RNA–Protein interactions for RNA: ENST00000568642.5

VPS35-209, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-209ENST00000568642 Q6ZPA2 131 aa2.42□□□□□ -2.02
VPS35-209ENST00000568642 PRSS41Q7RTY9 318 aa2.42□□□□□ -2.02
VPS35-209ENST00000568642 FAM19A5Q7Z5A7 132 aaPredicted RBP2.42□□□□□ -2.02
VPS35-209ENST00000568642 CMC1Q7Z7K0 106 aa2.42□□□□□ -2.02
VPS35-209ENST00000568642 MYPOPQ86VE0 399 aaPredicted RBP2.42□□□□□ -2.02
VPS35-209ENST00000568642 CCDC71Q8IV32 467 aaPredicted RBP2.42□□□□□ -2.02
VPS35-209ENST00000568642 DAW1Q8N136 415 aa2.42□□□□□ -2.02
VPS35-209ENST00000568642 SVOPLQ8N434 492 aa2.42□□□□□ -2.02
VPS35-209ENST00000568642 WDR31Q8NA23 367 aa2.42□□□□□ -2.02
VPS35-209ENST00000568642 PXT1Q8NFP0 134 aa2.42□□□□□ -2.02
VPS35-209ENST00000568642 TSTD1Q8NFU3 115 aa2.42□□□□□ -2.02
VPS35-209ENST00000568642 OR6Q1Q8NGQ2 317 aa2.42□□□□□ -2.02
VPS35-209ENST00000568642 OR4C3Q8NH37 302 aa2.42□□□□□ -2.02
VPS35-209ENST00000568642 OR56B4Q8NH76 319 aa2.42□□□□□ -2.02
VPS35-209ENST00000568642 FBXO25Q8TCJ0 367 aa2.42□□□□□ -2.02
VPS35-209ENST00000568642 SFXN5Q8TD22 340 aa2.42□□□□□ -2.02
VPS35-209ENST00000568642 CASTOR1Q8WTX7 329 aa2.42□□□□□ -2.02
VPS35-209ENST00000568642 APH1BQ8WW43 257 aa2.42□□□□□ -2.02
VPS35-209ENST00000568642 HPSE2Q8WWQ2 592 aa2.42□□□□□ -2.02
VPS35-209ENST00000568642 SMIM19Q96E16 107 aa2.42□□□□□ -2.02
VPS35-209ENST00000568642 OMA1Q96E52 524 aa2.42□□□□□ -2.02
VPS35-209ENST00000568642 DYNLL2Q96FJ2 89 aa2.42□□□□□ -2.02
VPS35-209ENST00000568642 ADTRPQ96IZ2 230 aa2.42□□□□□ -2.02
VPS35-209ENST00000568642 ITCHQ96J02 903 aa2.42□□□□□ -2.02
VPS35-209ENST00000568642 FAM210BQ96KR6 192 aa2.42□□□□□ -2.02
VPS35-209ENST00000568642 CEP19Q96LK0 163 aa2.42□□□□□ -2.02
VPS35-209ENST00000568642 CCDC42Q96M95 316 aa2.42□□□□□ -2.02
VPS35-209ENST00000568642 ZNF599Q96NL3 588 aa2.42□□□□□ -2.02
VPS35-209ENST00000568642 OR8B4Q96RC9 309 aa2.42□□□□□ -2.02
VPS35-209ENST00000568642 MCHR1Q99705 422 aa2.42□□□□□ -2.02
VPS35-209ENST00000568642 KIR2DL4Q99706 377 aa2.42□□□□□ -2.02
VPS35-209ENST00000568642 C20orf144Q9BQM9 153 aa2.42□□□□□ -2.02
VPS35-209ENST00000568642 SLC25A33Q9BSK2 321 aa2.42□□□□□ -2.02
VPS35-209ENST00000568642 DCUN1D5Q9BTE7 237 aa2.42□□□□□ -2.02
VPS35-209ENST00000568642 BARHL1Q9BZE3 327 aa2.42□□□□□ -2.02
VPS35-209ENST00000568642 CHIAQ9BZP6 476 aa2.42□□□□□ -2.02
VPS35-209ENST00000568642 IL25Q9H293 177 aa2.42□□□□□ -2.02
VPS35-209ENST00000568642 REEP4Q9H6H4 257 aa2.42□□□□□ -2.02
VPS35-209ENST00000568642 RDH14Q9HBH5 336 aa2.42□□□□□ -2.02
VPS35-209ENST00000568642 PLAC1Q9HBJ0 212 aa2.42□□□□□ -2.02
VPS35-209ENST00000568642 IL1RAPQ9NPH3 570 aa2.42□□□□□ -2.02
VPS35-209ENST00000568642 TIGARQ9NQ88 270 aa2.42□□□□□ -2.02
VPS35-209ENST00000568642 IMPAD1Q9NX62 359 aa2.42□□□□□ -2.02
VPS35-209ENST00000568642 THUMPD1Q9NXG2 353 aaKnown RBP2.42□□□□□ -2.02
VPS35-209ENST00000568642 BFARQ9NZS9 450 aa2.42□□□□□ -2.02
VPS35-209ENST00000568642 VAPAQ9P0L0 249 aa2.42□□□□□ -2.02
VPS35-209ENST00000568642 IL36RNQ9UBH0 155 aa2.42□□□□□ -2.02
VPS35-209ENST00000568642 RSPH14Q9UHP6 348 aa2.42□□□□□ -2.02
VPS35-209ENST00000568642 LGALS13Q9UHV8 139 aa2.42□□□□□ -2.02
VPS35-209ENST00000568642 GNPTGQ9UJJ9 305 aa2.42□□□□□ -2.02
VPS35-209ENST00000568642 KLHL21Q9UJP4 597 aa2.42□□□□□ -2.02
VPS35-209ENST00000568642 VPREB3Q9UKI3 123 aa2.42□□□□□ -2.02
VPS35-209ENST00000568642 KLF12Q9Y4X4 402 aa2.42□□□□□ -2.02
VPS35-209ENST00000568642 POLR3HQ9Y535 204 aaPredicted RBP2.42□□□□□ -2.02
VPS35-209ENST00000568642 SAR1BQ9Y6B6 198 aa2.42□□□□□ -2.02
VPS35-209ENST00000568642 UNC13CQ8NB66 2214 aa2.42□□□□□ -2.02
VPS35-209ENST00000568642 CKAP5Q14008 2032 aa2.42□□□□□ -2.02
VPS35-209ENST00000568642 MDC1Q14676 2089 aaKnown RBP2.41□□□□□ -2.02
VPS35-209ENST00000568642 OBSL1O75147 1896 aa2.41□□□□□ -2.02
VPS35-209ENST00000568642 NUP210Q8TEM1 1887 aaPredicted RBP2.41□□□□□ -2.02
VPS35-209ENST00000568642 IGHV3-20A0A0C4DH32 117 aa2.41□□□□□ -2.02
VPS35-209ENST00000568642 A0A1B0GVT2 93 aa2.41□□□□□ -2.02
VPS35-209ENST00000568642 SMIM9A6NGZ8 99 aa2.41□□□□□ -2.02
VPS35-209ENST00000568642 ZNF729A6NN14 1252 aaPredicted RBP2.41□□□□□ -2.02
VPS35-209ENST00000568642 HACD1B0YJ81 288 aa2.41□□□□□ -2.02
VPS35-209ENST00000568642 INAFM1C9JVW0 142 aa2.41□□□□□ -2.02
VPS35-209ENST00000568642 G3V2L1 256 aa2.41□□□□□ -2.02
VPS35-209ENST00000568642 SLC1A7O00341 560 aa2.41□□□□□ -2.02
VPS35-209ENST00000568642 NME4O00746 187 aa2.41□□□□□ -2.02
VPS35-209ENST00000568642 SLC16A4O15374 487 aa2.41□□□□□ -2.02
VPS35-209ENST00000568642 TYROBPO43914 113 aa2.41□□□□□ -2.02
VPS35-209ENST00000568642 ZNF623O75123 536 aa2.41□□□□□ -2.02
VPS35-209ENST00000568642 DHFRP00374 187 aa2.41□□□□□ -2.02
VPS35-209ENST00000568642 TSHBP01222 138 aa2.41□□□□□ -2.02
VPS35-209ENST00000568642 IGHV3-9P01782 118 aa2.41□□□□□ -2.02
VPS35-209ENST00000568642 RHOCP08134 193 aa2.41□□□□□ -2.02
VPS35-209ENST00000568642 GSTA1P08263 222 aa2.41□□□□□ -2.02
VPS35-209ENST00000568642 ACSM4P0C7M7 580 aa2.41□□□□□ -2.02
VPS35-209ENST00000568642 ZDHHC11BP0C7U3 371 aa2.41□□□□□ -2.02
VPS35-209ENST00000568642 OCM2P0CE71 109 aa2.41□□□□□ -2.02
VPS35-209ENST00000568642 PET100P0DJ07 73 aa2.41□□□□□ -2.02
VPS35-209ENST00000568642 THRAP10827 490 aa2.41□□□□□ -2.02
VPS35-209ENST00000568642 SLC2A1P11166 492 aa2.41□□□□□ -2.02
VPS35-209ENST00000568642 PSG1P11464 419 aa2.41□□□□□ -2.02
VPS35-209ENST00000568642 ZNF250P15622 560 aa2.41□□□□□ -2.02
VPS35-209ENST00000568642 ZNF12P17014 697 aa2.41□□□□□ -2.02
VPS35-209ENST00000568642 IGFBP5P24593 272 aa2.41□□□□□ -2.02
VPS35-209ENST00000568642 KRTAP5-9P26371 169 aa2.41□□□□□ -2.02
VPS35-209ENST00000568642 SERPINB1P30740 379 aa2.41□□□□□ -2.02
VPS35-209ENST00000568642 CD52P31358 61 aa2.41□□□□□ -2.02
VPS35-209ENST00000568642 GPX4P36969 197 aaPredicted RBP2.41□□□□□ -2.02
VPS35-209ENST00000568642 PMELP40967 661 aa2.41□□□□□ -2.02
VPS35-209ENST00000568642 GLP1RP43220 463 aa2.41□□□□□ -2.02
VPS35-209ENST00000568642 GSSP48637 474 aa2.41□□□□□ -2.02
VPS35-209ENST00000568642 AMTP48728 403 aa2.41□□□□□ -2.02
VPS35-209ENST00000568642 PDLIM4P50479 330 aa2.41□□□□□ -2.02
VPS35-209ENST00000568642 SSR4P51571 173 aa2.41□□□□□ -2.02
VPS35-209ENST00000568642 HNRNPA3P51991 378 aaKnown RBP2.41□□□□□ -2.02
VPS35-209ENST00000568642 CRYBA4P53673 196 aa2.41□□□□□ -2.02
VPS35-209ENST00000568642 UGT2B15P54855 530 aa2.41□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 57.9 ms