RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 M0R1W7 72 aa17.23■□□□□ 0.35
VPS53-216ENST00000574029 PAHP00439 452 aa17.23■□□□□ 0.35
VPS53-216ENST00000574029 CST4P01036 141 aa17.23■□□□□ 0.35
VPS53-216ENST00000574029 ACKR3P25106 362 aa17.23■□□□□ 0.35
VPS53-216ENST00000574029 GSTT1P30711 240 aa17.23■□□□□ 0.35
VPS53-216ENST00000574029 GMFBP60983 142 aa17.23■□□□□ 0.35
VPS53-216ENST00000574029 ACSM1Q08AH1 577 aa17.23■□□□□ 0.35
VPS53-216ENST00000574029 PRDX4Q13162 271 aa17.23■□□□□ 0.35
VPS53-216ENST00000574029 MICAQ29983 383 aa17.23■□□□□ 0.35
VPS53-216ENST00000574029 NCR3LG1Q68D85 454 aa17.23■□□□□ 0.35
VPS53-216ENST00000574029 TIGD4Q8IY51 512 aa17.23■□□□□ 0.35
VPS53-216ENST00000574029 FGF23Q9GZV9 251 aaPredicted RBP17.23■□□□□ 0.35
VPS53-216ENST00000574029 METTL8Q9H825 291 aaKnown RBP17.23■□□□□ 0.35
VPS53-216ENST00000574029 MED20Q9H944 212 aa17.23■□□□□ 0.35
VPS53-216ENST00000574029 ABCB9Q9NP78 766 aa17.23■□□□□ 0.35
VPS53-216ENST00000574029 SLC25A10Q9UBX3 287 aaPredicted RBP17.23■□□□□ 0.35
VPS53-216ENST00000574029 ZNF391Q9UJN7 358 aa17.23■□□□□ 0.35
VPS53-216ENST00000574029 TET2Q6N021 2002 aaPredicted RBP17.23■□□□□ 0.35
VPS53-216ENST00000574029 FAM183AA6NL82 134 aa17.22■□□□□ 0.35
VPS53-216ENST00000574029 ZNF850A8MQ14 1090 aa17.22■□□□□ 0.35
VPS53-216ENST00000574029 GLCEO94923 617 aa17.22■□□□□ 0.35
VPS53-216ENST00000574029 TFF1P04155 84 aa17.22■□□□□ 0.35
VPS53-216ENST00000574029 H2BFMP0C1H6 154 aa17.22■□□□□ 0.35
VPS53-216ENST00000574029 RAP2AP10114 183 aa17.22■□□□□ 0.35
VPS53-216ENST00000574029 DCTDP32321 178 aa17.22■□□□□ 0.35
VPS53-216ENST00000574029 CAV3P56539 151 aa17.22■□□□□ 0.35
VPS53-216ENST00000574029 ADGRG5Q8IZF4 528 aa17.22■□□□□ 0.35
VPS53-216ENST00000574029 BEND2Q8NDZ0 799 aa17.22■□□□□ 0.35
VPS53-216ENST00000574029 U3KQV3 271 aa17.22■□□□□ 0.35
VPS53-216ENST00000574029 ANKRD61A6NGH8 418 aa17.21■□□□□ 0.35
VPS53-216ENST00000574029 SIGLEC5O15389 551 aa17.21■□□□□ 0.35
VPS53-216ENST00000574029 AKR7A2O43488 359 aa17.21■□□□□ 0.35
VPS53-216ENST00000574029 ACAA1P09110 424 aaPredicted RBP17.21■□□□□ 0.35
VPS53-216ENST00000574029 CSF1P09603 554 aa17.21■□□□□ 0.35
VPS53-216ENST00000574029 FLOT2Q14254 428 aa17.21■□□□□ 0.35
VPS53-216ENST00000574029 OR2T5Q6IEZ7 315 aa17.21■□□□□ 0.35
VPS53-216ENST00000574029 CD300LDQ6UXZ3 194 aa17.21■□□□□ 0.35
VPS53-216ENST00000574029 OR2T29Q8NH02 315 aa17.21■□□□□ 0.35
VPS53-216ENST00000574029 HPSE2Q8WWQ2 592 aa17.21■□□□□ 0.35
VPS53-216ENST00000574029 RNF170Q96K19 258 aa17.21■□□□□ 0.35
VPS53-216ENST00000574029 LYZL4Q96KX0 146 aa17.21■□□□□ 0.35
VPS53-216ENST00000574029 PPA2Q9H2U2 334 aa17.21■□□□□ 0.35
VPS53-216ENST00000574029 REEP1Q9H902 201 aa17.21■□□□□ 0.35
VPS53-216ENST00000574029 SAMHD1Q9Y3Z3 626 aaKnown RBP17.21■□□□□ 0.35
VPS53-216ENST00000574029 NDUFB7P17568 137 aa17.2■□□□□ 0.34
VPS53-216ENST00000574029 GK3PQ14409 553 aa17.2■□□□□ 0.34
VPS53-216ENST00000574029 HCP5Q6MZN7 132 aa17.2■□□□□ 0.34
VPS53-216ENST00000574029 TEX47Q8TBZ9 253 aa17.2■□□□□ 0.34
VPS53-216ENST00000574029 CANT1Q8WVQ1 401 aa17.2■□□□□ 0.34
VPS53-216ENST00000574029 PIGCQ92535 297 aa17.2■□□□□ 0.34
VPS53-216ENST00000574029 DUS3LQ96G46 650 aaKnown RBP17.2■□□□□ 0.34
VPS53-216ENST00000574029 NIPSNAP1Q9BPW8 284 aa17.2■□□□□ 0.34
VPS53-216ENST00000574029 CHID1Q9BWS9 393 aa17.2■□□□□ 0.34
VPS53-216ENST00000574029 NLKQ9UBE8 527 aa17.2■□□□□ 0.34
VPS53-216ENST00000574029 A0A1W2PQ09 198 aa17.19■□□□□ 0.34
VPS53-216ENST00000574029 TCRBV3S1A0A5B6 114 aa17.19■□□□□ 0.34
VPS53-216ENST00000574029 OR2AT4A6NND4 320 aa17.19■□□□□ 0.34
VPS53-216ENST00000574029 H3BUX3 64 aa17.19■□□□□ 0.34
VPS53-216ENST00000574029 LYNP07948 512 aa17.19■□□□□ 0.34
VPS53-216ENST00000574029 GABRA5P31644 462 aa17.19■□□□□ 0.34
VPS53-216ENST00000574029 BLMHQ13867 455 aa17.19■□□□□ 0.34
VPS53-216ENST00000574029 HERPUD1Q15011 391 aa17.19■□□□□ 0.34
VPS53-216ENST00000574029 KCTD8Q6ZWB6 473 aa17.19■□□□□ 0.34
VPS53-216ENST00000574029 KRT74Q7RTS7 529 aa17.19■□□□□ 0.34
VPS53-216ENST00000574029 HIST2H2ABQ8IUE6 130 aaPredicted RBP17.19■□□□□ 0.34
VPS53-216ENST00000574029 ZDHHC23Q8IYP9 409 aa17.19■□□□□ 0.34
VPS53-216ENST00000574029 IQCF1Q8N6M8 205 aa17.19■□□□□ 0.34
VPS53-216ENST00000574029 PAPD5Q8NDF8 572 aaKnown RBP17.19■□□□□ 0.34
VPS53-216ENST00000574029 OTOSQ8NHW6 89 aa17.19■□□□□ 0.34
VPS53-216ENST00000574029 OTULINQ96BN8 352 aa17.19■□□□□ 0.34
VPS53-216ENST00000574029 SF3B6Q9Y3B4 125 aaKnown RBP17.19■□□□□ 0.34
VPS53-216ENST00000574029 RHBDL1O75783 438 aa17.18■□□□□ 0.34
VPS53-216ENST00000574029 GLRA1P23415 457 aa17.18■□□□□ 0.34
VPS53-216ENST00000574029 ASRGL1Q7L266 308 aa17.18■□□□□ 0.34
VPS53-216ENST00000574029 ZNF454Q8N9F8 522 aa17.18■□□□□ 0.34
VPS53-216ENST00000574029 OR10G2Q8NGC3 310 aa17.18■□□□□ 0.34
VPS53-216ENST00000574029 PPP1R35Q8TAP8 253 aa17.18■□□□□ 0.34
VPS53-216ENST00000574029 THEM6Q8WUY1 208 aa17.18■□□□□ 0.34
VPS53-216ENST00000574029 C17orf50Q8WW18 174 aa17.18■□□□□ 0.34
VPS53-216ENST00000574029 AJUBAQ96IF1 538 aa17.18■□□□□ 0.34
VPS53-216ENST00000574029 SSX3Q99909 188 aa17.18■□□□□ 0.34
VPS53-216ENST00000574029 OR51V1Q9H2C8 321 aa17.18■□□□□ 0.34
VPS53-216ENST00000574029 ELL3Q9HB65 397 aaPredicted RBP17.18■□□□□ 0.34
VPS53-216ENST00000574029 ZNF222Q9UK12 451 aa17.18■□□□□ 0.34
VPS53-216ENST00000574029 MAB21L2Q9Y586 359 aa17.18■□□□□ 0.34
VPS53-216ENST00000574029 IGKV1D-17A0A075B6S4 117 aa17.17■□□□□ 0.34
VPS53-216ENST00000574029 TRBV23-1A0A0A0MS06 115 aa17.17■□□□□ 0.34
VPS53-216ENST00000574029 SELENOFO60613 162 aa17.17■□□□□ 0.34
VPS53-216ENST00000574029 POU1F1P28069 291 aa17.17■□□□□ 0.34
VPS53-216ENST00000574029 KIR2DS4P43632 304 aa17.17■□□□□ 0.34
VPS53-216ENST00000574029 EFNB2P52799 333 aa17.17■□□□□ 0.34
VPS53-216ENST00000574029 PSMA6P60900 246 aaKnown RBP17.17■□□□□ 0.34
VPS53-216ENST00000574029 C11orf88Q6PI97 169 aa17.17■□□□□ 0.34
VPS53-216ENST00000574029 Q6ZTK2 550 aa17.17■□□□□ 0.34
VPS53-216ENST00000574029 SPATA24Q86W54 205 aa17.17■□□□□ 0.34
VPS53-216ENST00000574029 OR8B12Q8NGG6 310 aa17.17■□□□□ 0.34
VPS53-216ENST00000574029 OR5D13Q8NGL4 314 aa17.17■□□□□ 0.34
VPS53-216ENST00000574029 HIST1H2AAQ96QV6 131 aa17.17■□□□□ 0.34
VPS53-216ENST00000574029 FAM234AQ9H0X4 552 aa17.17■□□□□ 0.34
VPS53-216ENST00000574029 MEGF9Q9H1U4 602 aa17.17■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms