RNA–Protein interactions for RNA: ENST00000555550.1

SCFD1-216, Transcript of sec1 family domain containing 1, humanhuman

TSL 4

Gene SCFD1, Length 541 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-216ENST00000555550 RNF10Q8N5U6 811 aaKnown RBP1.14□□□□□ -2.23
SCFD1-216ENST00000555550 ZFP62Q8NB50 900 aaPredicted RBP1.14□□□□□ -2.23
SCFD1-216ENST00000555550 ITLN2Q8WWU7 325 aaPredicted RBP1.14□□□□□ -2.23
SCFD1-216ENST00000555550 OR5P3Q8WZ94 311 aa1.14□□□□□ -2.23
SCFD1-216ENST00000555550 RAB1CQ92928 201 aa1.14□□□□□ -2.23
SCFD1-216ENST00000555550 SLC25A44Q96H78 314 aaPredicted RBP1.14□□□□□ -2.23
SCFD1-216ENST00000555550 DERL3Q96Q80 235 aa1.14□□□□□ -2.23
SCFD1-216ENST00000555550 GPR21Q99679 349 aa1.14□□□□□ -2.23
SCFD1-216ENST00000555550 NUP58Q9BVL2 599 aa1.14□□□□□ -2.23
SCFD1-216ENST00000555550 HIGD2AQ9BW72 106 aa1.14□□□□□ -2.23
SCFD1-216ENST00000555550 UCK2Q9BZX2 261 aa1.14□□□□□ -2.23
SCFD1-216ENST00000555550 API5Q9BZZ5 524 aaKnown RBP1.14□□□□□ -2.23
SCFD1-216ENST00000555550 SLC7A5P2Q9GIP4 190 aa1.14□□□□□ -2.23
SCFD1-216ENST00000555550 ANKRA2Q9H9E1 313 aa1.14□□□□□ -2.23
SCFD1-216ENST00000555550 CYP3A43Q9HB55 503 aa1.14□□□□□ -2.23
SCFD1-216ENST00000555550 NMRK1Q9NWW6 199 aa1.14□□□□□ -2.23
SCFD1-216ENST00000555550 DOCK6Q96HP0 2047 aa1.13□□□□□ -2.23
SCFD1-216ENST00000555550 TMEM72A0PK05 275 aa1.13□□□□□ -2.23
SCFD1-216ENST00000555550 GGTLC3B5MD39 225 aa1.13□□□□□ -2.23
SCFD1-216ENST00000555550 OR2F2O95006 317 aa1.13□□□□□ -2.23
SCFD1-216ENST00000555550 CD160O95971 181 aa1.13□□□□□ -2.23
SCFD1-216ENST00000555550 CLTAP09496 248 aa1.13□□□□□ -2.23
SCFD1-216ENST00000555550 SLC35G6P0C7Q6 338 aa1.13□□□□□ -2.23
SCFD1-216ENST00000555550 SERPINB8P50452 374 aa1.13□□□□□ -2.23
SCFD1-216ENST00000555550 ZNF83P51522 516 aa1.13□□□□□ -2.23
SCFD1-216ENST00000555550 AP1S2P56377 157 aa1.13□□□□□ -2.23
SCFD1-216ENST00000555550 TSC22D1Q15714 1073 aa1.13□□□□□ -2.23
SCFD1-216ENST00000555550 PRAMEF20Q5VT98 475 aa1.13□□□□□ -2.23
SCFD1-216ENST00000555550 KCTD16Q68DU8 428 aa1.13□□□□□ -2.23
SCFD1-216ENST00000555550 TMEM144Q7Z5S9 345 aa1.13□□□□□ -2.23
SCFD1-216ENST00000555550 SCD5Q86SK9 330 aa1.13□□□□□ -2.23
SCFD1-216ENST00000555550 CPNE9Q8IYJ1 553 aa1.13□□□□□ -2.23
