RNA–Protein interactions for RNA: ENST00000539506.5

SFSWAP-208, Transcript of splicing factor SWAP, humanhuman

TSL 5

Gene SFSWAP, Length 3,149 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-208ENST00000539506 CACNA1EQ15878 2313 aa11.07□□□□□ -0.64
SFSWAP-208ENST00000539506 C5orf63A6NC05 138 aa11.07□□□□□ -0.64
SFSWAP-208ENST00000539506 NPIPB13A6NJU9 1138 aa11.07□□□□□ -0.64
SFSWAP-208ENST00000539506 NPIPB4C9JG80 1138 aa11.07□□□□□ -0.64
SFSWAP-208ENST00000539506 SNAPC5O75971 98 aa11.07□□□□□ -0.64
SFSWAP-208ENST00000539506 DUS4LO95620 317 aaKnown RBP11.07□□□□□ -0.64
SFSWAP-208ENST00000539506 TMEM244Q5VVB8 128 aa11.07□□□□□ -0.64
SFSWAP-208ENST00000539506 DEGS2Q6QHC5 323 aa11.07□□□□□ -0.64
SFSWAP-208ENST00000539506 RABEPKQ7Z6M1 372 aa11.07□□□□□ -0.64
SFSWAP-208ENST00000539506 CD300LFQ8TDQ1 290 aa11.07□□□□□ -0.64
SFSWAP-208ENST00000539506 ARHGAP5-AS1Q96IT6 56 aa11.07□□□□□ -0.64
SFSWAP-208ENST00000539506 ALKBH4Q9NXW9 302 aa11.07□□□□□ -0.64
SFSWAP-208ENST00000539506 MYOTQ9UBF9 498 aa11.07□□□□□ -0.64
SFSWAP-208ENST00000539506 SRPK3Q9UPE1 567 aa11.07□□□□□ -0.64
SFSWAP-208ENST00000539506 B3GALT1Q9Y5Z6 326 aa11.07□□□□□ -0.64
SFSWAP-208ENST00000539506 RALGAPA1Q6GYQ0 2036 aa11.06□□□□□ -0.64
SFSWAP-208ENST00000539506 TEX13DA0A0J9YY54 714 aaPredicted RBP11.06□□□□□ -0.64
SFSWAP-208ENST00000539506 MEGF11A6BM72 1044 aa11.06□□□□□ -0.64
SFSWAP-208ENST00000539506 E9PLN8 166 aa11.06□□□□□ -0.64
SFSWAP-208ENST00000539506 CRTAPO75718 401 aaPredicted RBP11.06□□□□□ -0.64
SFSWAP-208ENST00000539506 ZNF17P17021 662 aa11.06□□□□□ -0.64
SFSWAP-208ENST00000539506 BTF3P20290 206 aaKnown RBP11.06□□□□□ -0.64
SFSWAP-208ENST00000539506 RAB5BP61020 215 aa11.06□□□□□ -0.64
SFSWAP-208ENST00000539506 CCL7P80098 99 aa11.06□□□□□ -0.64
SFSWAP-208ENST00000539506 DCDP81605 110 aaKnown RBP11.06□□□□□ -0.64
SFSWAP-208ENST00000539506 DNM1P34Q6PK57 102 aa11.06□□□□□ -0.64
SFSWAP-208ENST00000539506 EIF5A2Q9GZV4 153 aaKnown RBP11.06□□□□□ -0.64
SFSWAP-208ENST00000539506 PPP4R1LQ9P1A2 415 aa11.06□□□□□ -0.64
SFSWAP-208ENST00000539506 B3GALT5Q9Y2C3 310 aa11.06□□□□□ -0.64
SFSWAP-208ENST00000539506 IGHV5-10-1A0A0J9YXX1 117 aa11.06□□□□□ -0.64
SFSWAP-208ENST00000539506 A0A1W2PNV4 684 aa11.06□□□□□ -0.64
SFSWAP-208ENST00000539506 PGA4P0DJD7 388 aa11.06□□□□□ -0.64
SFSWAP-208ENST00000539506 PGA3P0DJD8 388 aa11.06□□□□□ -0.64
SFSWAP-208ENST00000539506 OR13C7P0DN81 318 aa11.06□□□□□ -0.64
SFSWAP-208ENST00000539506 MEF2DQ14814 521 aa11.06□□□□□ -0.64
SFSWAP-208ENST00000539506 CDPF1Q6NVV7 123 aa11.06□□□□□ -0.64
SFSWAP-208ENST00000539506 ZNF529Q6P280 563 aa11.06□□□□□ -0.64
SFSWAP-208ENST00000539506 BRICD5Q6PL45 260 aa11.06□□□□□ -0.64
SFSWAP-208ENST00000539506 BATF2Q8N1L9 274 aa11.06□□□□□ -0.64
SFSWAP-208ENST00000539506 SPEM1Q8N4L4 309 aa11.06□□□□□ -0.64
SFSWAP-208ENST00000539506 AKR7LQ8NHP1 331 aa11.06□□□□□ -0.64
SFSWAP-208ENST00000539506 REEP6Q96HR9 211 aa11.06□□□□□ -0.64
SFSWAP-208ENST00000539506 SEC11CQ9BY50 192 aa11.06□□□□□ -0.64
SFSWAP-208ENST00000539506 POLR1DQ9Y2S0 133 aa11.06□□□□□ -0.64
SFSWAP-208ENST00000539506 ADAMTS9Q9P2N4 1935 aa11.06□□□□□ -0.64
SFSWAP-208ENST00000539506 A0A1W2PPE2 198 aa11.05□□□□□ -0.64
SFSWAP-208ENST00000539506 C1orf196B1AJZ1 125 aa11.05□□□□□ -0.64
SFSWAP-208ENST00000539506 TRAF3IP2O43734 574 aaPredicted RBP11.05□□□□□ -0.64
SFSWAP-208ENST00000539506 CELA2AP08217 269 aa11.05□□□□□ -0.64
SFSWAP-208ENST00000539506 LAP3P28838 519 aa11.05□□□□□ -0.64
SFSWAP-208ENST00000539506 ZNF93P35789 620 aaPredicted RBP11.05□□□□□ -0.64
SFSWAP-208ENST00000539506 SUMO3P55854 103 aaPredicted RBP11.05□□□□□ -0.64
SFSWAP-208ENST00000539506 PDZD11Q5EBL8 140 aa11.05□□□□□ -0.64
SFSWAP-208ENST00000539506 ACER2Q5QJU3 275 aa11.05□□□□□ -0.64
SFSWAP-208ENST00000539506 CPEB2Q7Z5Q1 589 aaKnown RBP11.05□□□□□ -0.64
SFSWAP-208ENST00000539506 DTX1Q86Y01 620 aa11.05□□□□□ -0.64
SFSWAP-208ENST00000539506 WDSUB1Q8N9V3 476 aa11.05□□□□□ -0.64
SFSWAP-208ENST00000539506 SLC30A7Q8NEW0 376 aa11.05□□□□□ -0.64
SFSWAP-208ENST00000539506 HIST1H2BAQ96A08 127 aa11.05□□□□□ -0.64
SFSWAP-208ENST00000539506 ZNF701Q9NV72 531 aaPredicted RBP11.05□□□□□ -0.64
SFSWAP-208ENST00000539506 FBXO7Q9Y3I1 522 aa11.05□□□□□ -0.64
SFSWAP-208ENST00000539506 CCDC163A0A0D9SF12 145 aa11.05□□□□□ -0.64
SFSWAP-208ENST00000539506 RER1O15258 196 aa11.05□□□□□ -0.64
SFSWAP-208ENST00000539506 XRCC2O43543 280 aa11.05□□□□□ -0.64
SFSWAP-208ENST00000539506 DKK1O94907 266 aa11.05□□□□□ -0.64
SFSWAP-208ENST00000539506 HCKP08631 526 aa11.05□□□□□ -0.64
SFSWAP-208ENST00000539506 OR3A2P47893 321 aa11.05□□□□□ -0.64
SFSWAP-208ENST00000539506 SUPT4H1P63272 117 aaKnown RBP11.05□□□□□ -0.64
SFSWAP-208ENST00000539506 SLC25A53Q5H9E4 307 aa11.05□□□□□ -0.64
SFSWAP-208ENST00000539506 LPCAT3Q6P1A2 487 aa11.05□□□□□ -0.64
SFSWAP-208ENST00000539506 TERB2Q8NHR7 220 aa11.05□□□□□ -0.64
SFSWAP-208ENST00000539506 EDAQ92838 391 aa11.05□□□□□ -0.64
SFSWAP-208ENST00000539506 PTX4Q96A99 478 aa11.05□□□□□ -0.64
SFSWAP-208ENST00000539506 KIRREL1Q96J84 757 aa11.05□□□□□ -0.64
SFSWAP-208ENST00000539506 HDHD3Q9BSH5 251 aaPredicted RBP11.05□□□□□ -0.64
SFSWAP-208ENST00000539506 RAB22AQ9UL26 194 aa11.05□□□□□ -0.64
SFSWAP-208ENST00000539506 WIF1Q9Y5W5 379 aa11.05□□□□□ -0.64
SFSWAP-208ENST00000539506 EML6Q6ZMW3 1958 aa11.05□□□□□ -0.64
SFSWAP-208ENST00000539506 IL2RAP01589 272 aa11.04□□□□□ -0.64
SFSWAP-208ENST00000539506 AMY2BP19961 511 aa11.04□□□□□ -0.64
SFSWAP-208ENST00000539506 ZNF41P51814 821 aaPredicted RBP11.04□□□□□ -0.64
SFSWAP-208ENST00000539506 TSPO2Q5TGU0 170 aa11.04□□□□□ -0.64
SFSWAP-208ENST00000539506 C1QL2Q7Z5L3 287 aa11.04□□□□□ -0.64
SFSWAP-208ENST00000539506 ABHD12BQ7Z5M8 362 aaPredicted RBP11.04□□□□□ -0.64
SFSWAP-208ENST00000539506 NKAIN3Q8N8D7 197 aa11.04□□□□□ -0.64
SFSWAP-208ENST00000539506 LIN37Q96GY3 246 aaPredicted RBP11.04□□□□□ -0.64
SFSWAP-208ENST00000539506 SPACA1Q9HBV2 294 aa11.04□□□□□ -0.64
SFSWAP-208ENST00000539506 PNRC2Q9NPJ4 139 aaKnown RBP11.04□□□□□ -0.64
SFSWAP-208ENST00000539506 MRPS17Q9Y2R5 130 aaKnown RBP11.04□□□□□ -0.64
SFSWAP-208ENST00000539506 CARHSP1Q9Y2V2 147 aaKnown RBP11.04□□□□□ -0.64
SFSWAP-208ENST00000539506 A0A0A6YYH2 397 aa11.04□□□□□ -0.64
SFSWAP-208ENST00000539506 A6NJ64 397 aa11.04□□□□□ -0.64
SFSWAP-208ENST00000539506 YIF1AO95070 293 aa11.04□□□□□ -0.64
SFSWAP-208ENST00000539506 DIRAS3O95661 229 aa11.04□□□□□ -0.64
SFSWAP-208ENST00000539506 HSD11B1P28845 292 aa11.04□□□□□ -0.64
SFSWAP-208ENST00000539506 SFTPDP35247 375 aa11.04□□□□□ -0.64
SFSWAP-208ENST00000539506 NOVA1P51513 510 aaKnown RBP11.04□□□□□ -0.64
SFSWAP-208ENST00000539506 CAV2P51636 162 aa11.04□□□□□ -0.64
SFSWAP-208ENST00000539506 TMEM50BP56557 158 aa11.04□□□□□ -0.64
SFSWAP-208ENST00000539506 AWAT1Q58HT5 328 aa11.04□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 108.2 ms