RNA–Protein interactions for RNA: ENST00000561713.1

VPS35-202, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-202ENST00000561713 ZDHHC23Q8IYP9 409 aa15.6■□□□□ 0.09
VPS35-202ENST00000561713 GALNT4Q8N4A0 578 aa15.6■□□□□ 0.09
VPS35-202ENST00000561713 ZNF454Q8N9F8 522 aa15.6■□□□□ 0.09
VPS35-202ENST00000561713 FAM81AQ8TBF8 368 aa15.6■□□□□ 0.09
VPS35-202ENST00000561713 TBC1D15Q8TC07 691 aa15.6■□□□□ 0.09
VPS35-202ENST00000561713 GAFA1Q96PS6 74 aa15.6■□□□□ 0.09
VPS35-202ENST00000561713 CNTD2Q9H8S5 307 aa15.6■□□□□ 0.09
VPS35-202ENST00000561713 ZNF556Q9HAH1 456 aa15.6■□□□□ 0.09
VPS35-202ENST00000561713 TCF7L1Q9HCS4 588 aa15.6■□□□□ 0.09
VPS35-202ENST00000561713 HAO2Q9NYQ3 351 aa15.6■□□□□ 0.09
VPS35-202ENST00000561713 LAMP5Q9UJQ1 280 aa15.6■□□□□ 0.09
VPS35-202ENST00000561713 CCDC182A6NF36 153 aa15.59■□□□□ 0.09
VPS35-202ENST00000561713 RHBDL1O75783 438 aa15.59■□□□□ 0.09
VPS35-202ENST00000561713 GPM6AP51674 278 aa15.59■□□□□ 0.09
VPS35-202ENST00000561713 RPL15P61313 204 aaKnown RBP15.59■□□□□ 0.09
VPS35-202ENST00000561713 CDK5Q00535 292 aa15.59■□□□□ 0.09
VPS35-202ENST00000561713 DGUOKQ16854 277 aa15.59■□□□□ 0.09
VPS35-202ENST00000561713 KRT77Q7Z794 578 aa15.59■□□□□ 0.09
VPS35-202ENST00000561713 FTMTQ8N4E7 242 aa15.59■□□□□ 0.09
VPS35-202ENST00000561713 FAM110DQ8TAY7 271 aaPredicted RBP15.59■□□□□ 0.09
VPS35-202ENST00000561713 RNF170Q96K19 258 aa15.59■□□□□ 0.09
VPS35-202ENST00000561713 RAB3IPQ96QF0 476 aaPredicted RBP15.59■□□□□ 0.09
VPS35-202ENST00000561713 NIPAL2Q9H841 368 aa15.59■□□□□ 0.09
VPS35-202ENST00000561713 SLC25A19Q9HC21 320 aa15.59■□□□□ 0.09
VPS35-202ENST00000561713 COPS3Q9UNS2 423 aa15.59■□□□□ 0.09
VPS35-202ENST00000561713 MPC1Q9Y5U8 109 aa15.59■□□□□ 0.09
VPS35-202ENST00000561713 KPTNQ9Y664 436 aa15.59■□□□□ 0.09
VPS35-202ENST00000561713 A0A1B0GVI7 797 aa15.58■□□□□ 0.08
VPS35-202ENST00000561713 TMEM210A6NLX4 147 aa15.58■□□□□ 0.08
VPS35-202ENST00000561713 RNASEK-C17orf49H0YIS7 233 aa15.58■□□□□ 0.08
VPS35-202ENST00000561713 ALOX5APP20292 161 aa15.58■□□□□ 0.08
VPS35-202ENST00000561713 DCTDP32321 178 aa15.58■□□□□ 0.08
VPS35-202ENST00000561713 MFGE8Q08431 387 aaPredicted RBP15.58■□□□□ 0.08
VPS35-202ENST00000561713 LRRC10Q5BKY1 277 aa15.58■□□□□ 0.08
VPS35-202ENST00000561713 Q8N7P7 452 aa15.58■□□□□ 0.08
VPS35-202ENST00000561713 LY6G5BQ8NDX9 201 aa15.58■□□□□ 0.08
VPS35-202ENST00000561713 C12orf43Q96C57 262 aaKnown RBP15.58■□□□□ 0.08
VPS35-202ENST00000561713 DCTN5Q9BTE1 182 aa15.58■□□□□ 0.08
VPS35-202ENST00000561713 C1orf21Q9H246 121 aa15.58■□□□□ 0.08
VPS35-202ENST00000561713 FAM206AQ9NX38 181 aa15.58■□□□□ 0.08
VPS35-202ENST00000561713 TVP23BQ9NYZ1 205 aa15.58■□□□□ 0.08
VPS35-202ENST00000561713 CST4P01036 141 aa15.57■□□□□ 0.08
VPS35-202ENST00000561713 HMGN1P05114 100 aa15.57■□□□□ 0.08
VPS35-202ENST00000561713 IER3P46695 156 aa15.57■□□□□ 0.08
VPS35-202ENST00000561713 TGM4P49221 684 aa15.57■□□□□ 0.08
VPS35-202ENST00000561713 SLC35D3Q5M8T2 416 aa15.57■□□□□ 0.08
VPS35-202ENST00000561713 BCDIN3DQ7Z5W3 292 aaKnown RBP15.57■□□□□ 0.08
VPS35-202ENST00000561713 LDLRAD3Q86YD5 345 aa15.57■□□□□ 0.08
VPS35-202ENST00000561713 OR10Z1Q8NGY1 313 aa15.57■□□□□ 0.08
VPS35-202ENST00000561713 ANGPTL6Q8NI99 470 aa15.57■□□□□ 0.08
VPS35-202ENST00000561713 PPP1R14AQ96A00 147 aa15.57■□□□□ 0.08
VPS35-202ENST00000561713 SLC25A10Q9UBX3 287 aaPredicted RBP15.57■□□□□ 0.08
VPS35-202ENST00000561713 ZNF816-ZNF321PA0A0X1KG74 233 aa15.56■□□□□ 0.08
VPS35-202ENST00000561713 TCRBV3S1A0A5B6 114 aa15.56■□□□□ 0.08
VPS35-202ENST00000561713 ZNF732B4DXR9 585 aa15.56■□□□□ 0.08
VPS35-202ENST00000561713 FAHP16930 419 aa15.56■□□□□ 0.08
VPS35-202ENST00000561713 NDUFB7P17568 137 aa15.56■□□□□ 0.08
VPS35-202ENST00000561713 GABRA2P47869 451 aa15.56■□□□□ 0.08
VPS35-202ENST00000561713 SNCBQ16143 134 aa15.56■□□□□ 0.08
VPS35-202ENST00000561713 SNAPC1Q16533 368 aa15.56■□□□□ 0.08
VPS35-202ENST00000561713 HIST2H2BDQ6DRA6 164 aa15.56■□□□□ 0.08
VPS35-202ENST00000561713 ZNF788Q6ZQV5 615 aa15.56■□□□□ 0.08
VPS35-202ENST00000561713 PLEKHG7Q6ZR37 379 aa15.56■□□□□ 0.08
VPS35-202ENST00000561713 Q6ZSV7 163 aa15.56■□□□□ 0.08
VPS35-202ENST00000561713 TRPM8Q7Z2W7 1104 aa15.56■□□□□ 0.08
VPS35-202ENST00000561713 BATF2Q8N1L9 274 aa15.56■□□□□ 0.08
VPS35-202ENST00000561713 GPR84Q9NQS5 396 aa15.56■□□□□ 0.08
VPS35-202ENST00000561713 PAPOLBQ9NRJ5 636 aaKnown RBP15.56■□□□□ 0.08
VPS35-202ENST00000561713 NLKQ9UBE8 527 aa15.56■□□□□ 0.08
VPS35-202ENST00000561713 DNAJB9Q9UBS3 223 aa15.56■□□□□ 0.08
VPS35-202ENST00000561713 GTF2A1LQ9UNN4 478 aa15.56■□□□□ 0.08
VPS35-202ENST00000561713 DSCAML1Q8TD84 2053 aa15.56■□□□□ 0.08
VPS35-202ENST00000561713 A0A1W2PQ09 198 aa15.55■□□□□ 0.08
VPS35-202ENST00000561713 MAGEB4O15481 346 aaPredicted RBP15.55■□□□□ 0.08
VPS35-202ENST00000561713 GYG2O15488 501 aa15.55■□□□□ 0.08
VPS35-202ENST00000561713 PRKYO43930 277 aa15.55■□□□□ 0.08
VPS35-202ENST00000561713 MITFO75030 526 aaPredicted RBP15.55■□□□□ 0.08
VPS35-202ENST00000561713 ANXA8P13928 327 aa15.55■□□□□ 0.08
VPS35-202ENST00000561713 GLRA1P23415 457 aa15.55■□□□□ 0.08
VPS35-202ENST00000561713 PLCXD3Q63HM9 321 aa15.55■□□□□ 0.08
VPS35-202ENST00000561713 CMTM4Q8IZR5 234 aa15.55■□□□□ 0.08
VPS35-202ENST00000561713 ZSCAN4Q8NAM6 433 aaPredicted RBP15.55■□□□□ 0.08
VPS35-202ENST00000561713 TMEM185AQ8NFB2 350 aa15.55■□□□□ 0.08
VPS35-202ENST00000561713 OR51E1Q8TCB6 317 aa15.55■□□□□ 0.08
VPS35-202ENST00000561713 ZNF488Q96MN9 340 aa15.55■□□□□ 0.08
VPS35-202ENST00000561713 PBOV1Q9GZY1 135 aa15.55■□□□□ 0.08
VPS35-202ENST00000561713 ABCB9Q9NP78 766 aa15.55■□□□□ 0.08
VPS35-202ENST00000561713 ZNRD1Q9P1U0 126 aa15.55■□□□□ 0.08
VPS35-202ENST00000561713 IKZF2Q9UKS7 526 aa15.55■□□□□ 0.08
VPS35-202ENST00000561713 POMPQ9Y244 141 aa15.55■□□□□ 0.08
VPS35-202ENST00000561713 ZNF281Q9Y2X9 895 aa15.55■□□□□ 0.08
VPS35-202ENST00000561713 FAM96BQ9Y3D0 163 aa15.55■□□□□ 0.08
VPS35-202ENST00000561713 IGKV1D-17A0A075B6S4 117 aa15.54■□□□□ 0.08
VPS35-202ENST00000561713 TMEM269A0A1B0GVZ9 245 aa15.54■□□□□ 0.08
VPS35-202ENST00000561713 OR2AT4A6NND4 320 aa15.54■□□□□ 0.08
VPS35-202ENST00000561713 NPFFO15130 113 aa15.54■□□□□ 0.08
VPS35-202ENST00000561713 SIGLEC5O15389 551 aa15.54■□□□□ 0.08
VPS35-202ENST00000561713 SAA4P35542 130 aa15.54■□□□□ 0.08
VPS35-202ENST00000561713 CRISP1P54107 249 aa15.54■□□□□ 0.08
VPS35-202ENST00000561713 DNAL1Q4LDG9 190 aa15.54■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms