RNA–Protein interactions for RNA: ENST00000554165.1

CCDC88C-208, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 420 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-208ENST00000554165 OCEL1Q9H607 264 aa9.64□□□□□ -0.87
CCDC88C-208ENST00000554165 GPR173Q9NS66 373 aa9.64□□□□□ -0.87
CCDC88C-208ENST00000554165 SNTG1Q9NSN8 517 aa9.64□□□□□ -0.87
CCDC88C-208ENST00000554165 ZNF391Q9UJN7 358 aa9.64□□□□□ -0.87
CCDC88C-208ENST00000554165 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP9.64□□□□□ -0.87
CCDC88C-208ENST00000554165 MYRFQ9Y2G1 1151 aa9.64□□□□□ -0.87
CCDC88C-208ENST00000554165 LRCH1Q9Y2L9 728 aa9.64□□□□□ -0.87
CCDC88C-208ENST00000554165 INSIG2Q9Y5U4 225 aa9.64□□□□□ -0.87
CCDC88C-208ENST00000554165 SNX5Q9Y5X3 404 aa9.64□□□□□ -0.87
CCDC88C-208ENST00000554165 SOX21Q9Y651 276 aaPredicted RBP9.64□□□□□ -0.87
CCDC88C-208ENST00000554165 IGHV3OR16-10A0A075B7F0 116 aa9.63□□□□□ -0.87
CCDC88C-208ENST00000554165 DAPL1A0PJW8 107 aa9.63□□□□□ -0.87
CCDC88C-208ENST00000554165 J3QLI3 93 aa9.63□□□□□ -0.87
CCDC88C-208ENST00000554165 SULT1C4O75897 302 aa9.63□□□□□ -0.87
CCDC88C-208ENST00000554165 DHRS3O75911 302 aa9.63□□□□□ -0.87
CCDC88C-208ENST00000554165 FSHBP01225 129 aa9.63□□□□□ -0.87
CCDC88C-208ENST00000554165 SELLP14151 372 aa9.63□□□□□ -0.87
CCDC88C-208ENST00000554165 NANOS3P60323 173 aaKnown RBP9.63□□□□□ -0.87
CCDC88C-208ENST00000554165 MZT1Q08AG7 82 aa9.63□□□□□ -0.87
CCDC88C-208ENST00000554165 RIPPLY1Q0D2K3 151 aa9.63□□□□□ -0.87
CCDC88C-208ENST00000554165 TMED1Q13445 227 aa9.63□□□□□ -0.87
CCDC88C-208ENST00000554165 ZSCAN26Q16670 478 aa9.63□□□□□ -0.87
CCDC88C-208ENST00000554165 FAM76BQ5HYJ3 339 aa9.63□□□□□ -0.87
CCDC88C-208ENST00000554165 KLF17Q5JT82 389 aaPredicted RBP9.63□□□□□ -0.87
CCDC88C-208ENST00000554165 TEX36Q5VZQ5 186 aa9.63□□□□□ -0.87
CCDC88C-208ENST00000554165 PLCXD3Q63HM9 321 aa9.63□□□□□ -0.87
CCDC88C-208ENST00000554165 KRT74Q7RTS7 529 aa9.63□□□□□ -0.87
CCDC88C-208ENST00000554165 C1QL2Q7Z5L3 287 aa9.63□□□□□ -0.87
CCDC88C-208ENST00000554165 THAP5Q7Z6K1 395 aa9.63□□□□□ -0.87
CCDC88C-208ENST00000554165 LHFPL3Q86UP9 236 aa9.63□□□□□ -0.87
CCDC88C-208ENST00000554165 FAM216BQ8N7L0 139 aa9.63□□□□□ -0.87
CCDC88C-208ENST00000554165 ZNF488Q96MN9 340 aa9.63□□□□□ -0.87
CCDC88C-208ENST00000554165 TECTBQ96PL2 329 aa9.63□□□□□ -0.87
CCDC88C-208ENST00000554165 OR51I2Q9H344 312 aa9.63□□□□□ -0.87
CCDC88C-208ENST00000554165 RNPEPL1Q9HAU8 725 aa9.63□□□□□ -0.87
CCDC88C-208ENST00000554165 CLN8Q9UBY8 286 aa9.63□□□□□ -0.87
CCDC88C-208ENST00000554165 OR5V1Q9UGF6 321 aa9.63□□□□□ -0.87
CCDC88C-208ENST00000554165 EXOGQ9Y2C4 368 aaKnown RBP9.63□□□□□ -0.87
CCDC88C-208ENST00000554165 AUP1Q9Y679 476 aa9.63□□□□□ -0.87
CCDC88C-208ENST00000554165 V9GYS6 101 aa9.63□□□□□ -0.87
CCDC88C-208ENST00000554165 TRAV38-1A0A0B4J264 116 aa9.62□□□□□ -0.87
CCDC88C-208ENST00000554165 PPIAL4CA0A0B4J2A2 164 aa9.62□□□□□ -0.87
CCDC88C-208ENST00000554165 IGHV2-70DA0A0C4DH43 119 aa9.62□□□□□ -0.87
CCDC88C-208ENST00000554165 SRRM5B3KS81 715 aa9.62□□□□□ -0.87
CCDC88C-208ENST00000554165 SLC16A6O15403 523 aa9.62□□□□□ -0.87
CCDC88C-208ENST00000554165 WBP4O75554 376 aaKnown RBP9.62□□□□□ -0.87
CCDC88C-208ENST00000554165 VENTXO95231 258 aa9.62□□□□□ -0.87
CCDC88C-208ENST00000554165 NRASP01111 189 aa9.62□□□□□ -0.87
CCDC88C-208ENST00000554165 DBTP11182 482 aaKnown RBP9.62□□□□□ -0.87
CCDC88C-208ENST00000554165 EPHA1P21709 976 aa9.62□□□□□ -0.87
CCDC88C-208ENST00000554165 CFHR2P36980 270 aa9.62□□□□□ -0.87
CCDC88C-208ENST00000554165 PAX8Q06710 450 aa9.62□□□□□ -0.87
CCDC88C-208ENST00000554165 CEACAM21Q3KPI0 293 aa9.62□□□□□ -0.87
CCDC88C-208ENST00000554165 MEDAGQ5VYS4 303 aa9.62□□□□□ -0.87
CCDC88C-208ENST00000554165 TMEM42Q69YG0 159 aa9.62□□□□□ -0.87
CCDC88C-208ENST00000554165 NLRC3Q7RTR2 1065 aa9.62□□□□□ -0.87
CCDC88C-208ENST00000554165 PHC2Q8IXK0 858 aa9.62□□□□□ -0.87
CCDC88C-208ENST00000554165 BCL6BQ8N143 479 aaPredicted RBP9.62□□□□□ -0.87
CCDC88C-208ENST00000554165 BATF2Q8N1L9 274 aa9.62□□□□□ -0.87
CCDC88C-208ENST00000554165 FTMTQ8N4E7 242 aa9.62□□□□□ -0.87
CCDC88C-208ENST00000554165 OR10AC1Q8NH08 325 aa9.62□□□□□ -0.87
CCDC88C-208ENST00000554165 NPRL2Q8WTW4 380 aa9.62□□□□□ -0.87
CCDC88C-208ENST00000554165 RAB40AQ8WXH6 277 aa9.62□□□□□ -0.87
CCDC88C-208ENST00000554165 HIST1H2AAQ96QV6 131 aa9.62□□□□□ -0.87
CCDC88C-208ENST00000554165 NUDT16L1Q9BRJ7 211 aaKnown RBP9.62□□□□□ -0.87
CCDC88C-208ENST00000554165 ZNF649Q9BS31 505 aa9.62□□□□□ -0.87
CCDC88C-208ENST00000554165 MOB1AQ9H8S9 216 aa9.62□□□□□ -0.87
CCDC88C-208ENST00000554165 ISG20L2Q9H9L3 353 aaKnown RBP9.62□□□□□ -0.87
CCDC88C-208ENST00000554165 SMPD3Q9NY59 655 aaPredicted RBP9.62□□□□□ -0.87
CCDC88C-208ENST00000554165 NKX1-2Q9UD57 310 aaPredicted RBP9.62□□□□□ -0.87
CCDC88C-208ENST00000554165 ENPP5Q9UJA9 477 aa9.62□□□□□ -0.87
CCDC88C-208ENST00000554165 KIR2DS1A0A191URI9 304 aa9.61□□□□□ -0.87
CCDC88C-208ENST00000554165 LOC107986453A0A1B0GWG9 222 aa9.61□□□□□ -0.87
CCDC88C-208ENST00000554165 TMEM210A6NLX4 147 aa9.61□□□□□ -0.87
CCDC88C-208ENST00000554165 E9PI62 339 aa9.61□□□□□ -0.87
CCDC88C-208ENST00000554165 J3QLW9 94 aa9.61□□□□□ -0.87
CCDC88C-208ENST00000554165 DVL1O14640 695 aa9.61□□□□□ -0.87
CCDC88C-208ENST00000554165 SYNGR1O43759 233 aa9.61□□□□□ -0.87
CCDC88C-208ENST00000554165 ATP6V1B1P15313 513 aa9.61□□□□□ -0.87
CCDC88C-208ENST00000554165 ZNF19P17023 458 aa9.61□□□□□ -0.87
CCDC88C-208ENST00000554165 CCL1P22362 96 aa9.61□□□□□ -0.87
CCDC88C-208ENST00000554165 GATA3P23771 443 aa9.61□□□□□ -0.87
CCDC88C-208ENST00000554165 GNG3P63215 75 aa9.61□□□□□ -0.87
CCDC88C-208ENST00000554165 SNCBQ16143 134 aa9.61□□□□□ -0.87
CCDC88C-208ENST00000554165 CDONQ4KMG0 1287 aa9.61□□□□□ -0.87
CCDC88C-208ENST00000554165 CLVS2Q5SYC1 327 aa9.61□□□□□ -0.87
CCDC88C-208ENST00000554165 HAGHLQ6PII5 290 aaPredicted RBP9.61□□□□□ -0.87
CCDC88C-208ENST00000554165 Q6ZSR3 168 aa9.61□□□□□ -0.87
CCDC88C-208ENST00000554165 DOK3Q7L591 496 aa9.61□□□□□ -0.87
CCDC88C-208ENST00000554165 ANGPTL5Q86XS5 388 aa9.61□□□□□ -0.87
CCDC88C-208ENST00000554165 ACBD7Q8N6N7 88 aa9.61□□□□□ -0.87
CCDC88C-208ENST00000554165 OR5A2Q8NGI9 324 aa9.61□□□□□ -0.87
CCDC88C-208ENST00000554165 OR52I1Q8NGK6 324 aa9.61□□□□□ -0.87
CCDC88C-208ENST00000554165 OR2G2Q8NGZ5 317 aa9.61□□□□□ -0.87
CCDC88C-208ENST00000554165 CNIH3Q8TBE1 160 aa9.61□□□□□ -0.87
CCDC88C-208ENST00000554165 NANPQ8TBE9 248 aa9.61□□□□□ -0.87
CCDC88C-208ENST00000554165 TRMT10AQ8TBZ6 339 aaKnown RBP9.61□□□□□ -0.87
CCDC88C-208ENST00000554165 CYGBQ8WWM9 190 aa9.61□□□□□ -0.87
CCDC88C-208ENST00000554165 AQP3Q92482 292 aa9.61□□□□□ -0.87
CCDC88C-208ENST00000554165 PELI1Q96FA3 418 aa9.61□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 52.9 ms