SCFD1-216ENST00000555550 VKORC1L1Q8N0U8 176 aa1.13□□□□□ -2.23
SCFD1-216ENST00000555550 PQLC3Q8N755 202 aa1.13□□□□□ -2.23
SCFD1-216ENST00000555550 OR5AR1Q8NGP9 310 aa1.13□□□□□ -2.23
SCFD1-216ENST00000555550 OR1S1Q8NH92 325 aa1.13□□□□□ -2.23
SCFD1-216ENST00000555550 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP1.13□□□□□ -2.23
SCFD1-216ENST00000555550 NRGNQ92686 78 aa1.13□□□□□ -2.23
SCFD1-216ENST00000555550 TPD52L3Q96J77 140 aa1.13□□□□□ -2.23
SCFD1-216ENST00000555550 CCDC77Q9BR77 488 aa1.13□□□□□ -2.23
SCFD1-216ENST00000555550 FAM60AQ9NP50 221 aa1.13□□□□□ -2.23
SCFD1-216ENST00000555550 PTTG3PQ9NZH4 202 aa1.13□□□□□ -2.23
SCFD1-216ENST00000555550 TRAPPC1Q9Y5R8 145 aa1.13□□□□□ -2.23
SCFD1-216ENST00000555550 BAZ1BQ9UIG0 1483 aaKnown RBP1.12□□□□□ -2.23
SCFD1-216ENST00000555550 A0A1W2PNM2 257 aa1.12□□□□□ -2.23
SCFD1-216ENST00000555550 GOLGA8OA6NCC3 632 aa1.12□□□□□ -2.23
SCFD1-216ENST00000555550 GOLGA8NF8WBI6 632 aa1.12□□□□□ -2.23
SCFD1-216ENST00000555550 MYL12BO14950 172 aa1.12□□□□□ -2.23
SCFD1-216ENST00000555550 PTHP01270 115 aa1.12□□□□□ -2.23
SCFD1-216ENST00000555550 IGHV3-53P01767 116 aa1.12□□□□□ -2.23
SCFD1-216ENST00000555550 FGF4P08620 206 aa1.12□□□□□ -2.23
SCFD1-216ENST00000555550 P0DMU3 169 aa1.12□□□□□ -2.23
SCFD1-216ENST00000555550 FAM231AP0DMU4 169 aa1.12□□□□□ -2.23
SCFD1-216ENST00000555550 FAM231CP0DMU5 169 aa1.12□□□□□ -2.23
SCFD1-216ENST00000555550 GABRG2P18507 467 aa1.12□□□□□ -2.23
SCFD1-216ENST00000555550 OTX1P32242 354 aaPredicted RBP1.12□□□□□ -2.23
SCFD1-216ENST00000555550 NUDT2P50583 147 aa1.12□□□□□ -2.23
SCFD1-216ENST00000555550 SPAG1Q07617 926 aa1.12□□□□□ -2.23
SCFD1-216ENST00000555550 ADIGQ0VDE8 80 aa1.12□□□□□ -2.23
SCFD1-216ENST00000555550 TFDP2Q14188 446 aa1.12□□□□□ -2.23
SCFD1-216ENST00000555550 TRMT5Q32P41 509 aaKnown RBP1.12□□□□□ -2.23
SCFD1-216ENST00000555550 ALKBH6Q3KRA9 238 aa1.12□□□□□ -2.23
SCFD1-216ENST00000555550 RWDD4Q6NW29 188 aaKnown RBP1.12□□□□□ -2.23
SCFD1-216ENST00000555550 ISG20Q96AZ6 181 aaKnown RBP1.12□□□□□ -2.23
SCFD1-216ENST00000555550 ZNF707Q96C28 371 aaPredicted RBP1.12□□□□□ -2.23
SCFD1-216ENST00000555550 RASD2Q96D21 266 aa1.12□□□□□ -2.23
SCFD1-216ENST00000555550 MRPL48Q96GC5 212 aaKnown RBP1.12□□□□□ -2.23
SCFD1-216ENST00000555550 TGS1Q96RS0 853 aaKnown RBP1.12□□□□□ -2.23
SCFD1-216ENST00000555550 HEBP1Q9NRV9 189 aa1.12□□□□□ -2.23
SCFD1-216ENST00000555550 DDX19BQ9UMR2 479 aa1.12□□□□□ -2.23
SCFD1-216ENST00000555550 RCL1Q9Y2P8 373 aaKnown RBP1.12□□□□□ -2.23
SCFD1-216ENST00000555550 ICOSQ9Y6W8 199 aa1.12□□□□□ -2.23
SCFD1-216ENST00000555550 VWDEQ8N2E2 1590 aa1.12□□□□□ -2.23
SCFD1-216ENST00000555550 MROH5Q6ZUA9 1318 aa1.12□□□□□ -2.23
SCFD1-216ENST00000555550 MYO9BQ13459 2157 aa1.11□□□□□ -2.23
SCFD1-216ENST00000555550 IGKV1OR2-108A0A075B7D4 117 aa1.11□□□□□ -2.23
SCFD1-216ENST00000555550 GOLGA6L7A0A1B0GV03 622 aa1.11□□□□□ -2.23
SCFD1-216ENST00000555550 GOLGA8JA6NMD2 632 aa1.11□□□□□ -2.23
SCFD1-216ENST00000555550 ERLIN1O75477 346 aa1.11□□□□□ -2.23
SCFD1-216ENST00000555550 CXorf1O96002 111 aa1.11□□□□□ -2.23
SCFD1-216ENST00000555550 SEC11BP0C7V7 166 aa1.11□□□□□ -2.23
SCFD1-216ENST00000555550 GOLGA8HP0CJ92 632 aa1.11□□□□□ -2.23
SCFD1-216ENST00000555550 UQCRFS1P47985 274 aa1.11□□□□□ -2.23
SCFD1-216ENST00000555550 TUFMP49411 452 aaKnown RBP1.11□□□□□ -2.23
SCFD1-216ENST00000555550 GRB2P62993 217 aaKnown RBP1.11□□□□□ -2.23
SCFD1-216ENST00000555550 TRDNQ13061 729 aa1.11□□□□□ -2.23
SCFD1-216ENST00000555550 OR1Q1Q15612 314 aa1.11□□□□□ -2.23
SCFD1-216ENST00000555550 KDM4DQ6B0I6 523 aa1.11□□□□□ -2.23
SCFD1-216ENST00000555550 OR2T5Q6IEZ7 315 aa1.11□□□□□ -2.23
SCFD1-216ENST00000555550 UNC93AQ86WB7 457 aa1.11□□□□□ -2.23
SCFD1-216ENST00000555550 RAB43Q86YS6 212 aa1.11□□□□□ -2.23
SCFD1-216ENST00000555550 ITPRIPQ8IWB1 547 aa1.11□□□□□ -2.23
SCFD1-216ENST00000555550 OR2T29Q8NH02 315 aa1.11□□□□□ -2.23
SCFD1-216ENST00000555550 ASZ1Q8WWH4 475 aa1.11□□□□□ -2.23
SCFD1-216ENST00000555550 SND1-IT1Q9HBX3 110 aa1.11□□□□□ -2.23
SCFD1-216ENST00000555550 LYARQ9NX58 379 aaKnown RBP1.11□□□□□ -2.23
SCFD1-216ENST00000555550 ENPP4Q9Y6X5 453 aa1.11□□□□□ -2.23
SCFD1-216ENST00000555550 C2orf16Q68DN1 1984 aa1.1□□□□□ -2.23
SCFD1-216ENST00000555550 SERTM2A0A1B0GWG4 89 aa1.1□□□□□ -2.23
SCFD1-216ENST00000555550 IGLL5B9A064 214 aa1.1□□□□□ -2.23
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms