RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 PMS2CLQ68D20 193 aa19.95■□□□□ 0.78
VPS53-211ENST00000571805 M1APQ8TC57 530 aa19.95■□□□□ 0.78
VPS53-211ENST00000571805 RHBDD1Q8TEB9 315 aa19.95■□□□□ 0.78
VPS53-211ENST00000571805 MR1Q95460 341 aa19.95■□□□□ 0.78
VPS53-211ENST00000571805 ZNF837Q96EG3 531 aaPredicted RBP19.95■□□□□ 0.78
VPS53-211ENST00000571805 MICU1Q9BPX6 476 aa19.95■□□□□ 0.78
VPS53-211ENST00000571805 NAA11Q9BSU3 229 aaPredicted RBP19.95■□□□□ 0.78
VPS53-211ENST00000571805 PCDHGA1Q9Y5H4 931 aa19.95■□□□□ 0.78
VPS53-211ENST00000571805 HTR3BO95264 441 aa19.94■□□□□ 0.78
VPS53-211ENST00000571805 BHLHE23Q8NDY6 225 aa19.94■□□□□ 0.78
VPS53-211ENST00000571805 OR1S2Q8NGQ3 325 aa19.94■□□□□ 0.78
VPS53-211ENST00000571805 FBXO17Q96EF6 278 aa19.94■□□□□ 0.78
VPS53-211ENST00000571805 PIGMQ9H3S5 423 aa19.94■□□□□ 0.78
VPS53-211ENST00000571805 EHFQ9NZC4 300 aa19.94■□□□□ 0.78
VPS53-211ENST00000571805 PCDHB10Q9UN67 800 aa19.94■□□□□ 0.78
VPS53-211ENST00000571805 A0A0J9YW62 118 aa19.94■□□□□ 0.78
VPS53-211ENST00000571805 SERPINE3A8MV23 424 aa19.94■□□□□ 0.78
VPS53-211ENST00000571805 M0R135 149 aa19.94■□□□□ 0.78
VPS53-211ENST00000571805 NUPL2O15504 423 aaKnown RBP19.94■□□□□ 0.78
VPS53-211ENST00000571805 KLK3P07288 261 aaPredicted RBP19.94■□□□□ 0.78
VPS53-211ENST00000571805 SSR4P51571 173 aa19.94■□□□□ 0.78
VPS53-211ENST00000571805 NSUN5P2Q63ZY6 315 aa19.94■□□□□ 0.78
VPS53-211ENST00000571805 SLC30A7Q8NEW0 376 aa19.94■□□□□ 0.78
VPS53-211ENST00000571805 MARC2Q969Z3 335 aa19.94■□□□□ 0.78
VPS53-211ENST00000571805 ZNF799Q96GE5 643 aa19.94■□□□□ 0.78
VPS53-211ENST00000571805 KIAA1549Q9HCM3 1950 aa19.94■□□□□ 0.78
VPS53-211ENST00000571805 NAAAQ02083 359 aa19.93■□□□□ 0.78
VPS53-211ENST00000571805 PIGTQ969N2 578 aa19.93■□□□□ 0.78
VPS53-211ENST00000571805 C10orf35Q96D05 121 aa19.93■□□□□ 0.78
VPS53-211ENST00000571805 OR10C1Q96KK4 312 aa19.93■□□□□ 0.78
VPS53-211ENST00000571805 JSRP1Q96MG2 331 aaPredicted RBP19.93■□□□□ 0.78
VPS53-211ENST00000571805 C12orf4Q9NQ89 552 aa19.93■□□□□ 0.78
VPS53-211ENST00000571805 DKKL1Q9UK85 242 aa19.93■□□□□ 0.78
VPS53-211ENST00000571805 CA11O75493 328 aa19.93■□□□□ 0.78
VPS53-211ENST00000571805 CCL4P13236 92 aa19.93■□□□□ 0.78
VPS53-211ENST00000571805 C20orf196Q8IYI0 205 aa19.93■□□□□ 0.78
VPS53-211ENST00000571805 SGK3Q96BR1 496 aa19.93■□□□□ 0.78
VPS53-211ENST00000571805 INTS12Q96CB8 462 aaKnown RBP19.93■□□□□ 0.78
VPS53-211ENST00000571805 PIGQQ9BRB3 760 aa19.93■□□□□ 0.78
VPS53-211ENST00000571805 PLEK2Q9NYT0 353 aa19.93■□□□□ 0.78
VPS53-211ENST00000571805 SDK2Q58EX2 2172 aa19.93■□□□□ 0.78
VPS53-211ENST00000571805 TPT1P13693 172 aaKnown RBP19.92■□□□□ 0.78
VPS53-211ENST00000571805 SNAI3Q3KNW1 292 aa19.92■□□□□ 0.78
VPS53-211ENST00000571805 PRSS54Q6PEW0 395 aa19.92■□□□□ 0.78
VPS53-211ENST00000571805 BAP18Q8IXM2 172 aa19.92■□□□□ 0.78
VPS53-211ENST00000571805 MAML2Q8IZL2 1156 aaPredicted RBP19.92■□□□□ 0.78
VPS53-211ENST00000571805 BOLLQ8N9W6 283 aaKnown RBP19.92■□□□□ 0.78
VPS53-211ENST00000571805 LRRC46Q96FV0 321 aa19.92■□□□□ 0.78
VPS53-211ENST00000571805 SRXN1Q9BYN0 137 aa19.92■□□□□ 0.78
VPS53-211ENST00000571805 ULBP2Q9BZM5 246 aa19.92■□□□□ 0.78
VPS53-211ENST00000571805 TMEM100Q9NV29 134 aa19.92■□□□□ 0.78
VPS53-211ENST00000571805 OR5AC2Q9NZP5 309 aa19.92■□□□□ 0.78
VPS53-211ENST00000571805 MSGN1A6NI15 193 aa19.92■□□□□ 0.78
VPS53-211ENST00000571805 DNASE2O00115 360 aaPredicted RBP19.92■□□□□ 0.78
VPS53-211ENST00000571805 TNFSF11O14788 317 aa19.92■□□□□ 0.78
VPS53-211ENST00000571805 APOC1P02654 83 aa19.92■□□□□ 0.78
VPS53-211ENST00000571805 CPT2P23786 658 aa19.92■□□□□ 0.78
VPS53-211ENST00000571805 RAC1P63000 192 aa19.92■□□□□ 0.78
VPS53-211ENST00000571805 IL15RAQ13261 267 aa19.92■□□□□ 0.78
VPS53-211ENST00000571805 FAM27BQ5VT28 67 aa19.92■□□□□ 0.78
VPS53-211ENST00000571805 IGKV1D-8A0A087WSZ0 117 aa19.91■□□□□ 0.78
VPS53-211ENST00000571805 MTRF1O75570 445 aaKnown RBP19.91■□□□□ 0.78
VPS53-211ENST00000571805 MRPS34P82930 218 aaKnown RBP19.91■□□□□ 0.78
VPS53-211ENST00000571805 MC2RQ01718 297 aa19.91■□□□□ 0.78
VPS53-211ENST00000571805 UQCC3Q6UW78 93 aa19.91■□□□□ 0.78
VPS53-211ENST00000571805 RPS19BP1Q86WX3 136 aaKnown RBP19.91■□□□□ 0.78
VPS53-211ENST00000571805 CCDC36Q8IYA8 594 aa19.91■□□□□ 0.78
VPS53-211ENST00000571805 AGBL5Q8NDL9 886 aa19.91■□□□□ 0.78
VPS53-211ENST00000571805 CCDC54Q8NEL0 328 aa19.91■□□□□ 0.78
VPS53-211ENST00000571805 EMG1Q92979 244 aaKnown RBP19.91■□□□□ 0.78
VPS53-211ENST00000571805 SPTSSAQ969W0 71 aa19.91■□□□□ 0.78
VPS53-211ENST00000571805 NECAB3Q96P71 396 aaPredicted RBP19.91■□□□□ 0.78
VPS53-211ENST00000571805 S100A13Q99584 98 aa19.91■□□□□ 0.78
VPS53-211ENST00000571805 MCTS1Q9ULC4 181 aaKnown RBP19.91■□□□□ 0.78
VPS53-211ENST00000571805 RAB19A4D1S5 217 aa19.91■□□□□ 0.78
VPS53-211ENST00000571805 ZNF84P51523 738 aa19.91■□□□□ 0.78
VPS53-211ENST00000571805 MLF1P58340 268 aa19.91■□□□□ 0.78
VPS53-211ENST00000571805 ARL6IP1Q15041 203 aa19.91■□□□□ 0.78
VPS53-211ENST00000571805 SURF2Q15527 256 aaPredicted RBP19.91■□□□□ 0.78
VPS53-211ENST00000571805 CHRFAM7AQ494W8 412 aa19.91■□□□□ 0.78
VPS53-211ENST00000571805 ZNF468Q5VIY5 522 aaPredicted RBP19.91■□□□□ 0.78
VPS53-211ENST00000571805 C6orf201Q7Z4U5 140 aa19.91■□□□□ 0.78
VPS53-211ENST00000571805 TMEM156Q8N614 296 aa19.91■□□□□ 0.78
VPS53-211ENST00000571805 POC1AQ8NBT0 407 aa19.91■□□□□ 0.78
VPS53-211ENST00000571805 C2orf50Q96LR7 162 aa19.91■□□□□ 0.78
VPS53-211ENST00000571805 ELL3Q9HB65 397 aaPredicted RBP19.91■□□□□ 0.78
VPS53-211ENST00000571805 ASF1BQ9NVP2 202 aa19.91■□□□□ 0.78
VPS53-211ENST00000571805 MASP2O00187 686 aa19.9■□□□□ 0.78
VPS53-211ENST00000571805 CBR3O75828 277 aa19.9■□□□□ 0.78
VPS53-211ENST00000571805 CD79AP11912 226 aa19.9■□□□□ 0.78
VPS53-211ENST00000571805 CRYGSP22914 178 aa19.9■□□□□ 0.78
VPS53-211ENST00000571805 DEFA5Q01523 94 aa19.9■□□□□ 0.78
VPS53-211ENST00000571805 PPA1Q15181 289 aa19.9■□□□□ 0.78
VPS53-211ENST00000571805 OR2Y1Q8NGV0 311 aa19.9■□□□□ 0.78
VPS53-211ENST00000571805 TMEM265A0A087WTH1 108 aa19.9■□□□□ 0.78
VPS53-211ENST00000571805 FIGNL2A6NMB9 653 aa19.9■□□□□ 0.78
VPS53-211ENST00000571805 NTN3O00634 580 aaPredicted RBP19.9■□□□□ 0.78
VPS53-211ENST00000571805 TPD52L2O43399 206 aaKnown RBP19.9■□□□□ 0.78
VPS53-211ENST00000571805 ARHGDIBP52566 201 aa19.9■□□□□ 0.78
VPS53-211ENST00000571805 ZNF775Q96BV0 537 aaPredicted RBP19.9■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms