RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 RARRES2Q99969 163 aa9.64□□□□□ -0.87
CLK3-226ENST00000569406 NDC1Q9BTX1 674 aa9.64□□□□□ -0.87
CLK3-226ENST00000569406 SLC5A7Q9GZV3 580 aa9.64□□□□□ -0.87
CLK3-226ENST00000569406 A0A1W2PNV4 684 aa9.64□□□□□ -0.87
CLK3-226ENST00000569406 GRXCR1A8MXD5 290 aa9.64□□□□□ -0.87
CLK3-226ENST00000569406 C4orf51C9J302 202 aa9.64□□□□□ -0.87
CLK3-226ENST00000569406 WDR1O75083 606 aa9.64□□□□□ -0.87
CLK3-226ENST00000569406 ARL6IP5O75915 188 aa9.64□□□□□ -0.87
CLK3-226ENST00000569406 SSR2P43308 183 aa9.64□□□□□ -0.87
CLK3-226ENST00000569406 IL13RA1P78552 427 aa9.64□□□□□ -0.87
CLK3-226ENST00000569406 ELAVL3Q14576 367 aaKnown RBP9.64□□□□□ -0.87
CLK3-226ENST00000569406 TMEM183BQ1AE95 376 aa9.64□□□□□ -0.87
CLK3-226ENST00000569406 SNAI3Q3KNW1 292 aa9.64□□□□□ -0.87
CLK3-226ENST00000569406 RPUSD3Q6P087 351 aaKnown RBP9.64□□□□□ -0.87
CLK3-226ENST00000569406 TMEM99Q8N816 258 aa9.64□□□□□ -0.87
CLK3-226ENST00000569406 ZNF709Q8N972 641 aa9.64□□□□□ -0.87
CLK3-226ENST00000569406 AGBL5Q8NDL9 886 aa9.64□□□□□ -0.87
CLK3-226ENST00000569406 OR2T27Q8NH04 317 aa9.64□□□□□ -0.87
CLK3-226ENST00000569406 SUSD6Q92537 303 aa9.64□□□□□ -0.87
CLK3-226ENST00000569406 PRSS16Q9NQE7 514 aa9.64□□□□□ -0.87
CLK3-226ENST00000569406 SAP30O75446 220 aa9.63□□□□□ -0.87
CLK3-226ENST00000569406 C1QL1O75973 258 aa9.63□□□□□ -0.87
CLK3-226ENST00000569406 PSMB5P28074 263 aa9.63□□□□□ -0.87
CLK3-226ENST00000569406 BSGP35613 385 aa9.63□□□□□ -0.87
CLK3-226ENST00000569406 FRKP42685 505 aaPredicted RBP9.63□□□□□ -0.87
CLK3-226ENST00000569406 CLDN18P56856 261 aa9.63□□□□□ -0.87
CLK3-226ENST00000569406 MLF2Q15773 248 aaPredicted RBP9.63□□□□□ -0.87
CLK3-226ENST00000569406 SLC26A10Q8NG04 563 aa9.63□□□□□ -0.87
CLK3-226ENST00000569406 CXorf40BQ96DE9 158 aa9.63□□□□□ -0.87
CLK3-226ENST00000569406 CMKLR1Q99788 373 aa9.63□□□□□ -0.87
CLK3-226ENST00000569406 GPA33Q99795 319 aa9.63□□□□□ -0.87
CLK3-226ENST00000569406 SLC25A21Q9BQT8 299 aaPredicted RBP9.63□□□□□ -0.87
CLK3-226ENST00000569406 FOXD3Q9UJU5 478 aaPredicted RBP9.63□□□□□ -0.87
CLK3-226ENST00000569406 A0A1B0GU03 582 aa9.63□□□□□ -0.87
CLK3-226ENST00000569406 GPR37L1O60883 481 aa9.63□□□□□ -0.87
CLK3-226ENST00000569406 TNFSF13O75888 250 aa9.63□□□□□ -0.87
CLK3-226ENST00000569406 CTSDP07339 412 aaPredicted RBP9.63□□□□□ -0.87
CLK3-226ENST00000569406 PF4V1P10720 104 aa9.63□□□□□ -0.87
CLK3-226ENST00000569406 GPR1P46091 355 aa9.63□□□□□ -0.87
CLK3-226ENST00000569406 UCP2P55851 309 aa9.63□□□□□ -0.87
CLK3-226ENST00000569406 MLF1P58340 268 aa9.63□□□□□ -0.87
CLK3-226ENST00000569406 CLEC12BQ2HXU8 276 aa9.63□□□□□ -0.87
CLK3-226ENST00000569406 KIAA0895LQ68EN5 471 aa9.63□□□□□ -0.87
CLK3-226ENST00000569406 AWAT2Q6E213 333 aa9.63□□□□□ -0.87
CLK3-226ENST00000569406 OR4D6Q8NGJ1 314 aa9.63□□□□□ -0.87
CLK3-226ENST00000569406 ZNF479Q96JC4 524 aa9.63□□□□□ -0.87
CLK3-226ENST00000569406 C4orf36Q96KX1 117 aa9.63□□□□□ -0.87
CLK3-226ENST00000569406 CABLES2Q9BTV7 478 aa9.63□□□□□ -0.87
CLK3-226ENST00000569406 ALG12Q9BV10 488 aa9.63□□□□□ -0.87
CLK3-226ENST00000569406 PLA2G2FQ9BZM2 168 aa9.63□□□□□ -0.87
CLK3-226ENST00000569406 CXorf36Q9H7Y0 433 aa9.63□□□□□ -0.87
CLK3-226ENST00000569406 G6PC2Q9NQR9 355 aa9.63□□□□□ -0.87
CLK3-226ENST00000569406 MBNL1Q9NR56 388 aaKnown RBP9.63□□□□□ -0.87
CLK3-226ENST00000569406 SIRT3Q9NTG7 399 aaPredicted RBP9.63□□□□□ -0.87
CLK3-226ENST00000569406 FBXO34Q9NWN3 711 aa9.63□□□□□ -0.87
CLK3-226ENST00000569406 SEC16AO15027 2179 aa9.63□□□□□ -0.87
CLK3-226ENST00000569406 TRAV39A0A0B4J263 110 aa9.63□□□□□ -0.87
CLK3-226ENST00000569406 ZNF891A8MT65 544 aaPredicted RBP9.63□□□□□ -0.87
CLK3-226ENST00000569406 SLC2A10O95528 541 aa9.63□□□□□ -0.87
CLK3-226ENST00000569406 TOMM40O96008 361 aa9.63□□□□□ -0.87
CLK3-226ENST00000569406 PRNPP04156 253 aa9.63□□□□□ -0.87
CLK3-226ENST00000569406 CXCR1P25024 350 aa9.63□□□□□ -0.87
CLK3-226ENST00000569406 SLC25A30Q5SVS4 291 aa9.63□□□□□ -0.87
CLK3-226ENST00000569406 BHLHE23Q8NDY6 225 aa9.63□□□□□ -0.87
CLK3-226ENST00000569406 FGF13Q92913 245 aa9.63□□□□□ -0.87
CLK3-226ENST00000569406 MACROD1Q9BQ69 325 aa9.63□□□□□ -0.87
CLK3-226ENST00000569406 HEATR5AQ86XA9 2040 aa9.62□□□□□ -0.87
CLK3-226ENST00000569406 IGHV2OR16-5A0A0B4J2B6 119 aa9.62□□□□□ -0.87
CLK3-226ENST00000569406 OR4C45A6NMZ5 311 aa9.62□□□□□ -0.87
CLK3-226ENST00000569406 C4orf47A7E2U8 309 aa9.62□□□□□ -0.87
CLK3-226ENST00000569406 TNFSF12O43508 249 aa9.62□□□□□ -0.87
CLK3-226ENST00000569406 TNFSF4P23510 183 aa9.62□□□□□ -0.87
CLK3-226ENST00000569406 RAB38P57729 211 aa9.62□□□□□ -0.87
CLK3-226ENST00000569406 ARF6P62330 175 aa9.62□□□□□ -0.87
CLK3-226ENST00000569406 HIST1H3AP68431 136 aa9.62□□□□□ -0.87
CLK3-226ENST00000569406 OR4A47Q6IF82 309 aa9.62□□□□□ -0.87
CLK3-226ENST00000569406 Q6ZN92 141 aa9.62□□□□□ -0.87
CLK3-226ENST00000569406 TMEM144Q7Z5S9 345 aa9.62□□□□□ -0.87
CLK3-226ENST00000569406 ZNF429Q86V71 674 aa9.62□□□□□ -0.87
CLK3-226ENST00000569406 H1FOOQ8IZA3 346 aaPredicted RBP9.62□□□□□ -0.87
CLK3-226ENST00000569406 EDAQ92838 391 aa9.62□□□□□ -0.87
CLK3-226ENST00000569406 TMEM106AQ96A25 262 aa9.62□□□□□ -0.87
CLK3-226ENST00000569406 SAMD8Q96LT4 415 aa9.62□□□□□ -0.87
CLK3-226ENST00000569406 HINT2Q9BX68 163 aa9.62□□□□□ -0.87
CLK3-226ENST00000569406 GPR174Q9BXC1 333 aa9.62□□□□□ -0.87
CLK3-226ENST00000569406 CLN8Q9UBY8 286 aa9.62□□□□□ -0.87
CLK3-226ENST00000569406 TAC3Q9UHF0 121 aa9.62□□□□□ -0.87
CLK3-226ENST00000569406 ST3GAL6Q9Y274 331 aa9.62□□□□□ -0.87
CLK3-226ENST00000569406 LAMTOR2Q9Y2Q5 125 aa9.62□□□□□ -0.87
CLK3-226ENST00000569406 FEZF1A0PJY2 475 aa9.62□□□□□ -0.87
CLK3-226ENST00000569406 PPP5D1E7EU14 171 aa9.62□□□□□ -0.87
CLK3-226ENST00000569406 FGF17O60258 216 aa9.62□□□□□ -0.87
CLK3-226ENST00000569406 GLIPR1P48060 266 aa9.62□□□□□ -0.87
CLK3-226ENST00000569406 RAB9AP51151 201 aa9.62□□□□□ -0.87
CLK3-226ENST00000569406 HNRNPA3P51991 378 aaKnown RBP9.62□□□□□ -0.87
CLK3-226ENST00000569406 BIDP55957 195 aa9.62□□□□□ -0.87
CLK3-226ENST00000569406 RANP62826 216 aaKnown RBP9.62□□□□□ -0.87
CLK3-226ENST00000569406 EXT1Q16394 746 aa9.62□□□□□ -0.87
CLK3-226ENST00000569406 METRNLQ641Q3 311 aa9.62□□□□□ -0.87
CLK3-226ENST00000569406 ADAMTSL4Q6UY14 1074 aa9.62□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 63.6 ms