RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 MAGEB3O15480 346 aa21.41■■□□□ 1.02
SHMT1-207ENST00000580002 CEACAM21Q3KPI0 293 aa21.41■■□□□ 1.02
SHMT1-207ENST00000580002 C2orf76Q3KRA6 126 aa21.41■■□□□ 1.02
SHMT1-207ENST00000580002 CALHM1Q8IU99 346 aa21.41■■□□□ 1.02
SHMT1-207ENST00000580002 ZNF671Q8TAW3 534 aa21.41■■□□□ 1.02
SHMT1-207ENST00000580002 RNF170Q96K19 258 aa21.41■■□□□ 1.02
SHMT1-207ENST00000580002 GPER1Q99527 375 aa21.41■■□□□ 1.02
SHMT1-207ENST00000580002 CMAHPQ9Y471 501 aa21.41■■□□□ 1.02
SHMT1-207ENST00000580002 PKDREJQ9NTG1 2253 aa21.4■■□□□ 1.02
SHMT1-207ENST00000580002 IGLV3-9A0A075B6K5 115 aa21.4■■□□□ 1.02
SHMT1-207ENST00000580002 ZNF732B4DXR9 585 aa21.4■■□□□ 1.02
SHMT1-207ENST00000580002 SPRY1O43609 319 aaPredicted RBP21.4■■□□□ 1.02
SHMT1-207ENST00000580002 IGHV3-13P01766 116 aa21.4■■□□□ 1.02
SHMT1-207ENST00000580002 OR4A8P0C604 315 aa21.4■■□□□ 1.02
SHMT1-207ENST00000580002 PSMD7P51665 324 aa21.4■■□□□ 1.02
SHMT1-207ENST00000580002 EFNB2P52799 333 aa21.4■■□□□ 1.02
SHMT1-207ENST00000580002 CNN3Q15417 329 aaKnown RBP21.4■■□□□ 1.02
SHMT1-207ENST00000580002 WDR86Q86TI4 376 aa21.4■■□□□ 1.02
SHMT1-207ENST00000580002 MRPL24Q96A35 216 aaKnown RBP21.4■■□□□ 1.02
SHMT1-207ENST00000580002 FAM3DQ96BQ1 224 aa21.4■■□□□ 1.02
SHMT1-207ENST00000580002 BORCS8Q96FH0 119 aa21.4■■□□□ 1.02
SHMT1-207ENST00000580002 PQLC2LA1A4F0 135 aa21.39■■□□□ 1.01
SHMT1-207ENST00000580002 ANGPTL7O43827 346 aa21.39■■□□□ 1.01
SHMT1-207ENST00000580002 ERCC1P07992 297 aaPredicted RBP21.39■■□□□ 1.01
SHMT1-207ENST00000580002 PLA2G2AP14555 144 aa21.39■■□□□ 1.01
SHMT1-207ENST00000580002 FUT6P51993 359 aa21.39■■□□□ 1.01
SHMT1-207ENST00000580002 KLF3P57682 345 aaPredicted RBP21.39■■□□□ 1.01
SHMT1-207ENST00000580002 SPRNQ5BIV9 151 aa21.39■■□□□ 1.01
SHMT1-207ENST00000580002 BIVMQ86UB2 503 aa21.39■■□□□ 1.01
SHMT1-207ENST00000580002 CROCCP3Q8IVE0 287 aa21.39■■□□□ 1.01
SHMT1-207ENST00000580002 C1orf174Q8IYL3 243 aa21.39■■□□□ 1.01
SHMT1-207ENST00000580002 SPSB1Q96BD6 273 aa21.39■■□□□ 1.01
SHMT1-207ENST00000580002 TMEM100Q9NV29 134 aa21.39■■□□□ 1.01
SHMT1-207ENST00000580002 TAAR3PQ9P1P4 343 aa21.39■■□□□ 1.01
SHMT1-207ENST00000580002 SLC7A11Q9UPY5 501 aa21.39■■□□□ 1.01
SHMT1-207ENST00000580002 RNF115Q9Y4L5 304 aa21.39■■□□□ 1.01
SHMT1-207ENST00000580002 MPC1Q9Y5U8 109 aa21.39■■□□□ 1.01
SHMT1-207ENST00000580002 A3GALT2U3KPV4 340 aa21.39■■□□□ 1.01
SHMT1-207ENST00000580002 HRNRQ86YZ3 2850 aaPredicted RBP21.39■■□□□ 1.01
SHMT1-207ENST00000580002 A0A1W2PPR1 153 aa21.38■■□□□ 1.01
SHMT1-207ENST00000580002 EIF4EP06730 217 aaKnown RBP21.38■■□□□ 1.01
SHMT1-207ENST00000580002 PRKACBP22694 351 aa21.38■■□□□ 1.01
SHMT1-207ENST00000580002 TNFSF8P32971 234 aa21.38■■□□□ 1.01
SHMT1-207ENST00000580002 ALDH3B1P43353 468 aa21.38■■□□□ 1.01
SHMT1-207ENST00000580002 POU3F4P49335 361 aa21.38■■□□□ 1.01
SHMT1-207ENST00000580002 ZP1P60852 638 aa21.38■■□□□ 1.01
SHMT1-207ENST00000580002 BATF2Q8N1L9 274 aa21.38■■□□□ 1.01
SHMT1-207ENST00000580002 SAMD12Q8N8I0 201 aa21.38■■□□□ 1.01
SHMT1-207ENST00000580002 AP3S1Q92572 193 aa21.38■■□□□ 1.01
SHMT1-207ENST00000580002 C1orf147Q96MC9 270 aaPredicted RBP21.38■■□□□ 1.01
SHMT1-207ENST00000580002 SORCS2Q96PQ0 1159 aa21.38■■□□□ 1.01
SHMT1-207ENST00000580002 ADAT1Q9BUB4 502 aaKnown RBP21.38■■□□□ 1.01
SHMT1-207ENST00000580002 A0A1W2PP11 408 aa21.38■■□□□ 1.01
SHMT1-207ENST00000580002 ZSCAN5BA6NJL1 495 aa21.38■■□□□ 1.01
SHMT1-207ENST00000580002 F5H5P2 479 aa21.38■■□□□ 1.01
SHMT1-207ENST00000580002 BMP4P12644 408 aa21.38■■□□□ 1.01
SHMT1-207ENST00000580002 RBP2P50120 134 aa21.38■■□□□ 1.01
SHMT1-207ENST00000580002 RPS23P62266 143 aaKnown RBP21.38■■□□□ 1.01
SHMT1-207ENST00000580002 GLIPR1L1Q6UWM5 242 aa21.38■■□□□ 1.01
SHMT1-207ENST00000580002 FTMTQ8N4E7 242 aa21.38■■□□□ 1.01
SHMT1-207ENST00000580002 OR6M1Q8NGM8 313 aa21.38■■□□□ 1.01
SHMT1-207ENST00000580002 OR10K1Q8NGX5 313 aa21.38■■□□□ 1.01
SHMT1-207ENST00000580002 FOXRED1Q96CU9 486 aaPredicted RBP21.38■■□□□ 1.01
SHMT1-207ENST00000580002 MRPS28Q9Y2Q9 187 aaKnown RBP21.38■■□□□ 1.01
SHMT1-207ENST00000580002 LRRK2Q5S007 2527 aa21.37■■□□□ 1.01
SHMT1-207ENST00000580002 LOC100289279A0A1B0GTE1 492 aa21.37■■□□□ 1.01
SHMT1-207ENST00000580002 TMEM272A0A1B0GTI8 110 aa21.37■■□□□ 1.01
SHMT1-207ENST00000580002 ELK1P19419 428 aa21.37■■□□□ 1.01
SHMT1-207ENST00000580002 CFPP27918 469 aa21.37■■□□□ 1.01
SHMT1-207ENST00000580002 PTGFRP43088 359 aa21.37■■□□□ 1.01
SHMT1-207ENST00000580002 OR8G1Q15617 311 aa21.37■■□□□ 1.01
SHMT1-207ENST00000580002 TNFAIP8L1Q8WVP5 186 aa21.37■■□□□ 1.01
SHMT1-207ENST00000580002 KCTD12Q96CX2 325 aaKnown RBP21.37■■□□□ 1.01
SHMT1-207ENST00000580002 SLC25A38Q96DW6 304 aa21.37■■□□□ 1.01
SHMT1-207ENST00000580002 GAL3ST1Q99999 423 aa21.37■■□□□ 1.01
SHMT1-207ENST00000580002 UQCC2Q9BRT2 126 aa21.37■■□□□ 1.01
SHMT1-207ENST00000580002 TMEM204Q9BSN7 226 aa21.37■■□□□ 1.01
SHMT1-207ENST00000580002 ZNF442Q9H7R0 627 aa21.37■■□□□ 1.01
SHMT1-207ENST00000580002 ABRACLQ9P1F3 81 aa21.37■■□□□ 1.01
SHMT1-207ENST00000580002 ING4Q9UNL4 249 aa21.37■■□□□ 1.01
SHMT1-207ENST00000580002 IGKV1-12A0A0C4DH73 117 aa21.36■■□□□ 1.01
SHMT1-207ENST00000580002 IGKV1D-12P01611 117 aa21.36■■□□□ 1.01
SHMT1-207ENST00000580002 AWAT2Q6E213 333 aa21.36■■□□□ 1.01
SHMT1-207ENST00000580002 MEX3BQ6ZN04 569 aaKnown RBP21.36■■□□□ 1.01
SHMT1-207ENST00000580002 LHFPL2Q6ZUX7 228 aa21.36■■□□□ 1.01
SHMT1-207ENST00000580002 ZCCHC24Q8N2G6 241 aaKnown RBP21.36■■□□□ 1.01
SHMT1-207ENST00000580002 OR5A2Q8NGI9 324 aa21.36■■□□□ 1.01
SHMT1-207ENST00000580002 OR8S1Q8NH09 359 aa21.36■■□□□ 1.01
SHMT1-207ENST00000580002 ACOT12Q8WYK0 555 aa21.36■■□□□ 1.01
SHMT1-207ENST00000580002 HIST1H2AAQ96QV6 131 aa21.36■■□□□ 1.01
SHMT1-207ENST00000580002 SPATA2Q9UM82 520 aa21.36■■□□□ 1.01
SHMT1-207ENST00000580002 LRBAP50851 2863 aa21.36■■□□□ 1.01
SHMT1-207ENST00000580002 CALCBP10092 127 aa21.36■■□□□ 1.01
SHMT1-207ENST00000580002 ARSBP15848 533 aa21.36■■□□□ 1.01
SHMT1-207ENST00000580002 ATP1B3P54709 279 aa21.36■■□□□ 1.01
SHMT1-207ENST00000580002 FAM46BQ96A09 425 aa21.36■■□□□ 1.01
SHMT1-207ENST00000580002 CYYR1Q96J86 154 aa21.36■■□□□ 1.01
SHMT1-207ENST00000580002 CISD1Q9NZ45 108 aaKnown RBP21.36■■□□□ 1.01
SHMT1-207ENST00000580002 PEX16Q9Y5Y5 336 aa21.36■■□□□ 1.01
SHMT1-207ENST00000580002 INHBBP09529 407 aa21.35■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms