RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 P2RY2P41231 377 aa4.53□□□□□ -1.68
NUP54-215ENST00000514313 CXCL12P48061 93 aa4.53□□□□□ -1.68
NUP54-215ENST00000514313 Q6ZSR6 202 aa4.53□□□□□ -1.68
NUP54-215ENST00000514313 ZNF695Q8IW36 515 aa4.53□□□□□ -1.68
NUP54-215ENST00000514313 SYCE1Q8N0S2 351 aa4.53□□□□□ -1.68
NUP54-215ENST00000514313 ZCCHC24Q8N2G6 241 aaKnown RBP4.53□□□□□ -1.68
NUP54-215ENST00000514313 OTUD6BQ8N6M0 293 aa4.53□□□□□ -1.68
NUP54-215ENST00000514313 TTLQ8NG68 377 aa4.53□□□□□ -1.68
NUP54-215ENST00000514313 ZBED3Q96IU2 234 aaPredicted RBP4.53□□□□□ -1.68
NUP54-215ENST00000514313 ATP6V1G3Q96LB4 118 aa4.53□□□□□ -1.68
NUP54-215ENST00000514313 LINC00167Q96N53 147 aa4.53□□□□□ -1.68
NUP54-215ENST00000514313 SDHCQ99643 169 aaPredicted RBP4.53□□□□□ -1.68
NUP54-215ENST00000514313 COA1Q9GZY4 146 aa4.53□□□□□ -1.68
NUP54-215ENST00000514313 CHMP5Q9NZZ3 219 aa4.53□□□□□ -1.68
NUP54-215ENST00000514313 RAB23Q9ULC3 237 aa4.53□□□□□ -1.68
NUP54-215ENST00000514313 ACOT9Q9Y305 439 aa4.53□□□□□ -1.68
NUP54-215ENST00000514313 TRAV8-6A0A0B4J262 113 aa4.52□□□□□ -1.69
NUP54-215ENST00000514313 CCL15-CCL14A0A0B4J2E2 113 aa4.52□□□□□ -1.69
NUP54-215ENST00000514313 GOLGA8QA0A0J9YX86 632 aa4.52□□□□□ -1.69
NUP54-215ENST00000514313 ZNF593O00488 134 aaPredicted RBP4.52□□□□□ -1.69
NUP54-215ENST00000514313 IGLV2-8P01709 118 aa4.52□□□□□ -1.69
NUP54-215ENST00000514313 C1GALT1C1LP0DN25 315 aa4.52□□□□□ -1.69
NUP54-215ENST00000514313 RANBP1P43487 201 aa4.52□□□□□ -1.69
NUP54-215ENST00000514313 CD151P48509 253 aa4.52□□□□□ -1.69
NUP54-215ENST00000514313 KCNJ3P48549 501 aa4.52□□□□□ -1.69
NUP54-215ENST00000514313 XRCC4Q13426 336 aa4.52□□□□□ -1.69
NUP54-215ENST00000514313 CCL15Q16663 113 aa4.52□□□□□ -1.69
NUP54-215ENST00000514313 SLC25A35Q3KQZ1 300 aa4.52□□□□□ -1.69
NUP54-215ENST00000514313 ZFP1Q6P2D0 407 aa4.52□□□□□ -1.69
NUP54-215ENST00000514313 ATPAF2Q8N5M1 289 aa4.52□□□□□ -1.69
NUP54-215ENST00000514313 OR1L1Q8NH94 360 aa4.52□□□□□ -1.69
NUP54-215ENST00000514313 LINC01560Q8TB33 94 aa4.52□□□□□ -1.69
NUP54-215ENST00000514313 S100PBPQ96BU1 408 aa4.52□□□□□ -1.69
NUP54-215ENST00000514313 COPS4Q9BT78 406 aa4.52□□□□□ -1.69
NUP54-215ENST00000514313 NUDT9Q9BW91 350 aa4.52□□□□□ -1.69
NUP54-215ENST00000514313 NECAP2Q9NVZ3 263 aa4.52□□□□□ -1.69
NUP54-215ENST00000514313 TFR2Q9UP52 801 aa4.52□□□□□ -1.69
NUP54-215ENST00000514313 FARSAQ9Y285 508 aaKnown RBP4.52□□□□□ -1.69
NUP54-215ENST00000514313 AP3M1Q9Y2T2 418 aa4.52□□□□□ -1.69
NUP54-215ENST00000514313 LRRC42Q9Y546 428 aa4.52□□□□□ -1.69
NUP54-215ENST00000514313 CCNKO75909 580 aa4.51□□□□□ -1.69
NUP54-215ENST00000514313 CST4P01036 141 aa4.51□□□□□ -1.69
NUP54-215ENST00000514313 RPN2P04844 631 aa4.51□□□□□ -1.69
NUP54-215ENST00000514313 CISD3P0C7P0 127 aa4.51□□□□□ -1.69
NUP54-215ENST00000514313 HSPD1P10809 573 aaKnown RBP4.51□□□□□ -1.69
NUP54-215ENST00000514313 DNASE1L1P49184 302 aa4.51□□□□□ -1.69
NUP54-215ENST00000514313 RGS19P49795 217 aa4.51□□□□□ -1.69
NUP54-215ENST00000514313 IL5RAQ01344 420 aa4.51□□□□□ -1.69
NUP54-215ENST00000514313 DMTNQ08495 405 aa4.51□□□□□ -1.69
NUP54-215ENST00000514313 STX3Q13277 289 aa4.51□□□□□ -1.69
NUP54-215ENST00000514313 MFSD14CQ5VZR4 134 aa4.51□□□□□ -1.69
NUP54-215ENST00000514313 NT5CQ8TCD5 201 aa4.51□□□□□ -1.69
NUP54-215ENST00000514313 L3HYPDHQ96EM0 354 aa4.51□□□□□ -1.69
NUP54-215ENST00000514313 ZNF75AQ96N20 296 aa4.51□□□□□ -1.69
NUP54-215ENST00000514313 ALS2CR12Q96Q35 445 aa4.51□□□□□ -1.69
NUP54-215ENST00000514313 CIB1Q99828 191 aa4.51□□□□□ -1.69
NUP54-215ENST00000514313 PDCD1LG2Q9BQ51 273 aa4.51□□□□□ -1.69
NUP54-215ENST00000514313 PLEKHA1Q9HB21 404 aa4.51□□□□□ -1.69
NUP54-215ENST00000514313 ACOT13Q9NPJ3 140 aa4.51□□□□□ -1.69
NUP54-215ENST00000514313 RHBDL2Q9NX52 303 aa4.51□□□□□ -1.69
NUP54-215ENST00000514313 MRM2Q9UI43 246 aaKnown RBP4.51□□□□□ -1.69
NUP54-215ENST00000514313 ORC6Q9Y5N6 252 aa4.51□□□□□ -1.69
NUP54-215ENST00000514313 C2orf16Q68DN1 1984 aa4.51□□□□□ -1.69
NUP54-215ENST00000514313 NUP214P35658 2090 aaPredicted RBP4.5□□□□□ -1.69
NUP54-215ENST00000514313 IGHV6-1A0A0B4J1U7 121 aa4.5□□□□□ -1.69
NUP54-215ENST00000514313 CCDC22O60826 627 aa4.5□□□□□ -1.69
NUP54-215ENST00000514313 IGKV1D-16P01601 117 aa4.5□□□□□ -1.69
NUP54-215ENST00000514313 HLA-DQB1P01920 261 aa4.5□□□□□ -1.69
NUP54-215ENST00000514313 LINC00869P0C866 280 aa4.5□□□□□ -1.69
NUP54-215ENST00000514313 PRLHRP49683 370 aa4.5□□□□□ -1.69
NUP54-215ENST00000514313 OR12D2P58182 307 aa4.5□□□□□ -1.69
NUP54-215ENST00000514313 EBI3Q14213 229 aa4.5□□□□□ -1.69
NUP54-215ENST00000514313 CDNFQ49AH0 187 aa4.5□□□□□ -1.69
NUP54-215ENST00000514313 LINC00483Q53H64 154 aa4.5□□□□□ -1.69
NUP54-215ENST00000514313 TEX30Q5JUR7 227 aa4.5□□□□□ -1.69
NUP54-215ENST00000514313 GUSBP11Q6P575 273 aa4.5□□□□□ -1.69
NUP54-215ENST00000514313 FAM19A1Q7Z5A9 133 aa4.5□□□□□ -1.69
NUP54-215ENST00000514313 UBALD2Q8IYN6 164 aa4.5□□□□□ -1.69
NUP54-215ENST00000514313 CDRT4Q8N9R6 151 aa4.5□□□□□ -1.69
NUP54-215ENST00000514313 DRAXINQ8NBI3 349 aaPredicted RBP4.5□□□□□ -1.69
NUP54-215ENST00000514313 DOK4Q8TEW6 326 aa4.5□□□□□ -1.69
NUP54-215ENST00000514313 PLEKHF2Q9H8W4 249 aa4.5□□□□□ -1.69
NUP54-215ENST00000514313 SLC7A11Q9UPY5 501 aa4.5□□□□□ -1.69
NUP54-215ENST00000514313 DOCK8Q8NF50 2099 aa4.49□□□□□ -1.69
NUP54-215ENST00000514313 SLC5A10A0PJK1 596 aa4.49□□□□□ -1.69
NUP54-215ENST00000514313 CCNE2O96020 404 aa4.49□□□□□ -1.69
NUP54-215ENST00000514313 MRPL3P09001 348 aaKnown RBP4.49□□□□□ -1.69
NUP54-215ENST00000514313 PSMB5P28074 263 aa4.49□□□□□ -1.69
NUP54-215ENST00000514313 IL12BP29460 328 aa4.49□□□□□ -1.69
NUP54-215ENST00000514313 PFN3P60673 137 aa4.49□□□□□ -1.69
NUP54-215ENST00000514313 UBE2KP61086 200 aa4.49□□□□□ -1.69
NUP54-215ENST00000514313 GUSBP1Q15486 140 aa4.49□□□□□ -1.69
NUP54-215ENST00000514313 TTC32Q5I0X7 151 aa4.49□□□□□ -1.69
NUP54-215ENST00000514313 HHATQ5VTY9 493 aa4.49□□□□□ -1.69
NUP54-215ENST00000514313 RESP18Q5W5W9 173 aa4.49□□□□□ -1.69
NUP54-215ENST00000514313 LRRC8AQ8IWT6 810 aa4.49□□□□□ -1.69
NUP54-215ENST00000514313 OR2L8Q8NGY9 312 aa4.49□□□□□ -1.69
NUP54-215ENST00000514313 TMEM239Q8WW34 195 aa4.49□□□□□ -1.69
NUP54-215ENST00000514313 FRZBQ92765 325 aa4.49□□□□□ -1.69
NUP54-215ENST00000514313 CCDC124Q96CT7 223 aaKnown RBP4.49□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms