RNA–Protein interactions for RNA: ENST00000558155.1

SPG11-208, Transcript of SPG11, spatacsin vesicle trafficking associated, human

TSL 5

Gene SPG11, Length 571 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SPG11-208	ENST00000558155	TIGD6	Q17RP2	521 aa		4.16	□□□□□ -1.74
SPG11-208	ENST00000558155	LRRC23	Q53EV4	343 aa	Predicted RBP	4.16	□□□□□ -1.74
SPG11-208	ENST00000558155	PLA1A	Q53H76	456 aa		4.16	□□□□□ -1.74
SPG11-208	ENST00000558155	KHDC1L	Q5JSQ8	128 aa		4.16	□□□□□ -1.74
SPG11-208	ENST00000558155	KCTD18	Q6PI47	426 aa	Predicted RBP	4.16	□□□□□ -1.74
SPG11-208	ENST00000558155		Q6ZS46	218 aa		4.16	□□□□□ -1.74
SPG11-208	ENST00000558155	KCTD8	Q6ZWB6	473 aa		4.16	□□□□□ -1.74
SPG11-208	ENST00000558155	MEPCE	Q7L2J0	689 aa	Known RBP	4.16	□□□□□ -1.74
SPG11-208	ENST00000558155	KRT77	Q7Z794	578 aa		4.16	□□□□□ -1.74
SPG11-208	ENST00000558155	LHFPL4	Q7Z7J7	247 aa		4.16	□□□□□ -1.74
SPG11-208	ENST00000558155	WDR86	Q86TI4	376 aa		4.16	□□□□□ -1.74
SPG11-208	ENST00000558155	ZBTB46	Q86UZ6	589 aa		4.16	□□□□□ -1.74
SPG11-208	ENST00000558155	CYP4Z1	Q86W10	505 aa		4.16	□□□□□ -1.74
SPG11-208	ENST00000558155	FTMT	Q8N4E7	242 aa		4.16	□□□□□ -1.74
SPG11-208	ENST00000558155	LINC00482	Q8N8I6	264 aa		4.16	□□□□□ -1.74
SPG11-208	ENST00000558155	CSNK2A3	Q8NEV1	391 aa		4.16	□□□□□ -1.74
SPG11-208	ENST00000558155	TMEM185A	Q8NFB2	350 aa		4.16	□□□□□ -1.74
SPG11-208	ENST00000558155		Q8NFD4	153 aa		4.16	□□□□□ -1.74
SPG11-208	ENST00000558155	OR8J3	Q8NGG0	315 aa		4.16	□□□□□ -1.74
SPG11-208	ENST00000558155	OR52H1	Q8NGJ2	320 aa		4.16	□□□□□ -1.74
SPG11-208	ENST00000558155	OR13D1	Q8NGV5	346 aa		4.16	□□□□□ -1.74
SPG11-208	ENST00000558155	OR2T27	Q8NH04	317 aa		4.16	□□□□□ -1.74
SPG11-208	ENST00000558155	OR4K13	Q8NH42	304 aa		4.16	□□□□□ -1.74
SPG11-208	ENST00000558155	ZNF671	Q8TAW3	534 aa		4.16	□□□□□ -1.74
SPG11-208	ENST00000558155	CAPSL	Q8WWF8	208 aa		4.16	□□□□□ -1.74
SPG11-208	ENST00000558155	TFAP2C	Q92754	450 aa		4.16	□□□□□ -1.74
SPG11-208	ENST00000558155	RPL3L	Q92901	407 aa	Known RBP	4.16	□□□□□ -1.74
SPG11-208	ENST00000558155	SPSB4	Q96A44	273 aa		4.16	□□□□□ -1.74
SPG11-208	ENST00000558155	SGK3	Q96BR1	496 aa		4.16	□□□□□ -1.74
SPG11-208	ENST00000558155	FAM46A	Q96IP4	442 aa	Known RBP	4.16	□□□□□ -1.74
SPG11-208	ENST00000558155	AKR1E2	Q96JD6	320 aa		4.16	□□□□□ -1.74
SPG11-208	ENST00000558155	MAP6	Q96JE9	813 aa		4.16	□□□□□ -1.74
SPG11-208	ENST00000558155	ERMAP	Q96PL5	475 aa	Predicted RBP	4.16	□□□□□ -1.74
SPG11-208	ENST00000558155	GAFA1	Q96PS6	74 aa		4.16	□□□□□ -1.74
SPG11-208	ENST00000558155	HIST1H2AA	Q96QV6	131 aa		4.16	□□□□□ -1.74
SPG11-208	ENST00000558155	NMNAT3	Q96T66	252 aa		4.16	□□□□□ -1.74
SPG11-208	ENST00000558155	KCNJ15	Q99712	375 aa		4.16	□□□□□ -1.74
SPG11-208	ENST00000558155	COPS4	Q9BT78	406 aa		4.16	□□□□□ -1.74
SPG11-208	ENST00000558155	RTL8A	Q9BWD3	113 aa		4.16	□□□□□ -1.74
SPG11-208	ENST00000558155	TMEM120A	Q9BXJ8	343 aa		4.16	□□□□□ -1.74
SPG11-208	ENST00000558155	WDR13	Q9H1Z4	485 aa		4.16	□□□□□ -1.74
SPG11-208	ENST00000558155	ANKRD19P	Q9H560	264 aa		4.16	□□□□□ -1.74
SPG11-208	ENST00000558155	ABCB9	Q9NP78	766 aa		4.16	□□□□□ -1.74
SPG11-208	ENST00000558155	KRCC1	Q9NPI7	259 aa	Predicted RBP	4.16	□□□□□ -1.74
SPG11-208	ENST00000558155	CENPM	Q9NSP4	180 aa		4.16	□□□□□ -1.74
SPG11-208	ENST00000558155	USE1	Q9NZ43	259 aa		4.16	□□□□□ -1.74
SPG11-208	ENST00000558155	RABL2B	Q9UNT1	228 aa		4.16	□□□□□ -1.74
SPG11-208	ENST00000558155		J3KTA2	159 aa		4.15	□□□□□ -1.75
SPG11-208	ENST00000558155	FFAR1	O14842	300 aa		4.15	□□□□□ -1.75
SPG11-208	ENST00000558155	ARPC3	O15145	178 aa		4.15	□□□□□ -1.75
SPG11-208	ENST00000558155	IDH3B	O43837	385 aa		4.15	□□□□□ -1.75
SPG11-208	ENST00000558155	ARG1	P05089	322 aa		4.15	□□□□□ -1.75
SPG11-208	ENST00000558155	HNRNPC	P07910	306 aa	Known RBP eCLIP	4.15	□□□□□ -1.75
SPG11-208	ENST00000558155	PSG2	P11465	335 aa		4.15	□□□□□ -1.75
SPG11-208	ENST00000558155	AZGP1	P25311	298 aa	Known RBP	4.15	□□□□□ -1.75
SPG11-208	ENST00000558155	SLC6A6	P31641	620 aa		4.15	□□□□□ -1.75
SPG11-208	ENST00000558155	OTX1	P32242	354 aa	Predicted RBP	4.15	□□□□□ -1.75
SPG11-208	ENST00000558155	MYCNOS	P40205	109 aa		4.15	□□□□□ -1.75
SPG11-208	ENST00000558155	MXRA7	P84157	204 aa		4.15	□□□□□ -1.75
SPG11-208	ENST00000558155	FAM3A	P98173	230 aa		4.15	□□□□□ -1.75
SPG11-208	ENST00000558155	GABPB1	Q06547	395 aa	Predicted RBP	4.15	□□□□□ -1.75
SPG11-208	ENST00000558155	TMEM95	Q3KNT9	176 aa		4.15	□□□□□ -1.75
SPG11-208	ENST00000558155	IFI44L	Q53G44	452 aa		4.15	□□□□□ -1.75
SPG11-208	ENST00000558155	FAM76B	Q5HYJ3	339 aa		4.15	□□□□□ -1.75
SPG11-208	ENST00000558155	TCTEX1D4	Q5JR98	221 aa		4.15	□□□□□ -1.75
SPG11-208	ENST00000558155	AGBL2	Q5U5Z8	902 aa		4.15	□□□□□ -1.75
SPG11-208	ENST00000558155	TMEM200B	Q69YZ2	307 aa		4.15	□□□□□ -1.75
SPG11-208	ENST00000558155	WDR93	Q6P2C0	686 aa		4.15	□□□□□ -1.75
SPG11-208	ENST00000558155	SMARCD3	Q6STE5	483 aa		4.15	□□□□□ -1.75
SPG11-208	ENST00000558155	FKBP9P1	Q75LS8	142 aa		4.15	□□□□□ -1.75
SPG11-208	ENST00000558155	SLC16A9	Q7RTY1	509 aa		4.15	□□□□□ -1.75
SPG11-208	ENST00000558155	C16orf82	Q7Z2V1	217 aa		4.15	□□□□□ -1.75
SPG11-208	ENST00000558155	ZDHHC21	Q8IVQ6	265 aa		4.15	□□□□□ -1.75
SPG11-208	ENST00000558155	MRPL41	Q8IXM3	137 aa	Known RBP	4.15	□□□□□ -1.75
SPG11-208	ENST00000558155	TIGD4	Q8IY51	512 aa		4.15	□□□□□ -1.75
SPG11-208	ENST00000558155	DYNAP	Q8N1N2	210 aa		4.15	□□□□□ -1.75
SPG11-208	ENST00000558155	C11orf42	Q8N5U0	333 aa		4.15	□□□□□ -1.75
SPG11-208	ENST00000558155	ZNRF1	Q8ND25	227 aa		4.15	□□□□□ -1.75
SPG11-208	ENST00000558155	STMN2	Q93045	179 aa		4.15	□□□□□ -1.75
SPG11-208	ENST00000558155	ZBTB9	Q96C00	473 aa		4.15	□□□□□ -1.75
SPG11-208	ENST00000558155	SDSL	Q96GA7	329 aa		4.15	□□□□□ -1.75
SPG11-208	ENST00000558155	REEP6	Q96HR9	211 aa		4.15	□□□□□ -1.75
SPG11-208	ENST00000558155	RSRC1	Q96IZ7	334 aa	Known RBP	4.15	□□□□□ -1.75
SPG11-208	ENST00000558155	RNF170	Q96K19	258 aa		4.15	□□□□□ -1.75
SPG11-208	ENST00000558155	ASCL2	Q99929	193 aa		4.15	□□□□□ -1.75
SPG11-208	ENST00000558155	ZNF649	Q9BS31	505 aa		4.15	□□□□□ -1.75
SPG11-208	ENST00000558155	PAPOLG	Q9BWT3	736 aa	Known RBP	4.15	□□□□□ -1.75
SPG11-208	ENST00000558155	C1orf21	Q9H246	121 aa		4.15	□□□□□ -1.75
SPG11-208	ENST00000558155	ELL3	Q9HB65	397 aa	Predicted RBP	4.15	□□□□□ -1.75
SPG11-208	ENST00000558155	RPRD1B	Q9NQG5	326 aa	Known RBP	4.15	□□□□□ -1.75
SPG11-208	ENST00000558155	C19orf12	Q9NSK7	152 aa		4.15	□□□□□ -1.75
SPG11-208	ENST00000558155	MRPL22	Q9NWU5	206 aa	Known RBP	4.15	□□□□□ -1.75
SPG11-208	ENST00000558155	RASL12	Q9NYN1	266 aa		4.15	□□□□□ -1.75
SPG11-208	ENST00000558155	NKX1-2	Q9UD57	310 aa	Predicted RBP	4.15	□□□□□ -1.75
SPG11-208	ENST00000558155	AP3M1	Q9Y2T2	418 aa		4.15	□□□□□ -1.75
SPG11-208	ENST00000558155	RHBDD3	Q9Y3P4	386 aa		4.15	□□□□□ -1.75
SPG11-208	ENST00000558155	FAM32A	Q9Y421	112 aa	Known RBP	4.15	□□□□□ -1.75
SPG11-208	ENST00000558155	LSM4	Q9Y4Z0	139 aa	Known RBP	4.15	□□□□□ -1.75
SPG11-208	ENST00000558155	MPC1	Q9Y5U8	109 aa		4.15	□□□□□ -1.75
SPG11-208	ENST00000558155	SNX13	Q9Y5W8	968 aa		4.15	□□□□□ -1.75

Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms