RNA–Protein interactions for RNA: ENST00000539244.6

SS18-204, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 977 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-204ENST00000539244 OR2AT4A6NND4 320 aa11.04□□□□□ -0.64
SS18-204ENST00000539244 RIIAD1A6NNX1 92 aa11.04□□□□□ -0.64
SS18-204ENST00000539244 ZNF850A8MQ14 1090 aa11.04□□□□□ -0.64
SS18-204ENST00000539244 CCNB2O95067 398 aa11.04□□□□□ -0.64
SS18-204ENST00000539244 TFF1P04155 84 aa11.04□□□□□ -0.64
SS18-204ENST00000539244 ZNF3P17036 446 aa11.04□□□□□ -0.64
SS18-204ENST00000539244 NDUFB7P17568 137 aa11.04□□□□□ -0.64
SS18-204ENST00000539244 GSTT1P30711 240 aa11.04□□□□□ -0.64
SS18-204ENST00000539244 GMFBP60983 142 aa11.04□□□□□ -0.64
SS18-204ENST00000539244 GFOD2Q3B7J2 385 aa11.04□□□□□ -0.64
SS18-204ENST00000539244 SPATS1Q496A3 300 aa11.04□□□□□ -0.64
SS18-204ENST00000539244 LIAT1Q6ZQX7 453 aa11.04□□□□□ -0.64
SS18-204ENST00000539244 ERI1Q8IV48 349 aaKnown RBP11.04□□□□□ -0.64
SS18-204ENST00000539244 TIGD4Q8IY51 512 aa11.04□□□□□ -0.64
SS18-204ENST00000539244 KLHDC1Q8N7A1 406 aa11.04□□□□□ -0.64
SS18-204ENST00000539244 AQP11Q8NBQ7 271 aa11.04□□□□□ -0.64
SS18-204ENST00000539244 PAPD5Q8NDF8 572 aaKnown RBP11.04□□□□□ -0.64
SS18-204ENST00000539244 OR2T6Q8NHC8 308 aa11.04□□□□□ -0.64
SS18-204ENST00000539244 PGAM5Q96HS1 289 aa11.04□□□□□ -0.64
SS18-204ENST00000539244 RNF170Q96K19 258 aa11.04□□□□□ -0.64
SS18-204ENST00000539244 ARMC1Q9NVT9 282 aa11.04□□□□□ -0.64
SS18-204ENST00000539244 DNAJC27Q9NZQ0 273 aa11.04□□□□□ -0.64
SS18-204ENST00000539244 IGKV1D-17A0A075B6S4 117 aa11.03□□□□□ -0.64
SS18-204ENST00000539244 PIN1P1O15428 100 aa11.03□□□□□ -0.64
SS18-204ENST00000539244 GLCEO94923 617 aa11.03□□□□□ -0.64
SS18-204ENST00000539244 H2BFMP0C1H6 154 aa11.03□□□□□ -0.64
SS18-204ENST00000539244 PSG2P11465 335 aa11.03□□□□□ -0.64
SS18-204ENST00000539244 GLRA1P23415 457 aa11.03□□□□□ -0.64
SS18-204ENST00000539244 FAM189A2Q15884 450 aa11.03□□□□□ -0.64
SS18-204ENST00000539244 LY6EQ16553 131 aa11.03□□□□□ -0.64
SS18-204ENST00000539244 ZDHHC23Q8IYP9 409 aa11.03□□□□□ -0.64
SS18-204ENST00000539244 ZNRF1Q8ND25 227 aa11.03□□□□□ -0.64
SS18-204ENST00000539244 OR5K1Q8NHB7 308 aa11.03□□□□□ -0.64
SS18-204ENST00000539244 PIGCQ92535 297 aa11.03□□□□□ -0.64
SS18-204ENST00000539244 RORBQ92753 470 aa11.03□□□□□ -0.64
SS18-204ENST00000539244 ITFG2Q969R8 447 aa11.03□□□□□ -0.64
SS18-204ENST00000539244 SDSLQ96GA7 329 aa11.03□□□□□ -0.64
SS18-204ENST00000539244 LYZL4Q96KX0 146 aa11.03□□□□□ -0.64
SS18-204ENST00000539244 CDRT15Q96T59 188 aa11.03□□□□□ -0.64
SS18-204ENST00000539244 NPFFR1Q9GZQ6 430 aa11.03□□□□□ -0.64
SS18-204ENST00000539244 BRD7Q9NPI1 651 aa11.03□□□□□ -0.64
SS18-204ENST00000539244 LRP12Q9Y561 859 aa11.03□□□□□ -0.64
SS18-204ENST00000539244 H0YAE9 185 aa11.02□□□□□ -0.65
SS18-204ENST00000539244 ANGPTL7O43827 346 aa11.02□□□□□ -0.65
SS18-204ENST00000539244 RHBDL1O75783 438 aa11.02□□□□□ -0.65
SS18-204ENST00000539244 ALX3O95076 343 aa11.02□□□□□ -0.65
SS18-204ENST00000539244 SOX14O95416 240 aa11.02□□□□□ -0.65
SS18-204ENST00000539244 LYNP07948 512 aa11.02□□□□□ -0.65
SS18-204ENST00000539244 POU1F1P28069 291 aa11.02□□□□□ -0.65
SS18-204ENST00000539244 PSMA6P60900 246 aaKnown RBP11.02□□□□□ -0.65
SS18-204ENST00000539244 GNG3P63215 75 aa11.02□□□□□ -0.65
SS18-204ENST00000539244 MICAQ29983 383 aa11.02□□□□□ -0.65
SS18-204ENST00000539244 CD300LDQ6UXZ3 194 aa11.02□□□□□ -0.65
SS18-204ENST00000539244 KCTD8Q6ZWB6 473 aa11.02□□□□□ -0.65
SS18-204ENST00000539244 CPLX4Q7Z7G2 160 aa11.02□□□□□ -0.65
SS18-204ENST00000539244 Q8N2B8 174 aa11.02□□□□□ -0.65
SS18-204ENST00000539244 C11orf42Q8N5U0 333 aa11.02□□□□□ -0.65
SS18-204ENST00000539244 C11orf44Q8N8P7 122 aa11.02□□□□□ -0.65
SS18-204ENST00000539244 ZNF454Q8N9F8 522 aa11.02□□□□□ -0.65
SS18-204ENST00000539244 OTOSQ8NHW6 89 aa11.02□□□□□ -0.65
SS18-204ENST00000539244 PIFOQ8TCI5 191 aa11.02□□□□□ -0.65
SS18-204ENST00000539244 CLPTM1LQ96KA5 538 aa11.02□□□□□ -0.65
SS18-204ENST00000539244 ELAC2Q9BQ52 826 aaKnown RBP11.02□□□□□ -0.65
SS18-204ENST00000539244 OR51I2Q9H344 312 aa11.02□□□□□ -0.65
SS18-204ENST00000539244 NIPAL2Q9H841 368 aa11.02□□□□□ -0.65
SS18-204ENST00000539244 MED20Q9H944 212 aa11.02□□□□□ -0.65
SS18-204ENST00000539244 ELL3Q9HB65 397 aaPredicted RBP11.02□□□□□ -0.65
SS18-204ENST00000539244 ZNF446Q9NWS9 450 aa11.02□□□□□ -0.65
SS18-204ENST00000539244 FAM183AA6NL82 134 aa11.01□□□□□ -0.65
SS18-204ENST00000539244 VGLL3A8MV65 326 aa11.01□□□□□ -0.65
SS18-204ENST00000539244 XPNPEP2O43895 674 aa11.01□□□□□ -0.65
SS18-204ENST00000539244 CHST1O43916 411 aa11.01□□□□□ -0.65
SS18-204ENST00000539244 PRB2P02812 416 aaPredicted RBP11.01□□□□□ -0.65
SS18-204ENST00000539244 GABRA2P47869 451 aa11.01□□□□□ -0.65
SS18-204ENST00000539244 GPM6AP51674 278 aa11.01□□□□□ -0.65
SS18-204ENST00000539244 THAP5Q7Z6K1 395 aa11.01□□□□□ -0.65
SS18-204ENST00000539244 HIST2H2ABQ8IUE6 130 aaPredicted RBP11.01□□□□□ -0.65
SS18-204ENST00000539244 MKXQ8IYA7 352 aa11.01□□□□□ -0.65
SS18-204ENST00000539244 TMEM185AQ8NFB2 350 aa11.01□□□□□ -0.65
SS18-204ENST00000539244 OR8B12Q8NGG6 310 aa11.01□□□□□ -0.65
SS18-204ENST00000539244 WIPF2Q8TF74 440 aaPredicted RBP11.01□□□□□ -0.65
SS18-204ENST00000539244 HIST1H2AAQ96QV6 131 aa11.01□□□□□ -0.65
SS18-204ENST00000539244 CDCA4Q9BXL8 241 aa11.01□□□□□ -0.65
SS18-204ENST00000539244 MAGIXQ9H6Y5 334 aa11.01□□□□□ -0.65
SS18-204ENST00000539244 HEXA-AS1Q9H8Q6 139 aa11.01□□□□□ -0.65
SS18-204ENST00000539244 C19orf12Q9NSK7 152 aa11.01□□□□□ -0.65
SS18-204ENST00000539244 SERTAD4Q9NUC0 356 aa11.01□□□□□ -0.65
SS18-204ENST00000539244 ACTR3BQ9P1U1 418 aa11.01□□□□□ -0.65
SS18-204ENST00000539244 TCRBV5S2A0A599 114 aa11□□□□□ -0.65
SS18-204ENST00000539244 MTRF1O75570 445 aaKnown RBP11□□□□□ -0.65
SS18-204ENST00000539244 ATP6V1B2P21281 511 aa11□□□□□ -0.65
SS18-204ENST00000539244 PPP1R8Q12972 351 aaKnown RBP11□□□□□ -0.65
SS18-204ENST00000539244 CEACAM21Q3KPI0 293 aa11□□□□□ -0.65
SS18-204ENST00000539244 FAM185AQ8N0U4 392 aa11□□□□□ -0.65
SS18-204ENST00000539244 ZNF671Q8TAW3 534 aa11□□□□□ -0.65
SS18-204ENST00000539244 TEX47Q8TBZ9 253 aa11□□□□□ -0.65
SS18-204ENST00000539244 AQP3Q92482 292 aa11□□□□□ -0.65
SS18-204ENST00000539244 NIPSNAP1Q9BPW8 284 aa11□□□□□ -0.65
SS18-204ENST00000539244 ZNF702PQ9H963 129 aa11□□□□□ -0.65
SS18-204ENST00000539244 VNN3Q9NY84 501 aa11□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms