RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 GUCA2AQ02747 115 aa13.2□□□□□ -0.3
CLN3-229ENST00000567963 KRT74Q7RTS7 529 aa13.2□□□□□ -0.3
CLN3-229ENST00000567963 ZDHHC23Q8IYP9 409 aa13.2□□□□□ -0.3
CLN3-229ENST00000567963 BBS1Q8NFJ9 593 aa13.2□□□□□ -0.3
CLN3-229ENST00000567963 H1FXQ92522 213 aaKnown RBP13.2□□□□□ -0.3
CLN3-229ENST00000567963 MED30Q96HR3 178 aa13.2□□□□□ -0.3
CLN3-229ENST00000567963 GAFA1Q96PS6 74 aa13.2□□□□□ -0.3
CLN3-229ENST00000567963 SEMA6AQ9H2E6 1030 aa13.2□□□□□ -0.3
CLN3-229ENST00000567963 LAMP5Q9UJQ1 280 aa13.2□□□□□ -0.3
CLN3-229ENST00000567963 CAB39Q9Y376 341 aaPredicted RBP13.2□□□□□ -0.3
CLN3-229ENST00000567963 E2F6O75461 281 aa13.19□□□□□ -0.3
CLN3-229ENST00000567963 TFF1P04155 84 aa13.19□□□□□ -0.3
CLN3-229ENST00000567963 ACAA1P09110 424 aaPredicted RBP13.19□□□□□ -0.3
CLN3-229ENST00000567963 FBP1P09467 338 aa13.19□□□□□ -0.3
CLN3-229ENST00000567963 ANXA8P13928 327 aa13.19□□□□□ -0.3
CLN3-229ENST00000567963 HOXB6P17509 224 aaKnown RBP13.19□□□□□ -0.3
CLN3-229ENST00000567963 GPM6AP51674 278 aa13.19□□□□□ -0.3
CLN3-229ENST00000567963 DLX1P56177 255 aa13.19□□□□□ -0.3
CLN3-229ENST00000567963 RPS7P62081 194 aaKnown RBP13.19□□□□□ -0.3
CLN3-229ENST00000567963 PRB3Q04118 309 aaPredicted RBP13.19□□□□□ -0.3
CLN3-229ENST00000567963 DGUOKQ16854 277 aa13.19□□□□□ -0.3
CLN3-229ENST00000567963 TMEM236Q5W0B7 351 aa13.19□□□□□ -0.3
CLN3-229ENST00000567963 GDPGP1Q6ZNW5 385 aa13.19□□□□□ -0.3
CLN3-229ENST00000567963 C1orf122Q6ZSJ8 110 aa13.19□□□□□ -0.3
CLN3-229ENST00000567963 KRT77Q7Z794 578 aa13.19□□□□□ -0.3
CLN3-229ENST00000567963 ZSCAN4Q8NAM6 433 aaPredicted RBP13.19□□□□□ -0.3
CLN3-229ENST00000567963 LRTOMTQ8WZ04 291 aa13.19□□□□□ -0.3
CLN3-229ENST00000567963 TNFRSF14Q92956 283 aa13.19□□□□□ -0.3
CLN3-229ENST00000567963 HIST1H2AAQ96QV6 131 aa13.19□□□□□ -0.3
CLN3-229ENST00000567963 ZNRD1Q9P1U0 126 aa13.19□□□□□ -0.3
CLN3-229ENST00000567963 SLC25A10Q9UBX3 287 aaPredicted RBP13.19□□□□□ -0.3
CLN3-229ENST00000567963 VWFP04275 2813 aa13.19□□□□□ -0.3
CLN3-229ENST00000567963 ZNF816-ZNF321PA0A0X1KG74 233 aa13.18□□□□□ -0.3
CLN3-229ENST00000567963 NKX6-3A6NJ46 265 aa13.18□□□□□ -0.3
CLN3-229ENST00000567963 OR2AT4A6NND4 320 aa13.18□□□□□ -0.3
CLN3-229ENST00000567963 SIGLEC5O15389 551 aa13.18□□□□□ -0.3
CLN3-229ENST00000567963 RHBDL1O75783 438 aa13.18□□□□□ -0.3
CLN3-229ENST00000567963 CLPXO76031 633 aa13.18□□□□□ -0.3
CLN3-229ENST00000567963 GLRA1P23415 457 aa13.18□□□□□ -0.3
CLN3-229ENST00000567963 EEF1B2P24534 225 aaKnown RBP13.18□□□□□ -0.3
CLN3-229ENST00000567963 MAP2K3P46734 347 aa13.18□□□□□ -0.3
CLN3-229ENST00000567963 CAV3P56539 151 aa13.18□□□□□ -0.3
CLN3-229ENST00000567963 TAF9Q16594 264 aa13.18□□□□□ -0.3
CLN3-229ENST00000567963 CEACAM21Q3KPI0 293 aa13.18□□□□□ -0.3
CLN3-229ENST00000567963 PDLIM3Q53GG5 364 aaPredicted RBP13.18□□□□□ -0.3
CLN3-229ENST00000567963 DEGS2Q6QHC5 323 aa13.18□□□□□ -0.3
CLN3-229ENST00000567963 YIPF3Q9GZM5 350 aa13.18□□□□□ -0.3
CLN3-229ENST00000567963 OR51I2Q9H344 312 aa13.18□□□□□ -0.3
CLN3-229ENST00000567963 FAM206AQ9NX38 181 aa13.18□□□□□ -0.3
CLN3-229ENST00000567963 NLKQ9UBE8 527 aa13.18□□□□□ -0.3
CLN3-229ENST00000567963 A0A0U1RQV5 110 aa13.17□□□□□ -0.3
CLN3-229ENST00000567963 TMEM269A0A1B0GVZ9 245 aa13.17□□□□□ -0.3
CLN3-229ENST00000567963 ACOD1A6NK06 481 aa13.17□□□□□ -0.3
CLN3-229ENST00000567963 TIMM23O14925 209 aa13.17□□□□□ -0.3
CLN3-229ENST00000567963 NPFFO15130 113 aa13.17□□□□□ -0.3
CLN3-229ENST00000567963 PROK1P58294 105 aa13.17□□□□□ -0.3
CLN3-229ENST00000567963 GNG3P63215 75 aa13.17□□□□□ -0.3
CLN3-229ENST00000567963 KLRD1Q13241 179 aa13.17□□□□□ -0.3
CLN3-229ENST00000567963 APOFQ13790 326 aa13.17□□□□□ -0.3
CLN3-229ENST00000567963 CEP78Q5JTW2 689 aa13.17□□□□□ -0.3
CLN3-229ENST00000567963 KCTD18Q6PI47 426 aaPredicted RBP13.17□□□□□ -0.3
CLN3-229ENST00000567963 Q6ZSV7 163 aa13.17□□□□□ -0.3
CLN3-229ENST00000567963 PAPD5Q8NDF8 572 aaKnown RBP13.17□□□□□ -0.3
CLN3-229ENST00000567963 FAM81AQ8TBF8 368 aa13.17□□□□□ -0.3
CLN3-229ENST00000567963 ITFG2Q969R8 447 aa13.17□□□□□ -0.3
CLN3-229ENST00000567963 TEAD3Q99594 435 aa13.17□□□□□ -0.3
CLN3-229ENST00000567963 TEX12Q9BXU0 123 aa13.17□□□□□ -0.3
CLN3-229ENST00000567963 MROQ9BYG7 248 aa13.17□□□□□ -0.3
CLN3-229ENST00000567963 SLC25A19Q9HC21 320 aa13.17□□□□□ -0.3
CLN3-229ENST00000567963 A0A1W2PRD5 423 aa13.16□□□□□ -0.3
CLN3-229ENST00000567963 A0A1W2PRF3 423 aa13.16□□□□□ -0.3
CLN3-229ENST00000567963 A0A1W2PRM7 423 aa13.16□□□□□ -0.3
CLN3-229ENST00000567963 ZNF732B4DXR9 585 aa13.16□□□□□ -0.3
CLN3-229ENST00000567963 M0QZ24 198 aa13.16□□□□□ -0.3
CLN3-229ENST00000567963 M0R1W7 72 aa13.16□□□□□ -0.3
CLN3-229ENST00000567963 PSMD9O00233 223 aa13.16□□□□□ -0.3
CLN3-229ENST00000567963 NDUFB7P17568 137 aa13.16□□□□□ -0.3
CLN3-229ENST00000567963 GABRA2P47869 451 aa13.16□□□□□ -0.3
CLN3-229ENST00000567963 UBE2E1P51965 193 aa13.16□□□□□ -0.3
CLN3-229ENST00000567963 CBX1P83916 185 aa13.16□□□□□ -0.3
CLN3-229ENST00000567963 SNAPC1Q16533 368 aa13.16□□□□□ -0.3
CLN3-229ENST00000567963 MIDNQ504T8 468 aa13.16□□□□□ -0.3
CLN3-229ENST00000567963 ASPHD2Q6ICH7 369 aa13.16□□□□□ -0.3
CLN3-229ENST00000567963 TRPM8Q7Z2W7 1104 aa13.16□□□□□ -0.3
CLN3-229ENST00000567963 ZNRF1Q8ND25 227 aa13.16□□□□□ -0.3
CLN3-229ENST00000567963 OR5A2Q8NGI9 324 aa13.16□□□□□ -0.3
CLN3-229ENST00000567963 BCAS4Q8TDM0 211 aa13.16□□□□□ -0.3
CLN3-229ENST00000567963 C16orf95Q9H693 158 aa13.16□□□□□ -0.3
CLN3-229ENST00000567963 METTL8Q9H825 291 aaKnown RBP13.16□□□□□ -0.3
CLN3-229ENST00000567963 VPREB3Q9UKI3 123 aa13.16□□□□□ -0.3
CLN3-229ENST00000567963 MAB21L2Q9Y586 359 aa13.16□□□□□ -0.3
CLN3-229ENST00000567963 IGKV1D-17A0A075B6S4 117 aa13.16□□□□□ -0.3
CLN3-229ENST00000567963 A0A1W2PQ09 198 aa13.16□□□□□ -0.3
CLN3-229ENST00000567963 MEIOCA2RUB1 952 aa13.16□□□□□ -0.3
CLN3-229ENST00000567963 BTBD17A6NE02 478 aa13.16□□□□□ -0.3
CLN3-229ENST00000567963 PSG2P11465 335 aa13.16□□□□□ -0.3
CLN3-229ENST00000567963 ATP6V1B1P15313 513 aa13.16□□□□□ -0.3
CLN3-229ENST00000567963 DMRTC1Q5HYR2 192 aa13.16□□□□□ -0.3
CLN3-229ENST00000567963 SPATA24Q86W54 205 aa13.16□□□□□ -0.3
CLN3-229ENST00000567963 ZNF679Q8IYX0 411 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 51.4 ms