RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 MED30Q96HR3 178 aa13.77□□□□□ -0.21
CLN3-211ENST00000564091 LYZL4Q96KX0 146 aa13.77□□□□□ -0.21
CLN3-211ENST00000564091 METTL8Q9H825 291 aaKnown RBP13.77□□□□□ -0.21
CLN3-211ENST00000564091 REEP1Q9H902 201 aa13.77□□□□□ -0.21
CLN3-211ENST00000564091 ACTR3BQ9P1U1 418 aa13.77□□□□□ -0.21
CLN3-211ENST00000564091 M0R1W7 72 aa13.76□□□□□ -0.21
CLN3-211ENST00000564091 SELENOFO60613 162 aa13.76□□□□□ -0.21
CLN3-211ENST00000564091 RHBDL1O75783 438 aa13.76□□□□□ -0.21
CLN3-211ENST00000564091 ACAA1P09110 424 aaPredicted RBP13.76□□□□□ -0.21
CLN3-211ENST00000564091 ACSM1Q08AH1 577 aa13.76□□□□□ -0.21
CLN3-211ENST00000564091 SNCBQ16143 134 aa13.76□□□□□ -0.21
CLN3-211ENST00000564091 NCR3LG1Q68D85 454 aa13.76□□□□□ -0.21
CLN3-211ENST00000564091 OR2T5Q6IEZ7 315 aa13.76□□□□□ -0.21
CLN3-211ENST00000564091 HCP5Q6MZN7 132 aa13.76□□□□□ -0.21
CLN3-211ENST00000564091 CPLX4Q7Z7G2 160 aa13.76□□□□□ -0.21
CLN3-211ENST00000564091 ZNRF1Q8ND25 227 aa13.76□□□□□ -0.21
CLN3-211ENST00000564091 BEND2Q8NDZ0 799 aa13.76□□□□□ -0.21
CLN3-211ENST00000564091 OR10G2Q8NGC3 310 aa13.76□□□□□ -0.21
CLN3-211ENST00000564091 OR2T29Q8NH02 315 aa13.76□□□□□ -0.21
CLN3-211ENST00000564091 SSX3Q99909 188 aa13.76□□□□□ -0.21
CLN3-211ENST00000564091 NLKQ9UBE8 527 aa13.76□□□□□ -0.21
CLN3-211ENST00000564091 FBLN5Q9UBX5 448 aa13.76□□□□□ -0.21
CLN3-211ENST00000564091 MAB21L2Q9Y586 359 aa13.76□□□□□ -0.21
CLN3-211ENST00000564091 IGKV1D-17A0A075B6S4 117 aa13.75□□□□□ -0.21
CLN3-211ENST00000564091 OR2AT4A6NND4 320 aa13.75□□□□□ -0.21
CLN3-211ENST00000564091 G3V4G9 280 aa13.75□□□□□ -0.21
CLN3-211ENST00000564091 H3BN98 237 aa13.75□□□□□ -0.21
CLN3-211ENST00000564091 LYNP07948 512 aa13.75□□□□□ -0.21
CLN3-211ENST00000564091 GLRA1P23415 457 aa13.75□□□□□ -0.21
CLN3-211ENST00000564091 DCTDP32321 178 aa13.75□□□□□ -0.21
CLN3-211ENST00000564091 GPM6AP51674 278 aa13.75□□□□□ -0.21
CLN3-211ENST00000564091 CAV3P56539 151 aa13.75□□□□□ -0.21
CLN3-211ENST00000564091 BLMHQ13867 455 aa13.75□□□□□ -0.21
CLN3-211ENST00000564091 HERPUD1Q15011 391 aa13.75□□□□□ -0.21
CLN3-211ENST00000564091 SPATS1Q496A3 300 aa13.75□□□□□ -0.21
CLN3-211ENST00000564091 DMRTC1Q5HYR2 192 aa13.75□□□□□ -0.21
CLN3-211ENST00000564091 PLBD1Q6P4A8 553 aa13.75□□□□□ -0.21
CLN3-211ENST00000564091 Q6ZTK2 550 aa13.75□□□□□ -0.21
CLN3-211ENST00000564091 ZDHHC23Q8IYP9 409 aa13.75□□□□□ -0.21
CLN3-211ENST00000564091 OR8B12Q8NGG6 310 aa13.75□□□□□ -0.21
CLN3-211ENST00000564091 OTOSQ8NHW6 89 aa13.75□□□□□ -0.21
CLN3-211ENST00000564091 TEX47Q8TBZ9 253 aa13.75□□□□□ -0.21
CLN3-211ENST00000564091 AJUBAQ96IF1 538 aa13.75□□□□□ -0.21
CLN3-211ENST00000564091 HIST1H2AAQ96QV6 131 aa13.75□□□□□ -0.21
CLN3-211ENST00000564091 FOXJ3Q9UPW0 622 aa13.75□□□□□ -0.21
CLN3-211ENST00000564091 KLHDC2Q9Y2U9 406 aa13.75□□□□□ -0.21
CLN3-211ENST00000564091 SF3B6Q9Y3B4 125 aaKnown RBP13.75□□□□□ -0.21
CLN3-211ENST00000564091 H0YAE9 185 aa13.74□□□□□ -0.21
CLN3-211ENST00000564091 ANGPTL7O43827 346 aa13.74□□□□□ -0.21
CLN3-211ENST00000564091 PSG2P11465 335 aa13.74□□□□□ -0.21
CLN3-211ENST00000564091 CEP78Q5JTW2 689 aa13.74□□□□□ -0.21
CLN3-211ENST00000564091 CD300LDQ6UXZ3 194 aa13.74□□□□□ -0.21
CLN3-211ENST00000564091 FAM185AQ8N0U4 392 aa13.74□□□□□ -0.21
CLN3-211ENST00000564091 TMEM185AQ8NFB2 350 aa13.74□□□□□ -0.21
CLN3-211ENST00000564091 OR51G2Q8NGK0 314 aa13.74□□□□□ -0.21
CLN3-211ENST00000564091 FEVQ99581 238 aa13.74□□□□□ -0.21
CLN3-211ENST00000564091 MAGIXQ9H6Y5 334 aa13.74□□□□□ -0.21
CLN3-211ENST00000564091 YY1AP1Q9H869 796 aa13.74□□□□□ -0.21
CLN3-211ENST00000564091 ABCB9Q9NP78 766 aa13.74□□□□□ -0.21
CLN3-211ENST00000564091 NDE1Q9NXR1 346 aa13.74□□□□□ -0.21
CLN3-211ENST00000564091 ZNF222Q9UK12 451 aa13.74□□□□□ -0.21
CLN3-211ENST00000564091 ZNF732B4DXR9 585 aa13.73□□□□□ -0.21
CLN3-211ENST00000564091 PRB2P02812 416 aaPredicted RBP13.73□□□□□ -0.21
CLN3-211ENST00000564091 EFNB2P52799 333 aa13.73□□□□□ -0.21
CLN3-211ENST00000564091 MS4A2Q01362 244 aa13.73□□□□□ -0.21
CLN3-211ENST00000564091 DHFR2Q86XF0 187 aa13.73□□□□□ -0.21
CLN3-211ENST00000564091 ZNF454Q8N9F8 522 aa13.73□□□□□ -0.21
CLN3-211ENST00000564091 OR51I2Q9H344 312 aa13.73□□□□□ -0.21
CLN3-211ENST00000564091 PRR23D1E9PI22 279 aaPredicted RBP13.72□□□□□ -0.21
CLN3-211ENST00000564091 PRR23D2P0DMB1 279 aaPredicted RBP13.72□□□□□ -0.21
CLN3-211ENST00000564091 PAICSP22234 425 aaKnown RBP13.72□□□□□ -0.21
CLN3-211ENST00000564091 KIR2DS4P43632 304 aa13.72□□□□□ -0.21
CLN3-211ENST00000564091 CAPZA1P52907 286 aa13.72□□□□□ -0.21
CLN3-211ENST00000564091 HCCSP53701 268 aa13.72□□□□□ -0.21
CLN3-211ENST00000564091 PSMA6P60900 246 aaKnown RBP13.72□□□□□ -0.21
CLN3-211ENST00000564091 GINS1Q14691 196 aa13.72□□□□□ -0.21
CLN3-211ENST00000564091 BEAN1Q3B7T3 259 aa13.72□□□□□ -0.21
CLN3-211ENST00000564091 FAM98BQ52LJ0 330 aaKnown RBP13.72□□□□□ -0.21
CLN3-211ENST00000564091 LCN8Q6JVE9 175 aa13.72□□□□□ -0.21
CLN3-211ENST00000564091 MKXQ8IYA7 352 aa13.72□□□□□ -0.21
CLN3-211ENST00000564091 OR5D13Q8NGL4 314 aa13.72□□□□□ -0.21
CLN3-211ENST00000564091 OR4C13Q8NGP0 309 aa13.72□□□□□ -0.21
CLN3-211ENST00000564091 FAM81AQ8TBF8 368 aa13.72□□□□□ -0.21
CLN3-211ENST00000564091 GIPC3Q8TF64 312 aa13.72□□□□□ -0.21
CLN3-211ENST00000564091 FAM234AQ9H0X4 552 aa13.72□□□□□ -0.21
CLN3-211ENST00000564091 C19orf12Q9NSK7 152 aa13.72□□□□□ -0.21
CLN3-211ENST00000564091 ARL2BPQ9Y2Y0 163 aa13.72□□□□□ -0.21
CLN3-211ENST00000564091 NOTCH3Q9UM47 2321 aa13.72□□□□□ -0.21
CLN3-211ENST00000564091 TRBV23-1A0A0A0MS06 115 aa13.71□□□□□ -0.21
CLN3-211ENST00000564091 B2RBV5 119 aa13.71□□□□□ -0.21
CLN3-211ENST00000564091 PSMD9O00233 223 aa13.71□□□□□ -0.21
CLN3-211ENST00000564091 OPN1MWP04001 364 aa13.71□□□□□ -0.21
CLN3-211ENST00000564091 OPN1MW2P0DN77 364 aa13.71□□□□□ -0.21
CLN3-211ENST00000564091 OPN1MW3P0DN78 364 aa13.71□□□□□ -0.21
CLN3-211ENST00000564091 ERVFRD-1P60508 538 aa13.71□□□□□ -0.21
CLN3-211ENST00000564091 GNG3P63215 75 aa13.71□□□□□ -0.21
CLN3-211ENST00000564091 LRRC75BQ2VPJ9 315 aa13.71□□□□□ -0.21
CLN3-211ENST00000564091 CPOQ8IVL8 374 aa13.71□□□□□ -0.21
CLN3-211ENST00000564091 KLHDC1Q8N7A1 406 aa13.71□□□□□ -0.21
CLN3-211ENST00000564091 PAPD5Q8NDF8 572 aaKnown RBP13.71□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 68.6 ms