RNA–Protein interactions for RNA: ENST00000594090.5

VRK3-206, Transcript of vaccinia related kinase 3, humanhuman

TSL 1 (best)

Gene VRK3, Length 1,448 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-206ENST00000594090 EGR1P18146 543 aa12.18□□□□□ -0.46
VRK3-206ENST00000594090 HNF1AP20823 631 aa12.18□□□□□ -0.46
VRK3-206ENST00000594090 GPM6AP51674 278 aa12.18□□□□□ -0.46
VRK3-206ENST00000594090 NANOS3P60323 173 aaKnown RBP12.18□□□□□ -0.46
VRK3-206ENST00000594090 GNG3P63215 75 aa12.18□□□□□ -0.46
VRK3-206ENST00000594090 LCN2P80188 198 aa12.18□□□□□ -0.46
VRK3-206ENST00000594090 KCNJ8Q15842 424 aa12.18□□□□□ -0.46
VRK3-206ENST00000594090 ESCO2Q56NI9 601 aa12.18□□□□□ -0.46
VRK3-206ENST00000594090 DMRTC1Q5HYR2 192 aa12.18□□□□□ -0.46
VRK3-206ENST00000594090 CLVS2Q5SYC1 327 aa12.18□□□□□ -0.46
VRK3-206ENST00000594090 TMEM42Q69YG0 159 aa12.18□□□□□ -0.46
VRK3-206ENST00000594090 SFRP4Q6FHJ7 346 aaPredicted RBP12.18□□□□□ -0.46
VRK3-206ENST00000594090 MOB3CQ70IA8 216 aa12.18□□□□□ -0.46
VRK3-206ENST00000594090 C8orf59Q8N0T1 100 aaPredicted RBP12.18□□□□□ -0.46
VRK3-206ENST00000594090 SYS1Q8N2H4 156 aa12.18□□□□□ -0.46
VRK3-206ENST00000594090 RPL3LQ92901 407 aaKnown RBP12.18□□□□□ -0.46
VRK3-206ENST00000594090 ISG20L2Q9H9L3 353 aaKnown RBP12.18□□□□□ -0.46
VRK3-206ENST00000594090 PLEKHA1Q9HB21 404 aa12.18□□□□□ -0.46
VRK3-206ENST00000594090 FRRS1LQ9P0K9 344 aa12.18□□□□□ -0.46
VRK3-206ENST00000594090 LRCH1Q9Y2L9 728 aa12.18□□□□□ -0.46
VRK3-206ENST00000594090 C2CD3Q4AC94 2353 aa12.18□□□□□ -0.46
VRK3-206ENST00000594090 TRAV38-1A0A0B4J264 116 aa12.17□□□□□ -0.46
VRK3-206ENST00000594090 IRGMA1A4Y4 181 aa12.17□□□□□ -0.46
VRK3-206ENST00000594090 A6NIN4 97 aa12.17□□□□□ -0.46
VRK3-206ENST00000594090 KIAA1324LA8MWY0 1029 aaPredicted RBP12.17□□□□□ -0.46
VRK3-206ENST00000594090 ZNF732B4DXR9 585 aa12.17□□□□□ -0.46
VRK3-206ENST00000594090 H0YHG0 523 aa12.17□□□□□ -0.46
VRK3-206ENST00000594090 FAM157CP0CG43 387 aa12.17□□□□□ -0.46
VRK3-206ENST00000594090 CPT2P23786 658 aa12.17□□□□□ -0.46
VRK3-206ENST00000594090 ZFP36P26651 326 aaKnown RBP12.17□□□□□ -0.46
VRK3-206ENST00000594090 CFHR2P36980 270 aa12.17□□□□□ -0.46
VRK3-206ENST00000594090 TMEM244Q5VVB8 128 aa12.17□□□□□ -0.46
VRK3-206ENST00000594090 EGFL6Q8IUX8 553 aa12.17□□□□□ -0.46
VRK3-206ENST00000594090 SCCPDHQ8NBX0 429 aa12.17□□□□□ -0.46
VRK3-206ENST00000594090 CCDC54Q8NEL0 328 aa12.17□□□□□ -0.46
VRK3-206ENST00000594090 OR8B3Q8NGG8 313 aa12.17□□□□□ -0.46
VRK3-206ENST00000594090 OR5A2Q8NGI9 324 aa12.17□□□□□ -0.46
VRK3-206ENST00000594090 TFAP2CQ92754 450 aa12.17□□□□□ -0.46
VRK3-206ENST00000594090 NEIL1Q96FI4 390 aaPredicted RBP12.17□□□□□ -0.46
VRK3-206ENST00000594090 OR8B2Q96RD0 313 aa12.17□□□□□ -0.46
VRK3-206ENST00000594090 SSBP3Q9BWW4 388 aaPredicted RBP12.17□□□□□ -0.46
VRK3-206ENST00000594090 TRIM36Q9NQ86 728 aa12.17□□□□□ -0.46
VRK3-206ENST00000594090 GPR173Q9NS66 373 aa12.17□□□□□ -0.46
VRK3-206ENST00000594090 SONP18583 2426 aaKnown RBP12.16□□□□□ -0.46
VRK3-206ENST00000594090 IGHV3OR15-7A0A075B7D8 119 aa12.16□□□□□ -0.46
VRK3-206ENST00000594090 A0A0G2JMP0 313 aa12.16□□□□□ -0.46
VRK3-206ENST00000594090 A0A0X1KG70 313 aa12.16□□□□□ -0.46
VRK3-206ENST00000594090 SRRM5B3KS81 715 aa12.16□□□□□ -0.46
VRK3-206ENST00000594090 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP12.16□□□□□ -0.46
VRK3-206ENST00000594090 PHF1O43189 567 aaPredicted RBP12.16□□□□□ -0.46
VRK3-206ENST00000594090 ISG15P05161 165 aa12.16□□□□□ -0.46
VRK3-206ENST00000594090 CCR9P51686 369 aa12.16□□□□□ -0.46
VRK3-206ENST00000594090 AQP4P55087 323 aa12.16□□□□□ -0.46
VRK3-206ENST00000594090 ALKBH1Q13686 389 aaKnown RBP12.16□□□□□ -0.46
VRK3-206ENST00000594090 DCAF12L2Q5VW00 463 aa12.16□□□□□ -0.46
VRK3-206ENST00000594090 TEX36Q5VZQ5 186 aa12.16□□□□□ -0.46
VRK3-206ENST00000594090 LYPD2Q6UXB3 125 aa12.16□□□□□ -0.46
VRK3-206ENST00000594090 NLRC3Q7RTR2 1065 aa12.16□□□□□ -0.46
VRK3-206ENST00000594090 PRIMA1Q86XR5 153 aa12.16□□□□□ -0.46
VRK3-206ENST00000594090 FAM90A1Q86YD7 464 aa12.16□□□□□ -0.46
VRK3-206ENST00000594090 RDH10Q8IZV5 341 aa12.16□□□□□ -0.46
VRK3-206ENST00000594090 OR4M2Q8NGB6 313 aa12.16□□□□□ -0.46
VRK3-206ENST00000594090 OR10Z1Q8NGY1 313 aa12.16□□□□□ -0.46
VRK3-206ENST00000594090 OR51I2Q9H344 312 aa12.16□□□□□ -0.46
VRK3-206ENST00000594090 POLR3KQ9Y2Y1 108 aaPredicted RBP12.16□□□□□ -0.46
VRK3-206ENST00000594090 NIPBLQ6KC79 2804 aaeCLIP12.15□□□□□ -0.46
VRK3-206ENST00000594090 PPIAL4CA0A0B4J2A2 164 aa12.15□□□□□ -0.46
VRK3-206ENST00000594090 ANKRD61A6NGH8 418 aa12.15□□□□□ -0.46
VRK3-206ENST00000594090 J3QLI3 93 aa12.15□□□□□ -0.46
VRK3-206ENST00000594090 GYPAP02724 150 aa12.15□□□□□ -0.46
VRK3-206ENST00000594090 LIMS3P0CW19 117 aa12.15□□□□□ -0.46
VRK3-206ENST00000594090 LIMS4P0CW20 117 aa12.15□□□□□ -0.46
VRK3-206ENST00000594090 ZNF12P17014 697 aa12.15□□□□□ -0.46
VRK3-206ENST00000594090 SRD5A1P18405 259 aa12.15□□□□□ -0.46
VRK3-206ENST00000594090 GATA3P23771 443 aa12.15□□□□□ -0.46
VRK3-206ENST00000594090 DCKP27707 260 aa12.15□□□□□ -0.46
VRK3-206ENST00000594090 PITPNBP48739 271 aa12.15□□□□□ -0.46
VRK3-206ENST00000594090 ETV1P50549 477 aa12.15□□□□□ -0.46
VRK3-206ENST00000594090 GNB2P62879 340 aa12.15□□□□□ -0.46
VRK3-206ENST00000594090 MRPL28Q13084 256 aaKnown RBP12.15□□□□□ -0.46
VRK3-206ENST00000594090 LAIR2Q6ISS4 152 aa12.15□□□□□ -0.46
VRK3-206ENST00000594090 FAHD2BQ6P2I3 314 aaPredicted RBP12.15□□□□□ -0.46
VRK3-206ENST00000594090 FBLIM1Q8WUP2 373 aa12.15□□□□□ -0.46
VRK3-206ENST00000594090 FAHD2AQ96GK7 314 aa12.15□□□□□ -0.46
VRK3-206ENST00000594090 TMPRSS13Q9BYE2 586 aa12.15□□□□□ -0.46
VRK3-206ENST00000594090 CTSZQ9UBR2 303 aa12.15□□□□□ -0.46
VRK3-206ENST00000594090 DIMT1Q9UNQ2 313 aaKnown RBP12.15□□□□□ -0.46
VRK3-206ENST00000594090 SVEP1Q4LDE5 3571 aa12.15□□□□□ -0.46
VRK3-206ENST00000594090 SETD2Q9BYW2 2564 aaPredicted RBP12.14□□□□□ -0.47
VRK3-206ENST00000594090 OR4C45A6NMZ5 311 aa12.14□□□□□ -0.47
VRK3-206ENST00000594090 H0YJX3 145 aa12.14□□□□□ -0.47
VRK3-206ENST00000594090 TRAPPC2LH3BP13 241 aa12.14□□□□□ -0.47
VRK3-206ENST00000594090 TNFRSF13BO14836 293 aaPredicted RBP12.14□□□□□ -0.47
VRK3-206ENST00000594090 AKR7A2O43488 359 aa12.14□□□□□ -0.47
VRK3-206ENST00000594090 RHBDL1O75783 438 aa12.14□□□□□ -0.47
VRK3-206ENST00000594090 MUC1P15941 1255 aaPredicted RBP12.14□□□□□ -0.47
VRK3-206ENST00000594090 MYL12AP19105 171 aa12.14□□□□□ -0.47
VRK3-206ENST00000594090 MICBQ29980 383 aa12.14□□□□□ -0.47
VRK3-206ENST00000594090 KRTAP21-3Q3LHN1 58 aa12.14□□□□□ -0.47
VRK3-206ENST00000594090 ZNF841Q6ZN19 808 aa12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms