RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 ZNF20P17024 532 aa4.77□□□□□ -1.65
LIMA1-212ENST00000552491 ADH6P28332 368 aa4.77□□□□□ -1.65
LIMA1-212ENST00000552491 LAP3P28838 519 aa4.77□□□□□ -1.65
LIMA1-212ENST00000552491 THBS4P35443 961 aa4.77□□□□□ -1.65
LIMA1-212ENST00000552491 FHITP49789 147 aa4.77□□□□□ -1.65
LIMA1-212ENST00000552491 PPT1P50897 306 aa4.77□□□□□ -1.65
LIMA1-212ENST00000552491 SNU13P55769 128 aaKnown RBP4.77□□□□□ -1.65
LIMA1-212ENST00000552491 ECH1Q13011 328 aa4.77□□□□□ -1.65
LIMA1-212ENST00000552491 ARFRP1Q13795 201 aa4.77□□□□□ -1.65
LIMA1-212ENST00000552491 FAM189A2Q15884 450 aa4.77□□□□□ -1.65
LIMA1-212ENST00000552491 FAM76BQ5HYJ3 339 aa4.77□□□□□ -1.65
LIMA1-212ENST00000552491 NSUN5P2Q63ZY6 315 aa4.77□□□□□ -1.65
LIMA1-212ENST00000552491 Q6ZRG5 221 aa4.77□□□□□ -1.65
LIMA1-212ENST00000552491 Q7L0L9 218 aa4.77□□□□□ -1.65
LIMA1-212ENST00000552491 COMMD2Q86X83 199 aa4.77□□□□□ -1.65
LIMA1-212ENST00000552491 C7orf61Q8IZ16 206 aa4.77□□□□□ -1.65
LIMA1-212ENST00000552491 C15orf54Q8N8G6 183 aa4.77□□□□□ -1.65
LIMA1-212ENST00000552491 OR10H5Q8NGA6 315 aa4.77□□□□□ -1.65
LIMA1-212ENST00000552491 MFSD8Q8NHS3 518 aa4.77□□□□□ -1.65
LIMA1-212ENST00000552491 LMX1AQ8TE12 382 aa4.77□□□□□ -1.65
LIMA1-212ENST00000552491 NPRL2Q8WTW4 380 aa4.77□□□□□ -1.65
LIMA1-212ENST00000552491 TMEM234Q8WY98 164 aa4.77□□□□□ -1.65
LIMA1-212ENST00000552491 DAZLQ92904 295 aaKnown RBP4.77□□□□□ -1.65
LIMA1-212ENST00000552491 ERGIC1Q969X5 290 aa4.77□□□□□ -1.65
LIMA1-212ENST00000552491 KLHDC7BQ96G42 594 aa4.77□□□□□ -1.65
LIMA1-212ENST00000552491 LIN37Q96GY3 246 aaPredicted RBP4.77□□□□□ -1.65
LIMA1-212ENST00000552491 KIRREL1Q96J84 757 aa4.77□□□□□ -1.65
LIMA1-212ENST00000552491 IP6K3Q96PC2 410 aa4.77□□□□□ -1.65
LIMA1-212ENST00000552491 OR5B2Q96R09 309 aa4.77□□□□□ -1.65
LIMA1-212ENST00000552491 LIME1Q9H400 295 aa4.77□□□□□ -1.65
LIMA1-212ENST00000552491 PNRC2Q9NPJ4 139 aaKnown RBP4.77□□□□□ -1.65
LIMA1-212ENST00000552491 PARP11Q9NR21 331 aa4.77□□□□□ -1.65
LIMA1-212ENST00000552491 ASH2LQ9UBL3 628 aa4.77□□□□□ -1.65
LIMA1-212ENST00000552491 ZMAT5Q9UDW3 170 aaKnown RBP4.77□□□□□ -1.65
LIMA1-212ENST00000552491 FBXL17Q9UF56 701 aa4.77□□□□□ -1.65
LIMA1-212ENST00000552491 CD207Q9UJ71 328 aa4.77□□□□□ -1.65
LIMA1-212ENST00000552491 AMDHD2Q9Y303 409 aa4.77□□□□□ -1.65
LIMA1-212ENST00000552491 TNFSF12-TNFSF13A0A0A6YY99 330 aa4.76□□□□□ -1.65
LIMA1-212ENST00000552491 MED19A0JLT2 244 aaPredicted RBP4.76□□□□□ -1.65
LIMA1-212ENST00000552491 LILRA5A6NI73 299 aa4.76□□□□□ -1.65
LIMA1-212ENST00000552491 FIGNL2A6NMB9 653 aa4.76□□□□□ -1.65
LIMA1-212ENST00000552491 MASP2O00187 686 aa4.76□□□□□ -1.65
LIMA1-212ENST00000552491 ZNF205O95201 554 aa4.76□□□□□ -1.65
LIMA1-212ENST00000552491 CST4P01036 141 aa4.76□□□□□ -1.65
LIMA1-212ENST00000552491 HPNP05981 417 aa4.76□□□□□ -1.65
LIMA1-212ENST00000552491 HCKP08631 526 aa4.76□□□□□ -1.65
LIMA1-212ENST00000552491 FOLR1P15328 257 aa4.76□□□□□ -1.65
LIMA1-212ENST00000552491 DRD1P21728 446 aa4.76□□□□□ -1.65
LIMA1-212ENST00000552491 CPT2P23786 658 aa4.76□□□□□ -1.65
LIMA1-212ENST00000552491 RGS19P49795 217 aa4.76□□□□□ -1.65
LIMA1-212ENST00000552491 DVL1P1P54792 670 aaPredicted RBP4.76□□□□□ -1.65
LIMA1-212ENST00000552491 CSNK2A1P68400 391 aaPredicted RBP4.76□□□□□ -1.65
LIMA1-212ENST00000552491 RNF4P78317 190 aa4.76□□□□□ -1.65
LIMA1-212ENST00000552491 TSC22D1Q15714 1073 aa4.76□□□□□ -1.65
LIMA1-212ENST00000552491 DEFB133Q30KQ1 61 aa4.76□□□□□ -1.65
LIMA1-212ENST00000552491 CARD17Q5XLA6 110 aa4.76□□□□□ -1.65
LIMA1-212ENST00000552491 PPP1R3BQ86XI6 285 aa4.76□□□□□ -1.65
LIMA1-212ENST00000552491 FAM89BQ8N5H3 189 aa4.76□□□□□ -1.65
LIMA1-212ENST00000552491 CSNK2A3Q8NEV1 391 aa4.76□□□□□ -1.65
LIMA1-212ENST00000552491 OR56B1Q8NGI3 324 aa4.76□□□□□ -1.65
LIMA1-212ENST00000552491 LYPD6BQ8NI32 183 aa4.76□□□□□ -1.65
LIMA1-212ENST00000552491 RHBDD1Q8TEB9 315 aa4.76□□□□□ -1.65
LIMA1-212ENST00000552491 SLC25A43Q8WUT9 341 aaPredicted RBP4.76□□□□□ -1.65
LIMA1-212ENST00000552491 C5orf34Q96MH7 638 aa4.76□□□□□ -1.65
LIMA1-212ENST00000552491 PSMG3-AS1Q96PY0 264 aa4.76□□□□□ -1.65
LIMA1-212ENST00000552491 CDCA3Q99618 268 aaPredicted RBP4.76□□□□□ -1.65
LIMA1-212ENST00000552491 SULT4A1Q9BR01 284 aa4.76□□□□□ -1.65
LIMA1-212ENST00000552491 HDHD3Q9BSH5 251 aaPredicted RBP4.76□□□□□ -1.65
LIMA1-212ENST00000552491 CHRNA10Q9GZZ6 450 aa4.76□□□□□ -1.65
LIMA1-212ENST00000552491 MOB1AQ9H8S9 216 aa4.76□□□□□ -1.65
LIMA1-212ENST00000552491 UCK1Q9HA47 277 aa4.76□□□□□ -1.65
LIMA1-212ENST00000552491 EHFQ9NZC4 300 aa4.76□□□□□ -1.65
LIMA1-212ENST00000552491 ZNF581Q9P0T4 197 aa4.76□□□□□ -1.65
LIMA1-212ENST00000552491 COPS7AQ9UBW8 275 aa4.76□□□□□ -1.65
LIMA1-212ENST00000552491 MMP17Q9ULZ9 603 aa4.76□□□□□ -1.65
LIMA1-212ENST00000552491 EDARQ9UNE0 448 aa4.76□□□□□ -1.65
LIMA1-212ENST00000552491 MEMO1Q9Y316 297 aa4.76□□□□□ -1.65
LIMA1-212ENST00000552491 TIMM10BQ9Y5J6 103 aa4.76□□□□□ -1.65
LIMA1-212ENST00000552491 A0A1W2PNR3 127 aa4.76□□□□□ -1.65
LIMA1-212ENST00000552491 A0A1W2PPC4 97 aa4.76□□□□□ -1.65
LIMA1-212ENST00000552491 ANKUB1A6NFN9 424 aa4.76□□□□□ -1.65
LIMA1-212ENST00000552491 A6NLC8 198 aa4.76□□□□□ -1.65
LIMA1-212ENST00000552491 DHRS7CA6NNS2 312 aa4.76□□□□□ -1.65
LIMA1-212ENST00000552491 C1QL1O75973 258 aa4.76□□□□□ -1.65
LIMA1-212ENST00000552491 S100A8P05109 93 aa4.76□□□□□ -1.65
LIMA1-212ENST00000552491 PGA4P0DJD7 388 aa4.76□□□□□ -1.65
LIMA1-212ENST00000552491 PGA3P0DJD8 388 aa4.76□□□□□ -1.65
LIMA1-212ENST00000552491 MYF5P13349 255 aa4.76□□□□□ -1.65
LIMA1-212ENST00000552491 PTAFRP25105 342 aa4.76□□□□□ -1.65
LIMA1-212ENST00000552491 RPL12P30050 165 aaKnown RBP4.76□□□□□ -1.65
LIMA1-212ENST00000552491 FCGR2CP31995 323 aa4.76□□□□□ -1.65
LIMA1-212ENST00000552491 APOBEC1P41238 236 aaKnown RBP4.76□□□□□ -1.65
LIMA1-212ENST00000552491 OR3A2P47893 321 aa4.76□□□□□ -1.65
LIMA1-212ENST00000552491 CCR5P51681 352 aa4.76□□□□□ -1.65
LIMA1-212ENST00000552491 TMEM33P57088 247 aa4.76□□□□□ -1.65
LIMA1-212ENST00000552491 HSD11B2P80365 405 aa4.76□□□□□ -1.65
LIMA1-212ENST00000552491 MYBPHQ13203 477 aa4.76□□□□□ -1.65
LIMA1-212ENST00000552491 HMGN3Q15651 99 aa4.76□□□□□ -1.65
LIMA1-212ENST00000552491 IAH1Q2TAA2 248 aaPredicted RBP4.76□□□□□ -1.65
LIMA1-212ENST00000552491 RNF212Q495C1 297 aa4.76□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms