RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 ETV1P50549 477 aa8.53□□□□□ -1.04
VPS28-204ENST00000526054 CCR9P51686 369 aa8.53□□□□□ -1.04
VPS28-204ENST00000526054 PRDX4Q13162 271 aa8.53□□□□□ -1.04
VPS28-204ENST00000526054 ALKBH1Q13686 389 aaKnown RBP8.53□□□□□ -1.04
VPS28-204ENST00000526054 ODF4Q2M2E3 257 aa8.53□□□□□ -1.04
VPS28-204ENST00000526054 KCTD21Q4G0X4 260 aa8.53□□□□□ -1.04
VPS28-204ENST00000526054 TMEM244Q5VVB8 128 aa8.53□□□□□ -1.04
VPS28-204ENST00000526054 PEG10Q86TG7 708 aaKnown RBP8.53□□□□□ -1.04
VPS28-204ENST00000526054 ZDHHC23Q8IYP9 409 aa8.53□□□□□ -1.04
VPS28-204ENST00000526054 PRSS35Q8N3Z0 413 aa8.53□□□□□ -1.04
VPS28-204ENST00000526054 PLPP7Q8NBV4 271 aa8.53□□□□□ -1.04
VPS28-204ENST00000526054 OR4M2Q8NGB6 313 aa8.53□□□□□ -1.04
VPS28-204ENST00000526054 OR52N1Q8NH53 320 aa8.53□□□□□ -1.04
VPS28-204ENST00000526054 PIGCQ92535 297 aa8.53□□□□□ -1.04
VPS28-204ENST00000526054 CCL17Q92583 94 aa8.53□□□□□ -1.04
VPS28-204ENST00000526054 RAB1CQ92928 201 aa8.53□□□□□ -1.04
VPS28-204ENST00000526054 DVL3Q92997 716 aaPredicted RBP8.53□□□□□ -1.04
VPS28-204ENST00000526054 MYDGFQ969H8 173 aa8.53□□□□□ -1.04
VPS28-204ENST00000526054 ERGIC1Q969X5 290 aa8.53□□□□□ -1.04
VPS28-204ENST00000526054 HIST1H2AAQ96QV6 131 aa8.53□□□□□ -1.04
VPS28-204ENST00000526054 MICU1Q9BPX6 476 aa8.53□□□□□ -1.04
VPS28-204ENST00000526054 RTL8AQ9BWD3 113 aa8.53□□□□□ -1.04
VPS28-204ENST00000526054 ISG20L2Q9H9L3 353 aaKnown RBP8.53□□□□□ -1.04
VPS28-204ENST00000526054 TMEM106BQ9NUM4 274 aa8.53□□□□□ -1.04
VPS28-204ENST00000526054 PCDHB10Q9UN67 800 aa8.53□□□□□ -1.04
VPS28-204ENST00000526054 PPP1R3CQ9UQK1 317 aa8.53□□□□□ -1.04
VPS28-204ENST00000526054 PIGLQ9Y2B2 252 aa8.53□□□□□ -1.04
VPS28-204ENST00000526054 RHBDD3Q9Y3P4 386 aa8.53□□□□□ -1.04
VPS28-204ENST00000526054 PCDHGB5Q9Y5G0 923 aa8.53□□□□□ -1.04
VPS28-204ENST00000526054 A0A1B0GTI1 187 aa8.52□□□□□ -1.05
VPS28-204ENST00000526054 ZNF850A8MQ14 1090 aa8.52□□□□□ -1.05
VPS28-204ENST00000526054 TRIM77I1YAP6 450 aa8.52□□□□□ -1.05
VPS28-204ENST00000526054 CDK1P06493 297 aa8.52□□□□□ -1.05
VPS28-204ENST00000526054 IRF2P14316 349 aa8.52□□□□□ -1.05
VPS28-204ENST00000526054 FAHP16930 419 aa8.52□□□□□ -1.05
VPS28-204ENST00000526054 GATA4P43694 442 aa8.52□□□□□ -1.05
VPS28-204ENST00000526054 TGM4P49221 684 aa8.52□□□□□ -1.05
VPS28-204ENST00000526054 HILS1P60008 231 aa8.52□□□□□ -1.05
VPS28-204ENST00000526054 MAB21L1Q13394 359 aa8.52□□□□□ -1.05
VPS28-204ENST00000526054 SPRNQ5BIV9 151 aa8.52□□□□□ -1.05
VPS28-204ENST00000526054 OR2G6Q5TZ20 316 aa8.52□□□□□ -1.05
VPS28-204ENST00000526054 Q6ZSR3 168 aa8.52□□□□□ -1.05
VPS28-204ENST00000526054 MOGAT3Q86VF5 341 aa8.52□□□□□ -1.05
VPS28-204ENST00000526054 C1orf87Q8N0U7 546 aa8.52□□□□□ -1.05
VPS28-204ENST00000526054 ZNF676Q8N7Q3 588 aa8.52□□□□□ -1.05
VPS28-204ENST00000526054 OR11L1Q8NGX0 322 aa8.52□□□□□ -1.05
VPS28-204ENST00000526054 OR14K1Q8NGZ2 314 aa8.52□□□□□ -1.05
VPS28-204ENST00000526054 JMJD8Q96S16 334 aa8.52□□□□□ -1.05
VPS28-204ENST00000526054 COMMD4Q9H0A8 199 aa8.52□□□□□ -1.05
VPS28-204ENST00000526054 ZNF696Q9H7X3 374 aa8.52□□□□□ -1.05
VPS28-204ENST00000526054 FN3KRPQ9HA64 309 aa8.52□□□□□ -1.05
VPS28-204ENST00000526054 GCM1Q9NP62 436 aa8.52□□□□□ -1.05
VPS28-204ENST00000526054 TRIM36Q9NQ86 728 aa8.52□□□□□ -1.05
VPS28-204ENST00000526054 FKBP14Q9NWM8 211 aa8.52□□□□□ -1.05
VPS28-204ENST00000526054 FRRS1LQ9P0K9 344 aa8.52□□□□□ -1.05
VPS28-204ENST00000526054 ERGIC3Q9Y282 383 aa8.52□□□□□ -1.05
VPS28-204ENST00000526054 WIPI2Q9Y4P8 454 aa8.52□□□□□ -1.05
VPS28-204ENST00000526054 CACNG2Q9Y698 323 aa8.52□□□□□ -1.05
VPS28-204ENST00000526054 V9GYS6 101 aa8.52□□□□□ -1.05
VPS28-204ENST00000526054 TRBV2A0A0J9YWF9 115 aa8.51□□□□□ -1.05
VPS28-204ENST00000526054 IGHV3-64DA0A0J9YX35 117 aa8.51□□□□□ -1.05
VPS28-204ENST00000526054 A6NLC8 198 aa8.51□□□□□ -1.05
VPS28-204ENST00000526054 TMEM210A6NLX4 147 aa8.51□□□□□ -1.05
VPS28-204ENST00000526054 TMEM212A6NML5 194 aa8.51□□□□□ -1.05
VPS28-204ENST00000526054 OR4C45A6NMZ5 311 aa8.51□□□□□ -1.05
VPS28-204ENST00000526054 PTGES3LE9PB15 166 aa8.51□□□□□ -1.05
VPS28-204ENST00000526054 PLPP2O43688 288 aa8.51□□□□□ -1.05
VPS28-204ENST00000526054 GATBO75879 557 aaKnown RBP8.51□□□□□ -1.05
VPS28-204ENST00000526054 PTBP3O95758 552 aaKnown RBP8.51□□□□□ -1.05
VPS28-204ENST00000526054 IGHV2-5P01817 119 aa8.51□□□□□ -1.05
VPS28-204ENST00000526054 ISG15P05161 165 aa8.51□□□□□ -1.05
VPS28-204ENST00000526054 C21orf33P30042 268 aaPredicted RBP8.51□□□□□ -1.05
VPS28-204ENST00000526054 TAS2R43P59537 309 aa8.51□□□□□ -1.05
VPS28-204ENST00000526054 NANOS3P60323 173 aaKnown RBP8.51□□□□□ -1.05
VPS28-204ENST00000526054 GABARAPL2P60520 117 aa8.51□□□□□ -1.05
VPS28-204ENST00000526054 CDK5R1Q15078 307 aa8.51□□□□□ -1.05
VPS28-204ENST00000526054 ZNF181Q2M3W8 571 aa8.51□□□□□ -1.05
VPS28-204ENST00000526054 CCDC58Q4VC31 144 aa8.51□□□□□ -1.05
VPS28-204ENST00000526054 CLVS2Q5SYC1 327 aa8.51□□□□□ -1.05
VPS28-204ENST00000526054 DCAF12L2Q5VW00 463 aa8.51□□□□□ -1.05
VPS28-204ENST00000526054 PRAMEF6Q5VXH4 476 aa8.51□□□□□ -1.05
VPS28-204ENST00000526054 PLCXD3Q63HM9 321 aa8.51□□□□□ -1.05
VPS28-204ENST00000526054 RPL22L1Q6P5R6 122 aaKnown RBP8.51□□□□□ -1.05
VPS28-204ENST00000526054 C1orf229Q6ZS94 237 aaPredicted RBP8.51□□□□□ -1.05
VPS28-204ENST00000526054 KCTD8Q6ZWB6 473 aa8.51□□□□□ -1.05
VPS28-204ENST00000526054 USP43Q70EL4 1123 aa8.51□□□□□ -1.05
VPS28-204ENST00000526054 KRT74Q7RTS7 529 aa8.51□□□□□ -1.05
VPS28-204ENST00000526054 C1QL2Q7Z5L3 287 aa8.51□□□□□ -1.05
VPS28-204ENST00000526054 C3orf56Q8N813 242 aa8.51□□□□□ -1.05
VPS28-204ENST00000526054 OR5AK2Q8NH90 309 aa8.51□□□□□ -1.05
VPS28-204ENST00000526054 ZNF420Q8TAQ5 688 aaPredicted RBP8.51□□□□□ -1.05
VPS28-204ENST00000526054 Q8TCH9 128 aa8.51□□□□□ -1.05
VPS28-204ENST00000526054 FAM216AQ8WUB2 273 aa8.51□□□□□ -1.05
VPS28-204ENST00000526054 GCDHQ92947 438 aaPredicted RBP8.51□□□□□ -1.05
VPS28-204ENST00000526054 RNF166Q96A37 237 aaPredicted RBP8.51□□□□□ -1.05
VPS28-204ENST00000526054 C10orf35Q96D05 121 aa8.51□□□□□ -1.05
VPS28-204ENST00000526054 ITPKCQ96DU7 683 aa8.51□□□□□ -1.05
VPS28-204ENST00000526054 TECTBQ96PL2 329 aa8.51□□□□□ -1.05
VPS28-204ENST00000526054 GAL3ST1Q99999 423 aa8.51□□□□□ -1.05
VPS28-204ENST00000526054 SUCNR1Q9BXA5 334 aa8.51□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms