00000598558 TRMT10AQ8TBZ6 339 aaKnown RBP11.87□□□□□ -0.51
SHKBP1-217ENST00000598558 AQP3Q92482 292 aa11.87□□□□□ -0.51
SHKBP1-217ENST00000598558 ZNF488Q96MN9 340 aa11.87□□□□□ -0.51
SHKBP1-217ENST00000598558 OR5M11Q96RB7 305 aa11.87□□□□□ -0.51
SHKBP1-217ENST00000598558 CDCA4Q9BXL8 241 aa11.87□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms