RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 ASCL4Q6XD76 172 aa6.54□□□□□ -1.36
VPS39-204ENST00000561818 WDFY1Q8IWB7 410 aa6.54□□□□□ -1.36
VPS39-204ENST00000561818 SPICQ8N5J4 248 aa6.54□□□□□ -1.36
VPS39-204ENST00000561818 ZBTB8BQ8NAP8 495 aaPredicted RBP6.54□□□□□ -1.36
VPS39-204ENST00000561818 CHST4Q8NCG5 386 aa6.54□□□□□ -1.36
VPS39-204ENST00000561818 OR51T1Q8NGJ9 327 aa6.54□□□□□ -1.36
VPS39-204ENST00000561818 GIMAP1Q8WWP7 306 aa6.54□□□□□ -1.36
VPS39-204ENST00000561818 BCL2L2Q92843 193 aaPredicted RBP6.54□□□□□ -1.36
VPS39-204ENST00000561818 DACT3Q96B18 629 aaPredicted RBP6.54□□□□□ -1.36
VPS39-204ENST00000561818 SEH1LQ96EE3 360 aa6.54□□□□□ -1.36
VPS39-204ENST00000561818 POM121L2Q96KW2 1035 aa6.54□□□□□ -1.36
VPS39-204ENST00000561818 GPR137Q96N19 417 aa6.54□□□□□ -1.36
VPS39-204ENST00000561818 GINS4Q9BRT9 223 aa6.54□□□□□ -1.36
VPS39-204ENST00000561818 COL25A1Q9BXS0 654 aaPredicted RBP6.54□□□□□ -1.36
VPS39-204ENST00000561818 DEFB127Q9H1M4 99 aa6.54□□□□□ -1.36
VPS39-204ENST00000561818 MMP28Q9H239 520 aa6.54□□□□□ -1.36
VPS39-204ENST00000561818 NOX3Q9HBY0 568 aa6.54□□□□□ -1.36
VPS39-204ENST00000561818 NPDC1Q9NQX5 325 aaPredicted RBP6.54□□□□□ -1.36
VPS39-204ENST00000561818 PLSCR4Q9NRQ2 329 aa6.54□□□□□ -1.36
VPS39-204ENST00000561818 FAM86C1Q9NVL1 165 aa6.54□□□□□ -1.36
VPS39-204ENST00000561818 PLA2G2EQ9NZK7 142 aa6.54□□□□□ -1.36
VPS39-204ENST00000561818 ZNF224Q9NZL3 707 aa6.54□□□□□ -1.36
VPS39-204ENST00000561818 SPRR3Q9UBC9 169 aa6.54□□□□□ -1.36
VPS39-204ENST00000561818 CGGBP1Q9UFW8 167 aaPredicted RBP6.54□□□□□ -1.36
VPS39-204ENST00000561818 ANAPC10Q9UM13 185 aa6.54□□□□□ -1.36
VPS39-204ENST00000561818 PROCRQ9UNN8 238 aa6.54□□□□□ -1.36
VPS39-204ENST00000561818 MSRB2Q9Y3D2 182 aa6.54□□□□□ -1.36
VPS39-204ENST00000561818 ALG5Q9Y673 324 aa6.54□□□□□ -1.36
VPS39-204ENST00000561818 PTPRBP23467 1997 aa6.54□□□□□ -1.36
VPS39-204ENST00000561818 MUC3AQ02505 3323 aa6.54□□□□□ -1.36
VPS39-204ENST00000561818 C5orf49A4QMS7 147 aa6.53□□□□□ -1.36
VPS39-204ENST00000561818 MASP2O00187 686 aa6.53□□□□□ -1.36
VPS39-204ENST00000561818 PRRG2O14669 202 aa6.53□□□□□ -1.36
VPS39-204ENST00000561818 RAD51DO75771 328 aa6.53□□□□□ -1.36
VPS39-204ENST00000561818 GIPP09681 153 aaPredicted RBP6.53□□□□□ -1.36
VPS39-204ENST00000561818 CTXN2P0C2S0 81 aa6.53□□□□□ -1.36
VPS39-204ENST00000561818 RAC2P15153 192 aa6.53□□□□□ -1.36
VPS39-204ENST00000561818 CBR1P16152 277 aa6.53□□□□□ -1.36
VPS39-204ENST00000561818 FAHP16930 419 aa6.53□□□□□ -1.36
VPS39-204ENST00000561818 KLK2P20151 261 aa6.53□□□□□ -1.36
VPS39-204ENST00000561818 BTCP35070 178 aa6.53□□□□□ -1.36
VPS39-204ENST00000561818 RFC3P40938 356 aa6.53□□□□□ -1.36
VPS39-204ENST00000561818 OR3A3P47888 321 aa6.53□□□□□ -1.36
VPS39-204ENST00000561818 SEC61A1P61619 476 aaKnown RBP6.53□□□□□ -1.36
VPS39-204ENST00000561818 GNG3P63215 75 aa6.53□□□□□ -1.36
VPS39-204ENST00000561818 DBPQ10586 325 aaPredicted RBP6.53□□□□□ -1.36
VPS39-204ENST00000561818 ARFRP1Q13795 201 aa6.53□□□□□ -1.36
VPS39-204ENST00000561818 GRK1Q15835 563 aa6.53□□□□□ -1.36
VPS39-204ENST00000561818 SNAI3Q3KNW1 292 aa6.53□□□□□ -1.36
VPS39-204ENST00000561818 CDNFQ49AH0 187 aa6.53□□□□□ -1.36
VPS39-204ENST00000561818 ATP1A1-AS1Q5TC04 95 aa6.53□□□□□ -1.36
VPS39-204ENST00000561818 PLCXD3Q63HM9 321 aa6.53□□□□□ -1.36
VPS39-204ENST00000561818 ELP2Q6IA86 826 aa6.53□□□□□ -1.36
VPS39-204ENST00000561818 GLDNQ6ZMI3 551 aaPredicted RBP6.53□□□□□ -1.36
VPS39-204ENST00000561818 TRAPPC6BQ86SZ2 158 aa6.53□□□□□ -1.36
VPS39-204ENST00000561818 PEG10Q86TG7 708 aaKnown RBP6.53□□□□□ -1.36
VPS39-204ENST00000561818 NOXA1Q86UR1 476 aa6.53□□□□□ -1.36
VPS39-204ENST00000561818 OSR2Q8N2R0 312 aa6.53□□□□□ -1.36
VPS39-204ENST00000561818 SLC30A7Q8NEW0 376 aa6.53□□□□□ -1.36
VPS39-204ENST00000561818 Q8NFD4 153 aa6.53□□□□□ -1.36
VPS39-204ENST00000561818 OR4C16Q8NGL9 310 aa6.53□□□□□ -1.36
VPS39-204ENST00000561818 RELTQ969Z4 430 aa6.53□□□□□ -1.36
VPS39-204ENST00000561818 LYZL4Q96KX0 146 aa6.53□□□□□ -1.36
VPS39-204ENST00000561818 TRIB1Q96RU8 372 aa6.53□□□□□ -1.36
VPS39-204ENST00000561818 MICU1Q9BPX6 476 aa6.53□□□□□ -1.36
VPS39-204ENST00000561818 RTL8AQ9BWD3 113 aa6.53□□□□□ -1.36
VPS39-204ENST00000561818 PAPOLGQ9BWT3 736 aaKnown RBP6.53□□□□□ -1.36
VPS39-204ENST00000561818 GON7Q9BXV9 100 aa6.53□□□□□ -1.36
VPS39-204ENST00000561818 PKIBQ9C010 78 aa6.53□□□□□ -1.36
VPS39-204ENST00000561818 LPAR5Q9H1C0 372 aa6.53□□□□□ -1.36
VPS39-204ENST00000561818 TP63Q9H3D4 680 aaPredicted RBP6.53□□□□□ -1.36
VPS39-204ENST00000561818 GHITMQ9H3K2 345 aa6.53□□□□□ -1.36
VPS39-204ENST00000561818 ELL3Q9HB65 397 aaPredicted RBP6.53□□□□□ -1.36
VPS39-204ENST00000561818 PLEKHJ1Q9NW61 149 aa6.53□□□□□ -1.36
VPS39-204ENST00000561818 KLK11Q9UBX7 282 aa6.53□□□□□ -1.36
VPS39-204ENST00000561818 SLC23A1Q9UHI7 598 aa6.53□□□□□ -1.36
VPS39-204ENST00000561818 GLS2Q9UI32 602 aa6.53□□□□□ -1.36
VPS39-204ENST00000561818 RHBDD3Q9Y3P4 386 aa6.53□□□□□ -1.36
VPS39-204ENST00000561818 N6AMT1Q9Y5N5 214 aa6.53□□□□□ -1.36
VPS39-204ENST00000561818 PCSK5Q92824 1860 aa6.52□□□□□ -1.37
VPS39-204ENST00000561818 IGKV1-9A0A0C4DH69 117 aa6.52□□□□□ -1.37
VPS39-204ENST00000561818 TMEM82A0PJX8 343 aa6.52□□□□□ -1.37
VPS39-204ENST00000561818 CEACAM18A8MTB9 384 aa6.52□□□□□ -1.37
VPS39-204ENST00000561818 K7ENP7 123 aa6.52□□□□□ -1.37
VPS39-204ENST00000561818 MFNGO00587 321 aa6.52□□□□□ -1.37
VPS39-204ENST00000561818 LANCL1O43813 399 aa6.52□□□□□ -1.37
VPS39-204ENST00000561818 DIRAS3O95661 229 aa6.52□□□□□ -1.37
VPS39-204ENST00000561818 MT-ND4P03905 459 aa6.52□□□□□ -1.37
VPS39-204ENST00000561818 AMY2AP04746 511 aa6.52□□□□□ -1.37
VPS39-204ENST00000561818 ADRB1P08588 477 aa6.52□□□□□ -1.37
VPS39-204ENST00000561818 ACAA1P09110 424 aaPredicted RBP6.52□□□□□ -1.37
VPS39-204ENST00000561818 SPNP16150 400 aa6.52□□□□□ -1.37
VPS39-204ENST00000561818 S100GP29377 79 aa6.52□□□□□ -1.37
VPS39-204ENST00000561818 OPRM1P35372 400 aa6.52□□□□□ -1.37
VPS39-204ENST00000561818 MDH2P40926 338 aaKnown RBP6.52□□□□□ -1.37
VPS39-204ENST00000561818 MAGEB1P43366 347 aa6.52□□□□□ -1.37
VPS39-204ENST00000561818 OR3A4PP47883 348 aa6.52□□□□□ -1.37
VPS39-204ENST00000561818 SRP9P49458 86 aaKnown RBP6.52□□□□□ -1.37
VPS39-204ENST00000561818 VEGFCP49767 419 aa6.52□□□□□ -1.37
VPS39-204ENST00000561818 CASP6P55212 293 aa6.52□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms