RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 PLEKHN1Q494U1 663 aaPredicted RBP17.89■□□□□ 0.45
VPS28-209ENST00000528142 ASCL4Q6XD76 172 aa17.89■□□□□ 0.45
VPS28-209ENST00000528142 ZNF782Q6ZMW2 699 aaPredicted RBP17.89■□□□□ 0.45
VPS28-209ENST00000528142 TRAPPC6BQ86SZ2 158 aa17.89■□□□□ 0.45
VPS28-209ENST00000528142 OR6K3Q8NGY3 331 aa17.89■□□□□ 0.45
VPS28-209ENST00000528142 NUDCD2Q8WVJ2 157 aa17.89■□□□□ 0.45
VPS28-209ENST00000528142 RAB3CQ96E17 227 aa17.89■□□□□ 0.45
VPS28-209ENST00000528142 CPNE2Q96FN4 548 aaPredicted RBP17.89■□□□□ 0.45
VPS28-209ENST00000528142 KCNN3Q9UGI6 736 aa17.89■□□□□ 0.45
VPS28-209ENST00000528142 GSTP1P09211 210 aaKnown RBP17.88■□□□□ 0.45
VPS28-209ENST00000528142 HIST1H1DP16402 221 aaKnown RBP17.88■□□□□ 0.45
VPS28-209ENST00000528142 APLNRP35414 380 aa17.88■□□□□ 0.45
VPS28-209ENST00000528142 NKX2-5P52952 324 aaPredicted RBP17.88■□□□□ 0.45
VPS28-209ENST00000528142 TGFBR3Q03167 851 aa17.88■□□□□ 0.45
VPS28-209ENST00000528142 ST3GAL2Q16842 350 aa17.88■□□□□ 0.45
VPS28-209ENST00000528142 OR2A2Q6IF42 318 aa17.88■□□□□ 0.45
VPS28-209ENST00000528142 MOB3CQ70IA8 216 aa17.88■□□□□ 0.45
VPS28-209ENST00000528142 TCTE3Q8IZS6 198 aa17.88■□□□□ 0.45
VPS28-209ENST00000528142 CNEP1R1Q8N9A8 125 aa17.88■□□□□ 0.45
VPS28-209ENST00000528142 PIGCQ92535 297 aa17.88■□□□□ 0.45
VPS28-209ENST00000528142 BORCS8Q96FH0 119 aa17.88■□□□□ 0.45
VPS28-209ENST00000528142 DMRTB1Q96MA1 342 aa17.88■□□□□ 0.45
VPS28-209ENST00000528142 TECTBQ96PL2 329 aa17.88■□□□□ 0.45
VPS28-209ENST00000528142 S100A13Q99584 98 aa17.88■□□□□ 0.45
VPS28-209ENST00000528142 MED12LQ86YW9 2145 aa17.88■□□□□ 0.45
VPS28-209ENST00000528142 MFNGO00587 321 aa17.88■□□□□ 0.45
VPS28-209ENST00000528142 PRAF2O60831 178 aa17.88■□□□□ 0.45
VPS28-209ENST00000528142 RAB3DO95716 219 aa17.88■□□□□ 0.45
VPS28-209ENST00000528142 CYB5AP00167 134 aa17.88■□□□□ 0.45
VPS28-209ENST00000528142 TMEM225BP0DP42 221 aa17.88■□□□□ 0.45
VPS28-209ENST00000528142 SERPINA2P20848 420 aa17.88■□□□□ 0.45
VPS28-209ENST00000528142 PLA2G5P39877 138 aa17.88■□□□□ 0.45
VPS28-209ENST00000528142 WNT5AP41221 380 aa17.88■□□□□ 0.45
VPS28-209ENST00000528142 FUT6P51993 359 aa17.88■□□□□ 0.45
VPS28-209ENST00000528142 FOXF2Q12947 444 aa17.88■□□□□ 0.45
VPS28-209ENST00000528142 MALLQ13021 153 aa17.88■□□□□ 0.45
VPS28-209ENST00000528142 RBMS2Q15434 407 aaKnown RBP17.88■□□□□ 0.45
VPS28-209ENST00000528142 ZNF585AQ6P3V2 769 aa17.88■□□□□ 0.45
VPS28-209ENST00000528142 VWA1Q6PCB0 445 aa17.88■□□□□ 0.45
VPS28-209ENST00000528142 CCDC36Q8IYA8 594 aa17.88■□□□□ 0.45
VPS28-209ENST00000528142 STEAP2Q8NFT2 490 aa17.88■□□□□ 0.45
VPS28-209ENST00000528142 OR56B2PQ8NGI1 322 aa17.88■□□□□ 0.45
VPS28-209ENST00000528142 OR51S1Q8NGJ8 323 aa17.88■□□□□ 0.45
VPS28-209ENST00000528142 OR51T1Q8NGJ9 327 aa17.88■□□□□ 0.45
VPS28-209ENST00000528142 MED28Q9H204 178 aa17.88■□□□□ 0.45
VPS28-209ENST00000528142 BEX1Q9HBH7 125 aa17.88■□□□□ 0.45
VPS28-209ENST00000528142 NPDC1Q9NQX5 325 aaPredicted RBP17.88■□□□□ 0.45
VPS28-209ENST00000528142 RAXQ9Y2V3 346 aa17.88■□□□□ 0.45
VPS28-209ENST00000528142 ZNF736B4DX44 427 aaPredicted RBP17.87■□□□□ 0.45
VPS28-209ENST00000528142 MKRN2OSH3BPM6 223 aa17.87■□□□□ 0.45
VPS28-209ENST00000528142 RAD51DO75771 328 aa17.87■□□□□ 0.45
VPS28-209ENST00000528142 ZNF735P0CB33 412 aa17.87■□□□□ 0.45
VPS28-209ENST00000528142 HLXQ14774 488 aaPredicted RBP17.87■□□□□ 0.45
VPS28-209ENST00000528142 FCN2Q15485 313 aa17.87■□□□□ 0.45
VPS28-209ENST00000528142 GABRA6Q16445 453 aa17.87■□□□□ 0.45
VPS28-209ENST00000528142 SEM1Q6ZVN7 128 aa17.87■□□□□ 0.45
VPS28-209ENST00000528142 BEST4Q8NFU0 473 aa17.87■□□□□ 0.45
VPS28-209ENST00000528142 FAM122AQ96E09 287 aa17.87■□□□□ 0.45
VPS28-209ENST00000528142 BOD1Q96IK1 185 aa17.87■□□□□ 0.45
VPS28-209ENST00000528142 GPR137Q96N19 417 aa17.87■□□□□ 0.45
VPS28-209ENST00000528142 TINAGL1Q9GZM7 467 aaPredicted RBP17.87■□□□□ 0.45
VPS28-209ENST00000528142 POFUT1Q9H488 388 aa17.87■□□□□ 0.45
VPS28-209ENST00000528142 PLSCR4Q9NRQ2 329 aa17.87■□□□□ 0.45
VPS28-209ENST00000528142 SLC7A11Q9UPY5 501 aa17.87■□□□□ 0.45
VPS28-209ENST00000528142 CACNA1AO00555 2505 aa17.86■□□□□ 0.45
VPS28-209ENST00000528142 A0A1B0GUH1 482 aa17.86■□□□□ 0.45
VPS28-209ENST00000528142 CRYABP02511 175 aaKnown RBP17.86■□□□□ 0.45
VPS28-209ENST00000528142 HPXP02790 462 aa17.86■□□□□ 0.45
VPS28-209ENST00000528142 ZNF14P17017 642 aaPredicted RBP17.86■□□□□ 0.45
VPS28-209ENST00000528142 CBX3Q13185 183 aa17.86■□□□□ 0.45
VPS28-209ENST00000528142 KCNJ8Q15842 424 aa17.86■□□□□ 0.45
VPS28-209ENST00000528142 PNLIPRP3Q17RR3 467 aa17.86■□□□□ 0.45
VPS28-209ENST00000528142 ZFP69Q49AA0 526 aa17.86■□□□□ 0.45
VPS28-209ENST00000528142 CD276Q5ZPR3 534 aa17.86■□□□□ 0.45
VPS28-209ENST00000528142 PLCXD3Q63HM9 321 aa17.86■□□□□ 0.45
VPS28-209ENST00000528142 MRPL21Q7Z2W9 205 aaKnown RBP17.86■□□□□ 0.45
VPS28-209ENST00000528142 PIAS4Q8N2W9 510 aaPredicted RBP17.86■□□□□ 0.45
VPS28-209ENST00000528142 GVQW1Q8N7I0 195 aa17.86■□□□□ 0.45
VPS28-209ENST00000528142 SLC30A7Q8NEW0 376 aa17.86■□□□□ 0.45
VPS28-209ENST00000528142 OR4S1Q8NGB4 309 aa17.86■□□□□ 0.45
VPS28-209ENST00000528142 WBP1Q96G27 269 aa17.86■□□□□ 0.45
VPS28-209ENST00000528142 ARHGAP5-AS1Q96IT6 56 aa17.86■□□□□ 0.45
VPS28-209ENST00000528142 CYYR1Q96J86 154 aa17.86■□□□□ 0.45
VPS28-209ENST00000528142 METTL9Q9H1A3 318 aa17.86■□□□□ 0.45
VPS28-209ENST00000528142 ELL3Q9HB65 397 aaPredicted RBP17.86■□□□□ 0.45
VPS28-209ENST00000528142 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP17.86■□□□□ 0.45
VPS28-209ENST00000528142 PTTG3PQ9NZH4 202 aa17.86■□□□□ 0.45
VPS28-209ENST00000528142 ANAPC10Q9UM13 185 aa17.86■□□□□ 0.45
VPS28-209ENST00000528142 MBD3L4A6NDZ8 208 aaPredicted RBP17.86■□□□□ 0.45
VPS28-209ENST00000528142 MBD3L3A6NE82 208 aaPredicted RBP17.86■□□□□ 0.45
VPS28-209ENST00000528142 MBD3L5A6NJ08 208 aaPredicted RBP17.86■□□□□ 0.45
VPS28-209ENST00000528142 ZNF850A8MQ14 1090 aa17.86■□□□□ 0.45
VPS28-209ENST00000528142 K7ENP7 123 aa17.86■□□□□ 0.45
VPS28-209ENST00000528142 M0QYG6 137 aa17.86■□□□□ 0.45
VPS28-209ENST00000528142 SPRY1O43609 319 aaPredicted RBP17.86■□□□□ 0.45
VPS28-209ENST00000528142 ANGPTL7O43827 346 aa17.86■□□□□ 0.45
VPS28-209ENST00000528142 LYZL6O75951 148 aa17.86■□□□□ 0.45
VPS28-209ENST00000528142 COX5AP20674 150 aa17.86■□□□□ 0.45
VPS28-209ENST00000528142 RAD52P43351 418 aa17.86■□□□□ 0.45
VPS28-209ENST00000528142 ATP1B3P54709 279 aa17.86■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms